Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS04420

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS04415 and DDA3937_RS04420 are separated by 226 nucleotidesDDA3937_RS04420 and DDA3937_RS04425 are separated by 83 nucleotides DDA3937_RS04415: DDA3937_RS04415 - cytosine permease, at 974,417 to 975,712 _RS04415 DDA3937_RS04420: DDA3937_RS04420 - Dyp-type peroxidase, at 975,939 to 976,838 _RS04420 DDA3937_RS04425: DDA3937_RS04425 - cysteine synthase CysM, at 976,922 to 977,803 _RS04425 Position (kb) 975 976 977Strain fitness (log2 ratio) -3 -2 -1 0 1at 974.953 kb on + strand, within DDA3937_RS04415at 974.953 kb on + strand, within DDA3937_RS04415at 974.953 kb on + strand, within DDA3937_RS04415at 974.953 kb on + strand, within DDA3937_RS04415at 974.953 kb on + strand, within DDA3937_RS04415at 974.982 kb on + strand, within DDA3937_RS04415at 974.983 kb on - strand, within DDA3937_RS04415at 974.995 kb on + strand, within DDA3937_RS04415at 974.996 kb on - strand, within DDA3937_RS04415at 975.037 kb on + strand, within DDA3937_RS04415at 975.038 kb on - strand, within DDA3937_RS04415at 975.111 kb on + strand, within DDA3937_RS04415at 975.111 kb on + strand, within DDA3937_RS04415at 975.111 kb on + strand, within DDA3937_RS04415at 975.111 kb on + strand, within DDA3937_RS04415at 975.111 kb on + strand, within DDA3937_RS04415at 975.112 kb on - strand, within DDA3937_RS04415at 975.112 kb on - strand, within DDA3937_RS04415at 975.112 kb on - strand, within DDA3937_RS04415at 975.275 kb on + strand, within DDA3937_RS04415at 975.313 kb on + strand, within DDA3937_RS04415at 975.313 kb on + strand, within DDA3937_RS04415at 975.313 kb on + strand, within DDA3937_RS04415at 975.313 kb on + strand, within DDA3937_RS04415at 975.314 kb on - strand, within DDA3937_RS04415at 975.335 kb on + strand, within DDA3937_RS04415at 975.335 kb on + strand, within DDA3937_RS04415at 975.336 kb on - strand, within DDA3937_RS04415at 975.336 kb on - strand, within DDA3937_RS04415at 975.470 kb on + strand, within DDA3937_RS04415at 975.470 kb on + strand, within DDA3937_RS04415at 975.470 kb on + strand, within DDA3937_RS04415at 975.471 kb on - strand, within DDA3937_RS04415at 975.473 kb on + strand, within DDA3937_RS04415at 975.473 kb on + strand, within DDA3937_RS04415at 975.473 kb on + strand, within DDA3937_RS04415at 975.473 kb on + strand, within DDA3937_RS04415at 975.473 kb on + strand, within DDA3937_RS04415at 975.473 kb on + strand, within DDA3937_RS04415at 975.473 kb on + strand, within DDA3937_RS04415at 975.473 kb on + strand, within DDA3937_RS04415at 975.474 kb on - strand, within DDA3937_RS04415at 975.474 kb on - strand, within DDA3937_RS04415at 975.474 kb on - strand, within DDA3937_RS04415at 975.474 kb on - strand, within DDA3937_RS04415at 975.474 kb on - strand, within DDA3937_RS04415at 975.474 kb on - strand, within DDA3937_RS04415at 975.474 kb on - strand, within DDA3937_RS04415at 975.475 kb on + strand, within DDA3937_RS04415at 