Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS04350 and DDA3937_RS04355 are separated by 373 nucleotides DDA3937_RS04355 and DDA3937_RS04360 are separated by 504 nucleotides DDA3937_RS04360 and DDA3937_RS04365 overlap by 4 nucleotides
DDA3937_RS04350: DDA3937_RS04350 - transaldolase, at 955,401 to 956,351
_RS04350
DDA3937_RS04355: DDA3937_RS04355 - NADP-dependent oxaloacetate-decarboxylating malate dehydrogenase, at 956,725 to 959,004
_RS04355
DDA3937_RS04360: DDA3937_RS04360 - YaiI/YqxD family protein, at 959,509 to 959,958
_RS04360
DDA3937_RS04365: DDA3937_RS04365 - oxygen-dependent coproporphyrinogen oxidase, at 959,955 to 960,893
_RS04365
Position (kb) 956
957
958
959
960 Strain fitness (log2 ratio) -2
-1
0
1
2 at 955.726 kb on + strand, within DDA3937_RS04350 at 955.727 kb on - strand, within DDA3937_RS04350 at 955.727 kb on - strand, within DDA3937_RS04350 at 955.727 kb on - strand, within DDA3937_RS04350 at 955.727 kb on - strand, within DDA3937_RS04350 at 955.727 kb on - strand, within DDA3937_RS04350 at 955.730 kb on + strand, within DDA3937_RS04350 at 955.798 kb on + strand, within DDA3937_RS04350 at 955.807 kb on + strand, within DDA3937_RS04350 at 955.808 kb on - strand, within DDA3937_RS04350 at 955.808 kb on - strand, within DDA3937_RS04350 at 955.837 kb on + strand, within DDA3937_RS04350 at 955.837 kb on + strand, within DDA3937_RS04350 at 955.983 kb on + strand, within DDA3937_RS04350 at 955.983 kb on + strand, within DDA3937_RS04350 at 955.983 kb on + strand, within DDA3937_RS04350 at 955.983 kb on + strand, within DDA3937_RS04350 at 955.983 kb on + strand, within DDA3937_RS04350 at 955.983 kb on + strand, within DDA3937_RS04350 at 955.984 kb on - strand, within DDA3937_RS04350 at 955.984 kb on - strand, within DDA3937_RS04350 at 956.000 kb on - strand, within DDA3937_RS04350 at 956.000 kb on - strand at 956.000 kb on - strand, within DDA3937_RS04350 at 956.024 kb on + strand at 956.313 kb on + strand at 956.340 kb on + strand at 956.340 kb on + strand at 956.340 kb on + strand at 956.341 kb on - strand at 956.341 kb on - strand at 956.341 kb on - strand at 956.436 kb on + strand at 956.462 kb on + strand at 956.473 kb on - strand at 956.478 kb on + strand at 956.479 kb on - strand at 956.479 kb on - strand at 956.539 kb on + strand at 956.539 kb on + strand at 956.540 kb on - strand at 956.572 kb on + strand at 956.597 kb on + strand at 956.598 kb on - strand at 956.605 kb on + strand at 956.605 kb on + strand at 956.605 kb on + strand at 956.606 kb on - strand at 956.606 kb on - strand at 956.606 kb on - strand at 956.606 kb on - strand at 956.606 kb on - strand at 956.606 kb on - strand at 956.607 kb on + strand at 956.607 kb on + strand at 956.607 kb on + strand at 956.607 kb on + strand at 956.607 kb on + strand at 956.607 kb on + strand at 956.608 kb on - strand at 956.608 kb on - strand at 956.608 kb on - strand at 956.608 kb on - strand at 956.610 kb on + strand at 956.610 kb on + strand at 956.611 kb on - strand at 956.618 kb on - strand at 956.637 kb on - strand at 956.637 kb on - strand at 956.670 kb on + strand at 956.716 kb on + strand at 956.716 kb on + strand at 956.717 kb on - strand at 