Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS04335 and DDA3937_RS04340 are separated by 395 nucleotides DDA3937_RS04340 and DDA3937_RS04345 are separated by 158 nucleotides DDA3937_RS04345 and DDA3937_RS04350 are separated by 80 nucleotides
DDA3937_RS04335: DDA3937_RS04335 - nucleotide exchange factor GrpE, at 952,359 to 952,946
_RS04335
DDA3937_RS04340: DDA3937_RS04340 - Nramp family divalent metal transporter, at 953,342 to 954,577
_RS04340
DDA3937_RS04345: DDA3937_RS04345 - GDP-mannose pyrophosphatase NudK, at 954,736 to 955,320
_RS04345
DDA3937_RS04350: DDA3937_RS04350 - transaldolase, at 955,401 to 956,351
_RS04350
Position (kb) 953
954
955 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 952.945 kb on - strand at 953.038 kb on + strand at 953.038 kb on + strand at 953.039 kb on - strand at 953.050 kb on + strand at 953.051 kb on - strand at 953.051 kb on - strand at 953.051 kb on - strand at 953.051 kb on - strand at 953.100 kb on + strand at 953.101 kb on - strand at 953.101 kb on - strand at 953.104 kb on + strand at 953.104 kb on + strand at 953.105 kb on - strand at 953.138 kb on + strand at 953.138 kb on + strand at 953.142 kb on + strand at 953.143 kb on - strand at 953.179 kb on + strand at 953.179 kb on + strand at 953.180 kb on - strand at 953.180 kb on - strand at 953.194 kb on + strand at 953.194 kb on + strand at 953.195 kb on - strand at 953.195 kb on - strand at 953.195 kb on - strand at 953.195 kb on - strand at 953.198 kb on + strand at 953.198 kb on + strand at 953.198 kb on + strand at 953.198 kb on + strand at 953.198 kb on + strand at 953.199 kb on - strand at 953.201 kb on + strand at 953.202 kb on - strand at 953.202 kb on - strand at 953.236 kb on + strand at 953.236 kb on + strand at 953.236 kb on + strand at 953.237 kb on - strand at 953.237 kb on - strand at 953.237 kb on - strand at 953.237 kb on - strand at 953.242 kb on - strand at 953.309 kb on + strand at 953.312 kb on + strand at 953.312 kb on + strand at 953.321 kb on - strand at 953.326 kb on + strand at 953.327 kb on - strand at 953.327 kb on - strand at 953.327 kb on - strand at 953.327 kb on - strand at 953.327 kb on - strand at 953.327 kb on - strand at 953.327 kb on - strand at 953.327 kb on - strand at 953.335 kb on + strand at 953.341 kb on + strand at 953.341 kb on + strand at 953.341 kb on + strand at 953.342 kb on - strand at 953.358 kb on + strand at 953.359 kb on - strand at 953.377 kb on + strand at 953.377 kb on + strand at 953.377 kb on + strand at 953.377 kb on + strand at 953.435 kb on + strand at 953.436 kb on - strand at 953.438 kb on - strand at 953.544 kb on + strand, within DDA3937_RS04340 at 953.593 kb on + strand, within DDA3937_RS04340 at 953.593 kb on + strand, within DDA3937_RS04340 at 953.594 kb on - strand, within DDA3937_RS04340 at 953.594 kb on - strand, within DDA3937_RS04340 at 953.701 kb on + strand, within DDA3937_RS04340 