975.475 kb on + strand, within DDA3937_RS04415at 975.475 kb on + strand, within DDA3937_RS04415at 975.475 kb on + strand, within DDA3937_RS04415at 975.476 kb on - strand, within DDA3937_RS04415at 975.476 kb on - strand, within DDA3937_RS04415at 975.476 kb on - strand, within DDA3937_RS04415at 975.476 kb on - strand, within DDA3937_RS04415at 975.659 kb on + strandat 975.711 kb on - strandat 975.854 kb on - strandat 975.859 kb on + strandat 975.860 kb on - strandat 975.860 kb on - strandat 975.861 kb on + strandat 975.861 kb on + strandat 975.861 kb on + strandat 975.861 kb on + strandat 975.861 kb on + strandat 975.861 kb on + strandat 975.861 kb on + strandat 975.861 kb on + strandat 975.861 kb on + strandat 975.861 kb on + strandat 975.862 kb on - strandat 975.862 kb on - strandat 975.862 kb on - strandat 975.862 kb on - strandat 975.862 kb on - strandat 975.862 kb on - strandat 975.862 kb on - strandat 975.862 kb on - strandat 975.875 kb on + strandat 975.875 kb on + strandat 975.876 kb on - strandat 975.921 kb on - strandat 975.959 kb on + strandat 976.001 kb on + strandat 976.002 kb on - strandat 976.002 kb on - strandat 976.006 kb on + strandat 976.007 kb on - strandat 976.040 kb on + strand, within DDA3937_RS04420at 976.040 kb on + strand, within DDA3937_RS04420at 976.040 kb on + strand, within DDA3937_RS04420at 976.040 kb on + strand, within DDA3937_RS04420at 976.040 kb on + strand, within DDA3937_RS04420at 976.041 kb on - strand, within DDA3937_RS04420at 976.041 kb on - strand, within DDA3937_RS04420at 976.446 kb on + strand, within DDA3937_RS04420at 976.446 kb on + strand, within DDA3937_RS04420at 976.446 kb on + strand, within DDA3937_RS04420at 976.446 kb on + strand, within DDA3937_RS04420at 976.446 kb on + strand, within DDA3937_RS04420at 976.446 kb on + strand, within DDA3937_RS04420at 976.446 kb on + strand, within DDA3937_RS04420at 976.678 kb on - strand, within DDA3937_RS04420at 976.690 kb on - strand, within DDA3937_RS04420at 976.690 kb on - strand, within DDA3937_RS04420at 976.705 kb on - strand, within DDA3937_RS04420at 976.763 kb on + strandat 976.764 kb on - strandat 976.797 kb on + strandat 976.797 kb on + strandat 976.797 kb on + strandat 976.798 kb on - strandat 976.825 kb on + strandat 976.825 kb on + strandat 976.826 kb on - strandat 976.826 kb on - strandat 976.834 kb on + strandat 976.856 kb on - strandat 976.938 kb on + strandat 976.952 kb on - strandat 976.968 kb on + strandat 976.969 kb on - strandat 977.096 kb on - strand, within DDA3937_RS04425at 977.268 kb on - strand, within DDA3937_RS04425at 977.503 kb on + strand, within DDA3937_RS04425at 977.503 kb on + strand, within DDA3937_RS04425at 977.567 kb on + strand, within DDA3937_RS04425at 977.567 kb on + strand, within DDA3937_RS04425at 977.567 kb on + strand, within DDA3937_RS04425at 977.567 kb on + strand, within DDA3937_RS04425at 977.567 kb on + strand, within DDA3937_RS04425at 977.567 kb on + strand, within DDA3937_RS04425at 