956.717 kb on - strand at 956.717 kb on - strand at 956.719 kb on + strand at 956.719 kb on + strand at 956.720 kb on - strand at 956.724 kb on + strand at 956.724 kb on + strand at 956.724 kb on + strand at 956.724 kb on + strand at 956.725 kb on - strand at 956.725 kb on - strand at 956.725 kb on - strand at 956.767 kb on + strand at 956.840 kb on - strand at 956.896 kb on + strand at 956.897 kb on - strand at 956.902 kb on + strand at 956.902 kb on + strand at 956.902 kb on + strand at 956.902 kb on + strand at 956.903 kb on - strand at 956.903 kb on - strand at 956.903 kb on - strand at 956.904 kb on + strand at 956.905 kb on - strand at 956.905 kb on - strand at 957.135 kb on + strand, within DDA3937_RS04355 at 957.135 kb on + strand, within DDA3937_RS04355 at 957.135 kb on + strand, within DDA3937_RS04355 at 957.136 kb on - strand, within DDA3937_RS04355 at 957.157 kb on + strand, within DDA3937_RS04355 at 957.157 kb on + strand, within DDA3937_RS04355 at 957.400 kb on + strand, within DDA3937_RS04355 at 957.400 kb on + strand, within DDA3937_RS04355 at 957.400 kb on + strand, within DDA3937_RS04355 at 957.401 kb on - strand, within DDA3937_RS04355 at 957.401 kb on - strand, within DDA3937_RS04355 at 957.401 kb on - strand, within DDA3937_RS04355 at 957.401 kb on - strand, within DDA3937_RS04355 at 957.442 kb on + strand, within DDA3937_RS04355 at 957.442 kb on + strand, within DDA3937_RS04355 at 957.443 kb on - strand, within DDA3937_RS04355 at 957.443 kb on - strand, within DDA3937_RS04355 at 957.443 kb on - strand, within DDA3937_RS04355 at 957.443 kb on - strand, within DDA3937_RS04355 at 957.686 kb on + strand, within DDA3937_RS04355 at 957.686 kb on + strand, within DDA3937_RS04355 at 957.687 kb on - strand, within DDA3937_RS04355 at 957.687 kb on - strand, within DDA3937_RS04355 at 957.687 kb on - strand, within DDA3937_RS04355 at 957.687 kb on - strand, within DDA3937_RS04355 at 957.687 kb on - strand, within DDA3937_RS04355 at 957.857 kb on - strand, within DDA3937_RS04355 at 957.970 kb on + strand, within DDA3937_RS04355 at 957.970 kb on + strand, within DDA3937_RS04355 at 957.970 kb on + strand, within DDA3937_RS04355 at 957.971 kb on - strand, within DDA3937_RS04355 at 957.971 kb on - strand, within DDA3937_RS04355 at 957.999 kb on + strand, within DDA3937_RS04355 at 958.000 kb on - strand, within DDA3937_RS04355 at 958.253 kb on - strand, within DDA3937_RS04355 at 958.264 kb on + strand, within DDA3937_RS04355 at 958.265 kb on - strand, within DDA3937_RS04355 at 958.350 kb on + strand, within DDA3937_RS04355 at 958.398 kb on + strand, within DDA3937_RS04355 at 958.402 kb on + strand, within DDA3937_RS04355 at 958.402 kb on + strand, within DDA3937_RS04355 at 958.402 kb on + strand, within DDA3937_RS04355 at 958.402 kb on + strand, within DDA3937_RS04355 at 958.402 kb on + strand, within DDA3937_RS04355 at 958.403 kb on - strand, within DDA3937_RS04355 at 958.403 kb on - strand, within DDA3937_RS04355 at 958.403 kb on - strand, within DDA3937_RS04355 at 958.403 kb on - strand, within DDA3937_RS04355 at 958.403 kb on - strand, within DDA3937_RS04355 at 958.403 kb on - strand, within DDA3937_RS04355 at 958.519 kb