Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS04305 and DDA3937_RS04310 are separated by 155 nucleotides DDA3937_RS04310 and DDA3937_RS04315 overlap by 8 nucleotides DDA3937_RS04315 and DDA3937_RS04320 are separated by 56 nucleotides DDA3937_RS04320 and DDA3937_RS04325 are separated by 111 nucleotides
DDA3937_RS04305: DDA3937_RS04305 - SsrA-binding protein SmpB, at 947,711 to 948,193
_RS04305
DDA3937_RS04310: DDA3937_RS04310 - type II toxin-antitoxin system RatA family toxin, at 948,349 to 948,783
_RS04310
DDA3937_RS04315: DDA3937_RS04315 - RnfH family protein, at 948,776 to 949,069
_RS04315
DDA3937_RS04320: DDA3937_RS04320 - outer membrane protein assembly factor BamE, at 949,126 to 949,470
_RS04320
DDA3937_RS04325: DDA3937_RS04325 - DNA repair protein RecN, at 949,582 to 951,243
_RS04325
Position (kb) 948
949
950 Strain fitness (log2 ratio) -2
-1
0
1
2 at 948.030 kb on + strand, within DDA3937_RS04305 at 948.031 kb on - strand, within DDA3937_RS04305 at 948.031 kb on - strand, within DDA3937_RS04305 at 948.116 kb on + strand, within DDA3937_RS04305 at 948.172 kb on + strand at 948.173 kb on - strand at 948.205 kb on + strand at 948.206 kb on - strand at 948.206 kb on - strand at 948.208 kb on - strand at 948.208 kb on - strand at 948.208 kb on - strand at 948.208 kb on - strand at 948.208 kb on - strand at 948.248 kb on + strand at 948.248 kb on + strand at 948.249 kb on - strand at 948.313 kb on - strand at 948.313 kb on - strand at 948.313 kb on - strand at 948.315 kb on + strand at 948.315 kb on + strand at 948.316 kb on - strand at 948.348 kb on + strand at 948.547 kb on - strand, within DDA3937_RS04310 at 948.568 kb on - strand, within DDA3937_RS04310 at 948.568 kb on - strand, within DDA3937_RS04310 at 948.732 kb on + strand, within DDA3937_RS04310 at 948.772 kb on + strand at 948.773 kb on - strand at 948.804 kb on - strand at 948.804 kb on - strand at 948.825 kb on - strand, within DDA3937_RS04315 at 948.825 kb on - strand, within DDA3937_RS04315 at 948.825 kb on - strand, within DDA3937_RS04315 at 948.926 kb on - strand, within DDA3937_RS04315 at 949.026 kb on + strand, within DDA3937_RS04315 at 949.027 kb on - strand, within DDA3937_RS04315 at 949.027 kb on - strand, within DDA3937_RS04315 at 949.127 kb on + strand at 949.128 kb on - strand at 949.128 kb on - strand at 949.244 kb on + strand, within DDA3937_RS04320 at 949.244 kb on + strand, within DDA3937_RS04320 at 949.244 kb on + strand, within DDA3937_RS04320 at 949.244 kb on + strand, within DDA3937_RS04320 at 949.245 kb on - strand, within DDA3937_RS04320 at 949.245 kb on - strand, within DDA3937_RS04320 at 949.245 kb on - strand, within DDA3937_RS04320 at 949.245 kb on - strand, within DDA3937_RS04320 at 949.245 kb on - strand, within DDA3937_RS04320 at 949.245 kb on - strand, within DDA3937_RS04320 at 949.245 kb on - strand, within DDA3937_RS04320 at 949.245 kb on - strand, within DDA3937_RS04320 at 949.245 kb on - strand, within