977.567 kb on + strand, within DDA3937_RS04425at 977.567 kb on + strand, within DDA3937_RS04425at 977.568 kb on - strand, within DDA3937_RS04425at 977.568 kb on - strand, within DDA3937_RS04425at 977.568 kb on - strand, within DDA3937_RS04425at 977.568 kb on - strand, within DDA3937_RS04425at 977.568 kb on - strand, within DDA3937_RS04425at 977.568 kb on - strand, within DDA3937_RS04425at 977.569 kb on + strand, within DDA3937_RS04425at 977.569 kb on + strand, within DDA3937_RS04425at 977.569 kb on + strand, within DDA3937_RS04425at 977.570 kb on - strand, within DDA3937_RS04425at 977.570 kb on - strand, within DDA3937_RS04425at 977.570 kb on - strand, within DDA3937_RS04425at 977.608 kb on + strand, within DDA3937_RS04425at 977.608 kb on + strand, within DDA3937_RS04425at 977.608 kb on + strand, within DDA3937_RS04425at 977.608 kb on + strand, within DDA3937_RS04425at 977.608 kb on + strand, within DDA3937_RS04425at 977.614 kb on + strand, within DDA3937_RS04425at 977.614 kb on + strand, within DDA3937_RS04425at 977.615 kb on - strand, within DDA3937_RS04425at 977.615 kb on - strand, within DDA3937_RS04425at 977.777 kb on + strandat 977.777 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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974,953 + DDA3937_RS04415 0.41 -0.1
974,953 + DDA3937_RS04415 0.41 +0.1
974,953 + DDA3937_RS04415 0.41 -0.3
974,953 + DDA3937_RS04415 0.41 +0.3
974,953 + DDA3937_RS04415 0.41 -0.9
974,982 + DDA3937_RS04415 0.44 +1.1
974,983 - DDA3937_RS04415 0.44 -2.3
974,995 + DDA3937_RS04415 0.45 -1.5
974,996 - DDA3937_RS04415 0.45 +0.1
975,037 + DDA3937_RS04415 0.48 +0.2
975,038 - DDA3937_RS04415 0.48 -0.3
975,111 + DDA3937_RS04415 0.54 +0.4
975,111 + DDA3937_RS04415 0.54 -0.6
975,111 + DDA3937_RS04415 0.54 -0.1
975,111 + DDA3937_RS04415 0.54 +1.3
975,111 + DDA3937_RS04415 0.54 +0.4
975,112 - DDA3937_RS04415 0.54 +0.2
975,112 - DDA3937_RS04415 0.54 -0.3
975,112 - DDA3937_RS04415 0.54 -0.7
975,275 + DDA3937_RS04415 0.66 -0.9
975,313 + DDA3937_RS04415 0.69 -0.5
975,313 + DDA3937_RS04415 0.69 -0.1
975,313 + DDA3937_RS04415 0.69 -1.9
975,313 + DDA3937_RS04415 0.69 +0.1
975,314 - DDA3937_RS04415 0.69 +0.1
975,335 + DDA3937_RS04415 0.71 +0.1
975,335 + DDA3937_RS04415 0.71 +0.6
975,336 - DDA3937_RS04415 0.71 +0.7
975,336 - DDA3937_RS04415 0.71 -0.3
975,470 + DDA3937_RS04415 0.81 -0.0
975,470 + DDA3937_RS04415 0.81 -0.4
975,470 + DDA3937_RS04415 0.81 +1.3
975,471 - DDA3937_RS04415 0.81 +0.1
975,473 + DDA3937_RS04415 0.81 -0.1
975,473 + DDA3937_RS04415 0.81 +0.3
975,473 + DDA3937_RS04415 0.81 +0.4
975,473 + DDA3937_RS04415 0.81 -1.2
975,473 + DDA3937_RS04415 0.81 +0.4
975,473 + DDA3937_RS04415 0.81 -0.3
975,473 + DDA3937_RS04415 0.81 -0.8
975,473 + DDA3937_RS04415 0.81 -0.6
975,474 - DDA3937_RS04415 0.82 +1.4
975,474 - DDA3937_RS04415 0.82 +0.5
975,474 - DDA3937_RS04415 0.82 +0.1
975,474 - DDA3937_RS04415 0.82 -0.3
975,474 - DDA3937_RS04415 0.82 -0.4
975,474 - DDA3937_RS04415 0.82 -1.8