on + strand, within DDA3937_RS04355 at 958.519 kb on + strand, within DDA3937_RS04355 at 958.519 kb on + strand, within DDA3937_RS04355 at 958.520 kb on - strand, within DDA3937_RS04355 at 958.520 kb on - strand, within DDA3937_RS04355 at 958.520 kb on - strand, within DDA3937_RS04355 at 958.520 kb on - strand, within DDA3937_RS04355 at 958.520 kb on - strand, within DDA3937_RS04355 at 958.520 kb on - strand, within DDA3937_RS04355 at 958.520 kb on - strand, within DDA3937_RS04355 at 958.843 kb on + strand at 958.844 kb on - strand at 958.844 kb on - strand at 958.844 kb on - strand at 958.917 kb on - strand at 959.002 kb on + strand at 959.002 kb on + strand at 959.002 kb on + strand at 959.003 kb on - strand at 959.003 kb on - strand at 959.059 kb on - strand at 959.059 kb on - strand at 959.077 kb on - strand at 959.079 kb on - strand at 959.079 kb on - strand at 959.079 kb on - strand at 959.079 kb on - strand at 959.079 kb on - strand at 959.452 kb on + strand at 959.597 kb on - strand, within DDA3937_RS04360 at 959.616 kb on + strand, within DDA3937_RS04360 at 959.616 kb on + strand, within DDA3937_RS04360 at 959.617 kb on - strand, within DDA3937_RS04360 at 959.617 kb on - strand, within DDA3937_RS04360 at 959.655 kb on + strand, within DDA3937_RS04360 at 959.656 kb on - strand, within DDA3937_RS04360 at 959.666 kb on + strand, within DDA3937_RS04360 at 959.788 kb on + strand, within DDA3937_RS04360 at 959.789 kb on - strand, within DDA3937_RS04360 at 959.979 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 955,726 + DDA3937_RS04350 0.34 -1.5 955,727 - DDA3937_RS04350 0.34 -2.1 955,727 - DDA3937_RS04350 0.34 -1.1 955,727 - DDA3937_RS04350 0.34 +0.2 955,727 - DDA3937_RS04350 0.34 -0.3 955,727 - DDA3937_RS04350 0.34 -0.4 955,730 + DDA3937_RS04350 0.35 -0.4 955,798 + DDA3937_RS04350 0.42 -0.2 955,807 + DDA3937_RS04350 0.43 +0.6 955,808 - DDA3937_RS04350 0.43 +0.0 955,808 - DDA3937_RS04350 0.43 +0.5 955,837 + DDA3937_RS04350 0.46 +0.1 955,837 + DDA3937_RS04350 0.46 -0.2 955,983 + DDA3937_RS04350 0.61 -0.8 955,983 + DDA3937_RS04350 0.61 +1.1 955,983 + DDA3937_RS04350 0.61 +2.1 955,983 + DDA3937_RS04350 0.61 +0.5 955,983 + DDA3937_RS04350 0.61 -0.3 955,983 + DDA3937_RS04350 0.61 -0.2 955,984 - DDA3937_RS04350 0.61 +0.5 955,984 - DDA3937_RS04350 0.61 -0.1 956,000 - DDA3937_RS04350 0.63 -0.2 956,000 - -0.5 956,000 - DDA3937_RS04350 0.63 -0.2 956,024 + +1.8 956,313 + +0.1 956,340 + +0.4 956,340 + -0.7 956,340 + -0.5 956,341 - -0.9 956,341 - -0.6 956,341 - -0.6 956,436 + -2.4 956,462 + -0.7 956,473 - +0.5 956,478 + -0.4 956,479 - -0.2 956,479 - -0.3 956,539 + +1.1 956,539 + -0.7 956,540 - -0.3 956,572 + -0.2 956,597 + -0.2 956,598 - +0.7 956,605 + +0.5 956,605 + +0.1 956,605 + -0.5 956,606 - +1.1 956,606 - +0.3 956,606 - -0.1 956,606 - -2.0 956,606 - -0.3 956,606 - -0.5 956,607 + +0.0 956,607 + -0.3 956,607 + -0.9 956,607 + +0.4 956,607 + -0.0 956,607 + +0.1 956,608 - -0.4 956,608 - +0.5 956,608 - -0.2 956,608 - -0.2 956,610 + -0.6 956,610 + +1.2 956,611 - -0.2 956,618 - +0.5 956,637 - -1.4 956,637 - -0.6 956,670 + +0.1 956,716 + +0.2 956,716 + -0.5 956,717 - -0.4 956,717 - +1.1 956,717 - +1.9 956,719 + +0.1 956,719 + -2.7 