Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS04355 and DDA3937_RS04360 are separated by 504 nucleotides DDA3937_RS04360 and DDA3937_RS04365 overlap by 4 nucleotides
DDA3937_RS04355: DDA3937_RS04355 - NADP-dependent oxaloacetate-decarboxylating malate dehydrogenase, at 956,725 to 959,004
_RS04355
DDA3937_RS04360: DDA3937_RS04360 - YaiI/YqxD family protein, at 959,509 to 959,958
_RS04360
DDA3937_RS04365: DDA3937_RS04365 - oxygen-dependent coproporphyrinogen oxidase, at 959,955 to 960,893
_RS04365
Position (kb) 959
960 Strain fitness (log2 ratio) -2
-1
0
1
2 at 958.519 kb on + strand, within DDA3937_RS04355 at 958.519 kb on + strand, within DDA3937_RS04355 at 958.519 kb on + strand, within DDA3937_RS04355 at 958.520 kb on - strand, within DDA3937_RS04355 at 958.520 kb on - strand, within DDA3937_RS04355 at 958.520 kb on - strand, within DDA3937_RS04355 at 958.520 kb on - strand, within DDA3937_RS04355 at 958.520 kb on - strand, within DDA3937_RS04355 at 958.520 kb on - strand, within DDA3937_RS04355 at 958.520 kb on - strand, within DDA3937_RS04355 at 958.843 kb on + strand at 958.844 kb on - strand at 958.844 kb on - strand at 958.844 kb on - strand at 958.917 kb on - strand at 959.002 kb on + strand at 959.002 kb on + strand at 959.002 kb on + strand at 959.003 kb on - strand at 959.003 kb on - strand at 959.059 kb on - strand at 959.059 kb on - strand at 959.077 kb on - strand at 959.079 kb on - strand at 959.079 kb on - strand at 959.079 kb on - strand at 959.079 kb on - strand at 959.079 kb on - strand at 959.452 kb on + strand at 959.597 kb on - strand, within DDA3937_RS04360 at 959.616 kb on + strand, within DDA3937_RS04360 at 959.616 kb on + strand, within DDA3937_RS04360 at 959.617 kb on - strand, within DDA3937_RS04360 at 959.617 kb on - strand, within DDA3937_RS04360 at 959.655 kb on + strand, within DDA3937_RS04360 at 959.656 kb on - strand, within DDA3937_RS04360 at 959.666 kb on + strand, within DDA3937_RS04360 at 959.788 kb on + strand, within DDA3937_RS04360 at 959.789 kb on - strand, within DDA3937_RS04360 at 959.979 kb on - strand at 960.894 kb on - strand at 960.894 kb on - strand at 960.894 kb on - strand at 960.894 kb on - strand at 960.946 kb on + strand at 960.946 kb on + strand at 960.947 kb on - strand at 960.947 kb on - strand at 960.952 kb on + strand at 960.952 kb on + strand at 960.952 kb on + strand at 960.952 kb on + strand at 960.952 kb on + strand at 960.953 kb on - strand at 960.953 kb on - strand at 960.953 kb on - strand at 960.953 kb on - strand at 960.953 kb on - strand at 960.953 kb on - strand at 960.953 kb on - strand at 960.953 kb on - strand at 960.953 kb on - strand at 960.955 kb on + strand at 960.955 kb on + strand at 960.955 kb on + strand at 960.955 kb on + strand at 960.955 kb on + strand at 960.955 kb on + strand at 960.956 kb on - strand at 960.956 kb on - strand at 960.957 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 958,519 + DDA3937_RS04355 0.79 -0.2 958,519 + DDA3937_RS04355 0.79 +1.1 958,519 + DDA3937_RS04355 0.79 -0.5 958,520 - DDA3937_RS04355 0.79 -0.1 958,520 - DDA3937_RS04355 0.79 +1.8 958,520 - DDA3937_RS04355 0.79 +0.7 958,520 - DDA3937_RS04355 0.79 -0.6 958,520 - DDA3937_RS04355 0.79 -1.8 958,520 - DDA3937_RS04355 0.79 +0.1 958,520 - DDA3937_RS04355 0.79 +1.1 958,843 + +1.1 958,844 - -0.9 958,844 - +0.2 958,844 - +0.1 958,917 - +0.2 959,002 + +0.7 959,002 + +0.1 959,002 + -0.8 959,003 - -0.5 959,003 - -1.3 959,059 - +0.2 959,059 - -1.2 959,077 - -1.1 959,079 - +0.8 959,079 - -0.8 959,079 - +0.9 959,079 - +1.4 959,079 - +0.1 959,452 + +0.1 959,597 - DDA3937_RS04360 0.20 -0.2 959,616 + DDA3937_RS04360 0.24 -1.5 959,616 + DDA3937_RS04360 0.24 -1.4 959,617 - DDA3937_RS04360 0.24 -0.9 959,617 - DDA3937_RS04360 0.24 -1.2 959,655 + DDA3937_RS04360 0.32 +0.5 959,656 - DDA3937_RS04360 0.33 -0.4 959,666 + DDA3937_RS04360 0.35 -1.0 959,788 + DDA3937_RS04360 0.62 +0.3 959,789 - DDA3937_RS04360 0.62 +0.5 959,979 - -0.1 960,894 - +0.8 960,894 - +0.1 960,894 - -2.3 960,894 - -0.1 960,946 + -0.5 960,946 + -0.2 960,947 - +0.3 960,947 - -0.7 960,952 + +0.1 960,952 + -0.7 960,952 + -0.1 960,952 + -0.5 960,952 + -0.7 960,953 - -0.9 960,953 - -0.5 960,953 - -0.1 960,953 - -0.8 960,953 - +0.9 960,953 - -0.9 960,953 - +0.8 960,953 - -1.0 960,953 - -0.3 960,955 + +2.4 960,955 + -1.6 960,955 + -0.3 960,955 + +0.5 960,955 + +0.6 960,955 + -0.4 960,956 - -0.4 960,956 - -1.4 960,957 + +0.1
Or see this region's nucleotide sequence