975,474 - DDA3937_RS04415 0.82 -0.8
975,475 + DDA3937_RS04415 0.82 +1.1
975,475 + DDA3937_RS04415 0.82 -0.6
975,475 + DDA3937_RS04415 0.82 -0.5
975,475 + DDA3937_RS04415 0.82 -0.1
975,476 - DDA3937_RS04415 0.82 -1.0
975,476 - DDA3937_RS04415 0.82 +0.1
975,476 - DDA3937_RS04415 0.82 -1.3
975,476 - DDA3937_RS04415 0.82 -0.4
975,659 + -0.9
975,711 - +0.3
975,854 - -0.6
975,859 + -0.6
975,860 - -0.4
975,860 - -0.3
975,861 + -2.1
975,861 + -1.3
975,861 + +0.3
975,861 + +0.6
975,861 + -0.9
975,861 + -1.3
975,861 + +0.4
975,861 + -0.6
975,861 + -0.7
975,861 + -0.3
975,862 - -2.7
975,862 - -0.9
975,862 - +0.2
975,862 - -2.3
975,862 - -0.9
975,862 - -2.3
975,862 - -1.9
975,862 - -1.3
975,875 + +0.3
975,875 + -0.8
975,876 - -2.0
975,921 - -1.1
975,959 + -1.5
976,001 + -0.5
976,002 - -0.9
976,002 - -2.1
976,006 + -3.6
976,007 - +0.6
976,040 + DDA3937_RS04420 0.11 -0.9
976,040 + DDA3937_RS04420 0.11 -3.0
976,040 + DDA3937_RS04420 0.11 -2.0
976,040 + DDA3937_RS04420 0.11 -2.5
976,040 + DDA3937_RS04420 0.11 -1.7
976,041 - DDA3937_RS04420 0.11 -1.9
976,041 - DDA3937_RS04420 0.11 -3.1
976,446 + DDA3937_RS04420 0.56 -3.0
976,446 + DDA3937_RS04420 0.56 -1.3
976,446 + DDA3937_RS04420 0.56 -1.3
976,446 + DDA3937_RS04420 0.56 -1.5
976,446 + DDA3937_RS04420 0.56 -2.5
976,446 + DDA3937_RS04420 0.56 -1.3
976,446 + DDA3937_RS04420 0.56 -1.3
976,678 - DDA3937_RS04420 0.82 -0.5
976,690 - DDA3937_RS04420 0.83 -3.3
976,690 - DDA3937_RS04420 0.83 -1.7
976,705 - DDA3937_RS04420 0.85 -0.9
976,763 + -1.8
976,764 - -0.9
976,797 + -2.7
976,797 + -1.7
976,797 + -2.1
976,798 - -0.9
976,825 + -0.7
976,825 + +0.3
976,826 - -1.5
976,826 - -0.7
976,834 + +0.1
976,856 - -0.3
976,938 + -0.3
976,952 - +0.4
976,968 + +0.4
976,969 - +0.1
977,096 - DDA3937_RS04425 0.20 -0.5
977,268 - DDA3937_RS04425 0.39 +0.1
977,503 + DDA3937_RS04425 0.66 +0.5
977,503 + DDA3937_RS04425 0.66 +0.4
977,567 + DDA3937_RS04425 0.73 +0.3
977,567 + DDA3937_RS04425 0.73 -2.1
977,567 + DDA3937_RS04425 0.73 +0.1
977,567 + DDA3937_RS04425 0.73 +0.3
977,567 + DDA3937_RS04425 0.73 -1.5
977,567 + DDA3937_RS04425 0.73 +0.3
977,567 + DDA3937_RS04425 0.73 -0.6
977,567 + DDA3937_RS04425 0.73 +0.1
977,568 - DDA3937_RS04425 0.73 -0.3
977,568 - DDA3937_RS04425 0.73 -2.1
977,568 - DDA3937_RS04425 0.73 +0.3
977,568 - DDA3937_RS04425 0.73 +0.1
977,568 - DDA3937_RS04425 0.73 -0.5
977,568 - DDA3937_RS04425 0.73 -0.3
977,569 + DDA3937_RS04425 0.73 +0.5
977,569 + DDA3937_RS04425 0.73 +0.7
977,569 + DDA3937_RS04425 0.73 -0.4
977,570 - DDA3937_RS04425 0.73 +0.1
977,570 - DDA3937_RS04425 0.73 -0.4
977,570 - DDA3937_RS04425 0.73 +0.9
977,608 + DDA3937_RS04425 0.78 +0.1
977,608 + DDA3937_RS04425 0.78 -0.9
977,608 + DDA3937_RS04425 0.78 +0.5
977,608 + DDA3937_RS04425 0.78 -0.9
977,608 + DDA3937_RS04425 0.78 +1.6
977,614 + DDA3937_RS04425 0.78 +0.6
977,614 + DDA3937_RS04425 0.78 -0.5
977,615 - DDA3937_RS04425 0.79 +0.1
977,615 - DDA3937_RS04425 0.79 +0.1
977,777 + -0.6
977,777 + -0.5

Or see this region's nucleotide sequence