956,720 - +0.1 956,724 + +0.2 956,724 + -1.1 956,724 + -0.4 956,724 + -1.9 956,725 - +1.1 956,725 - +1.8 956,725 - +0.3 956,767 + +0.6 956,840 - -0.7 956,896 + -1.3 956,897 - +0.6 956,902 + +0.1 956,902 + -0.5 956,902 + -1.1 956,902 + +0.5 956,903 - +0.8 956,903 - +0.3 956,903 - -1.7 956,904 + -0.3 956,905 - +0.6 956,905 - -0.5 957,135 + DDA3937_RS04355 0.18 -0.5 957,135 + DDA3937_RS04355 0.18 +0.1 957,135 + DDA3937_RS04355 0.18 +0.6 957,136 - DDA3937_RS04355 0.18 -0.5 957,157 + DDA3937_RS04355 0.19 +0.1 957,157 + DDA3937_RS04355 0.19 +0.1 957,400 + DDA3937_RS04355 0.30 +0.4 957,400 + DDA3937_RS04355 0.30 +0.9 957,400 + DDA3937_RS04355 0.30 -1.5 957,401 - DDA3937_RS04355 0.30 -1.3 957,401 - DDA3937_RS04355 0.30 +0.9 957,401 - DDA3937_RS04355 0.30 -0.2 957,401 - DDA3937_RS04355 0.30 +0.1 957,442 + DDA3937_RS04355 0.31 +0.8 957,442 + DDA3937_RS04355 0.31 +1.0 957,443 - DDA3937_RS04355 0.31 -1.1 957,443 - DDA3937_RS04355 0.31 +0.5 957,443 - DDA3937_RS04355 0.31 -1.8 957,443 - DDA3937_RS04355 0.31 -0.7 957,686 + DDA3937_RS04355 0.42 -0.1 957,686 + DDA3937_RS04355 0.42 -1.1 957,687 - DDA3937_RS04355 0.42 +1.1 957,687 - DDA3937_RS04355 0.42 +1.0 957,687 - DDA3937_RS04355 0.42 -0.8 957,687 - DDA3937_RS04355 0.42 +0.2 957,687 - DDA3937_RS04355 0.42 +1.1 957,857 - DDA3937_RS04355 0.50 -0.1 957,970 + DDA3937_RS04355 0.55 -1.5 957,970 + DDA3937_RS04355 0.55 -0.2 957,970 + DDA3937_RS04355 0.55 +0.1 957,971 - DDA3937_RS04355 0.55 -0.5 957,971 - DDA3937_RS04355 0.55 +1.0 957,999 + DDA3937_RS04355 0.56 -0.3 958,000 - DDA3937_RS04355 0.56 -0.5 958,253 - DDA3937_RS04355 0.67 -0.4 958,264 + DDA3937_RS04355 0.68 -1.5 958,265 - DDA3937_RS04355 0.68 -0.4 958,350 + DDA3937_RS04355 0.71 +0.7 958,398 + DDA3937_RS04355 0.73 +0.3 958,402 + DDA3937_RS04355 0.74 +0.9 958,402 + DDA3937_RS04355 0.74 +1.5 958,402 + DDA3937_RS04355 0.74 +0.1 958,402 + DDA3937_RS04355 0.74 -0.2 958,402 + DDA3937_RS04355 0.74 +0.0 958,403 - DDA3937_RS04355 0.74 -1.8 958,403 - DDA3937_RS04355 0.74 +0.4 958,403 - DDA3937_RS04355 0.74 +1.0 958,403 - DDA3937_RS04355 0.74 +0.9 958,403 - DDA3937_RS04355 0.74 -0.1 958,403 - DDA3937_RS04355 0.74 +0.1 958,519 + DDA3937_RS04355 0.79 -0.2 958,519 + DDA3937_RS04355 0.79 +1.1 958,519 + DDA3937_RS04355 0.79 -0.5 958,520 - DDA3937_RS04355 0.79 -0.1 958,520 - DDA3937_RS04355 0.79 +1.8 958,520 - DDA3937_RS04355 0.79 +0.7 958,520 - DDA3937_RS04355 0.79 -0.6 958,520 - DDA3937_RS04355 0.79 -1.8 958,520 - DDA3937_RS04355 0.79 +0.1 958,520 - DDA3937_RS04355 0.79 +1.1 958,843 + +1.1 958,844 - -0.9 958,844 - +0.2 958,844 - +0.1 958,917 - +0.2 959,002 + +0.7 959,002 + +0.1 959,002 + -0.8 959,003 - -0.5 959,003 - -1.3 959,059 - +0.2 959,059 - -1.2 959,077 - -1.1 959,079 - +0.8 959,079 - -0.8 959,079 - +0.9 959,079 - +1.4 959,079 - +0.1 959,452 + +0.1 959,597 - DDA3937_RS04360 0.20 -0.2 959,616 + DDA3937_RS04360 0.24 -1.5 959,616 + DDA3937_RS04360 0.24 -1.4 959,617 - DDA3937_RS04360 0.24 -0.9 959,617 - DDA3937_RS04360 0.24 -1.2 959,655 + DDA3937_RS04360 0.32 +0.5 959,656 - DDA3937_RS04360 0.33 -0.4 959,666 + DDA3937_RS04360 0.35 -1.0 959,788 + DDA3937_RS04360 0.62 +0.3 959,789 - DDA3937_RS04360 0.62 +0.5 959,979 - -0.1
Or see this region's nucleotide sequence