DDA3937_RS04320 at 949.247 kb on + strand, within DDA3937_RS04320 at 949.247 kb on + strand, within DDA3937_RS04320 at 949.247 kb on + strand, within DDA3937_RS04320 at 949.247 kb on + strand, within DDA3937_RS04320 at 949.298 kb on + strand, within DDA3937_RS04320 at 949.298 kb on + strand, within DDA3937_RS04320 at 949.298 kb on + strand, within DDA3937_RS04320 at 949.298 kb on + strand, within DDA3937_RS04320 at 949.299 kb on - strand, within DDA3937_RS04320 at 949.299 kb on - strand, within DDA3937_RS04320 at 949.299 kb on - strand, within DDA3937_RS04320 at 949.358 kb on + strand, within DDA3937_RS04320 at 949.358 kb on + strand, within DDA3937_RS04320 at 949.358 kb on + strand, within DDA3937_RS04320 at 949.358 kb on + strand, within DDA3937_RS04320 at 949.358 kb on + strand, within DDA3937_RS04320 at 949.358 kb on + strand, within DDA3937_RS04320 at 949.359 kb on - strand, within DDA3937_RS04320 at 949.359 kb on - strand, within DDA3937_RS04320 at 949.359 kb on - strand, within DDA3937_RS04320 at 949.359 kb on - strand, within DDA3937_RS04320 at 949.390 kb on + strand, within DDA3937_RS04320 at 949.390 kb on + strand, within DDA3937_RS04320 at 949.391 kb on - strand, within DDA3937_RS04320 at 949.391 kb on - strand, within DDA3937_RS04320 at 949.391 kb on - strand, within DDA3937_RS04320 at 949.425 kb on + strand, within DDA3937_RS04320 at 949.425 kb on + strand, within DDA3937_RS04320 at 949.426 kb on - strand, within DDA3937_RS04320 at 949.426 kb on - strand, within DDA3937_RS04320 at 949.426 kb on - strand, within DDA3937_RS04320 at 949.470 kb on + strand at 949.470 kb on + strand at 949.471 kb on - strand at 949.477 kb on + strand at 949.477 kb on + strand at 949.478 kb on - strand at 949.478 kb on - strand at 949.494 kb on + strand at 949.494 kb on + strand at 949.495 kb on - strand at 949.495 kb on - strand at 949.495 kb on - strand at 949.495 kb on - strand at 949.495 kb on - strand at 949.495 kb on - strand at 949.495 kb on - strand at 949.495 kb on - strand at 949.495 kb on - strand at 949.495 kb on - strand at 949.508 kb on + strand at 949.508 kb on + strand at 949.508 kb on + strand at 949.508 kb on + strand at 949.509 kb on - strand at 949.509 kb on - strand at 949.511 kb on + strand at 949.511 kb on + strand at 949.512 kb on - strand at 949.512 kb on - strand at 949.512 kb on - strand at 949.512 kb on - strand at 949.549 kb on - strand at 949.737 kb on - strand at 949.737 kb on - strand at 949.760 kb on - strand, within DDA3937_RS04325 at 949.909 kb on - strand, within DDA3937_RS04325 at 949.917 kb on + strand, within DDA3937_RS04325 at 949.918 kb on - strand, within DDA3937_RS04325 at 949.918 kb on - strand, within DDA3937_RS04325 at 949.918 kb on - strand, within DDA3937_RS04325