at 953.706 kb on + strand, within DDA3937_RS04340 at 953.706 kb on + strand, within DDA3937_RS04340 at 953.707 kb on - strand, within DDA3937_RS04340 at 953.843 kb on + strand, within DDA3937_RS04340 at 953.843 kb on + strand, within DDA3937_RS04340 at 953.844 kb on - strand, within DDA3937_RS04340 at 953.844 kb on - strand, within DDA3937_RS04340 at 953.844 kb on - strand, within DDA3937_RS04340 at 953.844 kb on - strand, within DDA3937_RS04340 at 953.844 kb on - strand, within DDA3937_RS04340 at 953.962 kb on + strand, within DDA3937_RS04340 at 953.962 kb on + strand, within DDA3937_RS04340 at 953.962 kb on + strand, within DDA3937_RS04340 at 953.963 kb on - strand, within DDA3937_RS04340 at 953.963 kb on - strand, within DDA3937_RS04340 at 953.963 kb on - strand, within DDA3937_RS04340 at 953.963 kb on - strand, within DDA3937_RS04340 at 953.965 kb on + strand, within DDA3937_RS04340 at 953.966 kb on - strand, within DDA3937_RS04340 at 953.966 kb on - strand, within DDA3937_RS04340 at 953.981 kb on + strand, within DDA3937_RS04340 at 953.981 kb on + strand, within DDA3937_RS04340 at 953.981 kb on + strand, within DDA3937_RS04340 at 953.982 kb on - strand, within DDA3937_RS04340 at 954.036 kb on - strand, within DDA3937_RS04340 at 954.046 kb on + strand, within DDA3937_RS04340 at 954.168 kb on - strand, within DDA3937_RS04340 at 954.168 kb on - strand, within DDA3937_RS04340 at 954.304 kb on + strand, within DDA3937_RS04340 at 954.393 kb on + strand, within DDA3937_RS04340 at 954.393 kb on + strand, within DDA3937_RS04340 at 954.394 kb on - strand, within DDA3937_RS04340 at 954.505 kb on + strand at 954.505 kb on + strand at 954.505 kb on + strand at 954.511 kb on + strand at 954.512 kb on - strand at 954.526 kb on + strand at 954.527 kb on - strand at 954.527 kb on - strand at 954.527 kb on - strand at 954.548 kb on + strand at 954.664 kb on + strand at 954.665 kb on - strand at 954.697 kb on - strand at 954.697 kb on - strand at 954.697 kb on - strand at 954.697 kb on - strand at 954.699 kb on + strand at 954.699 kb on + strand at 954.700 kb on - strand at 954.722 kb on - strand at 954.750 kb on + strand at 954.751 kb on - strand at 954.753 kb on + strand at 954.754 kb on - strand at 954.798 kb on + strand, within DDA3937_RS04345 at 954.799 kb on - strand, within DDA3937_RS04345 at 954.799 kb on - strand, within DDA3937_RS04345 at 954.799 kb on - strand, within DDA3937_RS04345 at 954.802 kb on + strand, within DDA3937_RS04345 at 954.802 kb on + strand, within DDA3937_RS04345 at 954.802 kb on + strand, within DDA3937_RS04345 at 954.802 kb on + strand, within DDA3937_RS04345 at 954.802 kb on + strand, within DDA3937_RS04345 at 954.802 kb on + strand, within DDA3937_RS04345 at 954.802 kb on + strand, within DDA3937_RS04345 at 954.802 kb on + strand, within DDA3937_RS04345 at 954.802 kb on + strand, within DDA3937_RS04345 at 954.802 kb on + strand, within DDA3937_RS04345 at 954.803 kb on - strand, within DDA3937_RS04345 at 954.803 kb on - strand, within DDA3937_RS04345 at 954.803 kb on - strand, within DDA3937_RS04345 at 954.803 kb on - strand, within DDA3937_RS04345 at 954.803 kb on - strand, within DDA3937_RS04345 at 954.803 kb on - strand, within DDA3937_RS04345 at 954.803 kb on - strand, within DDA3937_RS04345 at 954.859 kb on + strand, within DDA3937_RS04345 at 954.859 kb on + strand, within DDA3937_RS04345 at 954.859 kb on + strand, within DDA3937_RS04345 at 954.859 kb on + strand, within DDA3937_RS04345 at 954.859 kb on + strand, within DDA3937_RS04345 at 954.859 kb on + strand, within DDA3937_RS04345 at 954.860 kb on - strand, within DDA3937_RS04345 at 954.860 kb on - strand, within DDA3937_RS04345 at 954.860 kb on - strand, within DDA3937_RS04345 at 954.860 kb on - strand, within DDA3937_RS04345 at 954.892 kb on + strand, within DDA3937_RS04345 at 954.892 kb on + strand, within DDA3937_RS04345 at 954.892 kb on + strand, within DDA3937_RS04345 at 954.892 kb on + strand, within DDA3937_RS04345 at 954.893 kb on - strand, within DDA3937_RS04345 at 954.917 kb on + strand, within DDA3937_RS04345 at 954.918 kb on - strand, within DDA3937_RS04345 at 954.947 kb on - strand, within DDA3937_RS04345 at 955.029 kb on + strand, within DDA3937_RS04345 at 955.062 kb on - strand, within DDA3937_RS04345 at 955.090 kb on + strand, within DDA3937_RS04345 at 955.090 kb on + strand, within DDA3937_RS04345 at 955.090 kb on + strand, within DDA3937_RS04345 at 955.090 kb on + strand, within DDA3937_RS04345 at 955.090 kb on + strand, within DDA3937_RS04345 at 955.090 kb on + strand, within DDA3937_RS04345 at 955.090 kb on + strand, within DDA3937_RS04345 at 955.090 kb on + strand, within DDA3937_RS04345 at 955.091 kb on - strand, within DDA3937_RS04345 at 955.091 kb on - strand, within DDA3937_RS04345 at 955.091 kb on - strand, within DDA3937_RS04345 at 955.091 kb on - strand, within DDA3937_RS04345 at 955.091 kb on - strand, within DDA3937_RS04345 at 955.091 kb on - strand, within DDA3937_RS04345 at 955.091 kb on - strand, within DDA3937_RS04345 at 955.091 kb on - strand, within DDA3937_RS04345 at 955.091 kb on - strand, within DDA3937_RS04345 at 955.091 kb on - strand, within DDA3937_RS04345 at 955.159 kb on - strand, within DDA3937_RS04345 at 955.192 kb on - strand, within DDA3937_RS04345 at 955.249 kb on - strand, within DDA3937_RS04345 at 955.260 kb on + strand, within DDA3937_RS04345 at 955.260 kb on + strand, within DDA3937_RS04345 at 955.261 kb on - strand, within DDA3937_RS04345 at 955.329 kb on - strand at 955.340 kb on + strand at 955.341 kb on - strand at 955.346 kb on + strand at 955.346 kb on + strand at 955.403 kb on - strand at 955.403 kb on - strand at 955.403 kb on - strand at 955.403 kb on - strand at 955.499 kb on + strand, within DDA3937_RS04350 at 955.499 kb on + strand, within DDA3937_RS04350 at 955.499 kb on + strand, within DDA3937_RS04350 at 955.500 kb on - strand, within DDA3937_RS04350 at 955.500 kb on - strand, within DDA3937_RS04350 at 955.500 kb on - strand, within DDA3937_RS04350
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 952,945 - -0.1 953,038 + -1.5 953,038 + -2.3 953,039 - -0.2 953,050 + +0.5 953,051 - -0.5 953,051 - -0.6 953,051 - -1.3 953,051 - -0.9 953,100 + -0.7 953,101 - -0.1 953,101 - +0.4 953,104 + +0.4 953,104 + -1.8 953,105 - -0.1 953,138 + -0.9 953,138 + -0.2 953,142 + -0.3 953,143 - -1.8 953,179 + -0.2 953,179 + -0.7 953,180 - -0.4 953,180 - +0.8 953,194 + -0.3 953,194 + -0.4 953,195 - -0.2 953,195 - +0.3 953,195 - -0.3 953,195 - +0.2 953,198 + -0.1 953,198 + +0.5 953,198 + -0.6 953,198 + -1.9 953,198 + -0.4 953,199 - -1.4 953,201 + -0.3 953,202 - +1.6 953,202 - +1.1 953,236 + +0.9 953,236 + +0.3 953,236 + -1.3 953,237 - +0.3 953,237 - -0.5 953,237 - -1.0 953,237 - -0.9 953,242 - +0.4 953,309 + +1.1 953,312 + +1.5 953,312 + -2.1 953,321 - -1.4 953,326 + +0.4 953,327 - -0.8 953,327 - -0.4 953,327 - +0.5 953,327 - -2.3 953,327 - -1.2 953,327 - -2.6 953,327 - -1.1 953,327 - -0.9 953,335 + +0.2 953,341 + +0.0 953,341 + -0.4 953,341 + -1.3 953,342 - +0.4 953,358 + -0.6 953,359 - -0.9 953,377 + -0.8 953,377 + -0.5 953,377 + -2.3 953,377 + -0.2 953,435 + -0.8 953,436 - +0.4 953,438 - -0.2 953,544 + DDA3937_RS04340 0.16 -0.9 953,593 + DDA3937_RS04340 0.20 -0.5 953,593 + DDA3937_RS04340 0.20 -0.3 953,594 - DDA3937_RS04340 0.20 -1.5 953,594 - DDA3937_RS04340 0.20 -0.2 953,701 + DDA3937_RS04340 0.29 -0.4 953,706 + DDA3937_RS04340 0.29 +1.4 953,706 + DDA3937_RS04340 0.29 -0.4 953,707 - DDA3937_RS04340 0.30 +1.1 953,843 + DDA3937_RS04340 0.41 -0.5 953,843 + DDA3937_RS04340 0.41 -0.5 953,844 - DDA3937_RS04340 0.41 -0.7 953,844 - DDA3937_RS04340 0.41 -1.7 953,844 - DDA3937_RS04340 0.41 -0.4 953,844 - DDA3937_RS04340 0.41 -0.9 953,844 - DDA3937_RS04340 0.41 -0.5 953,962 + DDA3937_RS04340 0.50 -0.8 953,962 + DDA3937_RS04340 0.50 +0.6 953,962 + DDA3937_RS04340 0.50 -0.3 953,963 - DDA3937_RS04340 0.50 +0.3 953,963 - DDA3937_RS04340 0.50 -1.9 953,963 - DDA3937_RS04340 0.50 -1.2 953,963 - DDA3937_RS04340 0.50 -2.8 953,965 + DDA3937_RS04340 0.50 -0.2 953,966 - DDA3937_RS04340 0.50 -0.3 953,966 - DDA3937_RS04340 0.50 -0.3 953,981 + DDA3937_RS04340 0.52 +0.5 953,981 + DDA3937_RS04340 0.52 +1.1 953,981 + DDA3937_RS04340 0.52 -0.2 953,982 - DDA3937_RS04340 0.52 -1.2 954,036 - DDA3937_RS04340 0.56 -0.3 954,046 + DDA3937_RS04340 0.57 -0.1 954,168 - DDA3937_RS04340 0.67 -1.3 954,168 - DDA3937_RS04340 0.67 +0.5 954,304 + DDA3937_RS04340 0.78 -0.2 954,393 + DDA3937_RS04340 0.85 -0.9 954,393 + DDA3937_RS04340 0.85 +0.1 954,394 - DDA3937_RS04340 0.85 -2.1 954,505 + -1.0 954,505 + +0.9 954,505 + +0.2 954,511 + +0.2 954,512 - -0.1 954,526 + +0.5 954,527 - -0.5 954,527 - +0.1 954,527 - +0.5 954,548 + +1.8 954,664 + -0.2 954,665 - -1.8 954,697 - -0.5 954,697 - +0.2 954,697 - -0.5 954,697 - +0.7 954,699 + +0.1 954,699 + -0.9 954,700 - +1.1 954,722 - -0.4 954,750 + -0.2 954,751 - -1.5 954,753 + +0.2 954,754 - -0.8 954,798 + DDA3937_RS04345 0.11 -1.1 954,799 - DDA3937_RS04345 0.11 -0.8 954,799 - DDA3937_RS04345 0.11 -0.3 954,799 - DDA3937_RS04345 0.11 -0.2 954,802 + DDA3937_RS04345 0.11 +0.4 954,802 + DDA3937_RS04345 0.11 -0.4 954,802 + DDA3937_RS04345 0.11 -0.5 954,802 + DDA3937_RS04345 0.11 +0.5 954,802 + DDA3937_RS04345 0.11 +0.4 954,802 + DDA3937_RS04345 0.11 -0.2 954,802 + DDA3937_RS04345 0.11 -0.5 954,802 + DDA3937_RS04345 0.11 -0.6 954,802 + DDA3937_RS04345 0.11 +1.1 954,802 + DDA3937_RS04345 0.11 -0.8 954,803 - DDA3937_RS04345 0.11 +0.1 954,803 - DDA3937_RS04345 0.11 -0.4 954,803 - DDA3937_RS04345 0.11 +0.5 954,803 - DDA3937_RS04345 0.11 -1.1 954,803 - DDA3937_RS04345 0.11 +0.3 954,803 - DDA3937_RS04345 0.11 -0.1 954,803 - DDA3937_RS04345 0.11 -0.4 954,859 + DDA3937_RS04345 0.21 -0.4 954,859 + DDA3937_RS04345 0.21 +0.5 954,859 + DDA3937_RS04345 0.21 +0.3 954,859 + DDA3937_RS04345 0.21 +0.1 954,859 + DDA3937_RS04345 0.21 -0.0 954,859 + DDA3937_RS04345 0.21 +0.8 954,860 - DDA3937_RS04345 0.21 -0.4 954,860 - DDA3937_RS04345 0.21 -0.6 954,860 - DDA3937_RS04345 0.21 -0.1 954,860 - DDA3937_RS04345 0.21 -1.1 954,892 + DDA3937_RS04345 0.27 -0.1 954,892 + DDA3937_RS04345 0.27 -0.1 954,892 + DDA3937_RS04345 0.27 -1.4 954,892 + DDA3937_RS04345 0.27 -0.8 954,893 - DDA3937_RS04345 0.27 -0.8 954,917 + DDA3937_RS04345 0.31 -0.8 954,918 - DDA3937_RS04345 0.31 -0.6 954,947 - DDA3937_RS04345 0.36 -1.1 955,029 + DDA3937_RS04345 0.50 +0.5 955,062 - DDA3937_RS04345 0.56 -0.8 955,090 + DDA3937_RS04345 0.61 -0.9 955,090 + DDA3937_RS04345 0.61 +0.1 955,090 + DDA3937_RS04345 0.61 +0.2 955,090 + DDA3937_RS04345 0.61 +0.2 955,090 + DDA3937_RS04345 0.61 -0.0 955,090 + DDA3937_RS04345 0.61 -1.3 955,090 + DDA3937_RS04345 0.61 -0.1 955,090 + DDA3937_RS04345 0.61 -0.6 955,091 - DDA3937_RS04345 0.61 -1.1 955,091 - DDA3937_RS04345 0.61 -0.9 955,091 - DDA3937_RS04345 0.61 -0.6 955,091 - DDA3937_RS04345 0.61 -0.5 955,091 - DDA3937_RS04345 0.61 +0.6 955,091 - DDA3937_RS04345 0.61 -0.8 955,091 - DDA3937_RS04345 0.61 -1.2 955,091 - DDA3937_RS04345 0.61 +0.2 955,091 - DDA3937_RS04345 0.61 -0.0 955,091 - DDA3937_RS04345 0.61 -0.9 955,159 - DDA3937_RS04345 0.72 +1.1 955,192 - DDA3937_RS04345 0.78 -0.3 955,249 - DDA3937_RS04345 0.88 -0.5 955,260 + DDA3937_RS04345 0.90 +0.7 955,260 + DDA3937_RS04345 0.90 +0.2 955,261 - DDA3937_RS04345 0.90 -0.0 955,329 - -0.5 955,340 + +0.1 955,341 - +0.9 955,346 + -1.4 955,346 + +0.7 955,403 - +0.1 955,403 - -1.5 955,403 - +0.1 955,403 - -0.5 955,499 + DDA3937_RS04350 0.10 +0.7 955,499 + DDA3937_RS04350 0.10 -0.5 955,499 + DDA3937_RS04350 0.10 -0.5 955,500 - DDA3937_RS04350 0.10 +0.6 955,500 - DDA3937_RS04350 0.10 -0.3 955,500 - DDA3937_RS04350 0.10 -0.3
Or see this region's nucleotide sequence