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 948,030 + DDA3937_RS04305 0.66 -0.3 948,031 - DDA3937_RS04305 0.66 +0.2 948,031 - DDA3937_RS04305 0.66 +1.6 948,116 + DDA3937_RS04305 0.84 +1.1 948,172 + -0.9 948,173 - +2.1 948,205 + +0.1 948,206 - -1.4 948,206 - -0.3 948,208 - -0.8 948,208 - +1.4 948,208 - +1.3 948,208 - -0.6 948,208 - -0.6 948,248 + +0.1 948,248 + -1.4 948,249 - +0.7 948,313 - -0.6 948,313 - -2.1 948,313 - -2.4 948,315 + -0.9 948,315 + +0.2 948,316 - +0.6 948,348 + +0.1 948,547 - DDA3937_RS04310 0.46 -2.1 948,568 - DDA3937_RS04310 0.50 +0.3 948,568 - DDA3937_RS04310 0.50 +0.1 948,732 + DDA3937_RS04310 0.88 -1.2 948,772 + -0.7 948,773 - +1.1 948,804 - +0.8 948,804 - -1.5 948,825 - DDA3937_RS04315 0.17 -1.4 948,825 - DDA3937_RS04315 0.17 +0.2 948,825 - DDA3937_RS04315 0.17 -0.6 948,926 - DDA3937_RS04315 0.51 -0.5 949,026 + DDA3937_RS04315 0.85 -0.5 949,027 - DDA3937_RS04315 0.85 -1.4 949,027 - DDA3937_RS04315 0.85 -0.9 949,127 + -0.5 949,128 - +0.1 949,128 - -0.5 949,244 + DDA3937_RS04320 0.34 -0.3 949,244 + DDA3937_RS04320 0.34 -0.5 949,244 + DDA3937_RS04320 0.34 -1.9 949,244 + DDA3937_RS04320 0.34 -0.3 949,245 - DDA3937_RS04320 0.34 -0.1 949,245 - DDA3937_RS04320 0.34 -0.3 949,245 - DDA3937_RS04320 0.34 -1.8 949,245 - DDA3937_RS04320 0.34 +0.3 949,245 - DDA3937_RS04320 0.34 +0.6 949,245 - DDA3937_RS04320 0.34 -0.5 949,245 - DDA3937_RS04320 0.34 -1.3 949,245 - DDA3937_RS04320 0.34 -1.9 949,245 - DDA3937_RS04320 0.34 -0.3 949,247 + DDA3937_RS04320 0.35 -0.2 949,247 + DDA3937_RS04320 0.35 -0.4 949,247 + DDA3937_RS04320 0.35 -0.2 949,247 + DDA3937_RS04320 0.35 -0.5 949,298 + DDA3937_RS04320 0.50 -0.3 949,298 + DDA3937_RS04320 0.50 +0.1 949,298 + DDA3937_RS04320 0.50 +1.4 949,298 + DDA3937_RS04320 0.50 -1.6 949,299 - DDA3937_RS04320 0.50 -1.2 949,299 - DDA3937_RS04320 0.50 -0.9 949,299 - DDA3937_RS04320 0.50 -1.5 949,358 + DDA3937_RS04320 0.67 +0.4 949,358 + DDA3937_RS04320 0.67 -0.5 949,358 + DDA3937_RS04320 0.67 +1.1 949,358 + DDA3937_RS04320 0.67 -0.4 949,358 + DDA3937_RS04320 0.67 -0.5 949,358 + DDA3937_RS04320 0.67 -0.5 949,359 - DDA3937_RS04320 0.68 -2.5 949,359 - DDA3937_RS04320 0.68 -0.1 949,359 - DDA3937_RS04320 0.68 -0.5 949,359 - DDA3937_RS04320 0.68 -0.6 949,390 + DDA3937_RS04320 0.77 -0.3 949,390 + DDA3937_RS04320 0.77 +0.3 949,391 - DDA3937_RS04320 0.77 -0.7 949,391 - DDA3937_RS04320 0.77 +1.2 949,391 - DDA3937_RS04320 0.77 -1.6 949,425 + DDA3937_RS04320 0.87 +0.1 949,425 + DDA3937_RS04320 0.87 -0.9 949,426 - DDA3937_RS04320 0.87 -0.5 949,426 - DDA3937_RS04320 0.87 +0.2 949,426 - DDA3937_RS04320 0.87 +0.4 949,470 + -0.5 949,470 + -0.2 949,471 - -1.8 949,477 + -1.1 949,477 + -1.8 949,478 - +0.2 949,478 - -0.5 949,494 + -1.3 949,494 + -0.9 949,495 - -0.8 949,495 - +0.1 949,495 - -0.8 949,495 - -0.2 949,495 - +0.6 949,495 - +0.1 949,495 - -0.2 949,495 - -0.5 949,495 - -0.4 949,495 - -0.9 949,508 + +0.3 949,508 + -1.5 949,508 + -0.9 949,508 + +0.1 949,509 - -0.5 949,509 - -0.2 949,511 + -0.2 949,511 + -1.9 949,512 - +0.2 949,512 - +0.9 949,512 - -1.5 949,512 - +0.2 949,549 - -0.2 949,737 - -0.7 949,737 - -1.3 949,760 - DDA3937_RS04325 0.11 +0.1 949,909 - DDA3937_RS04325 0.20 +0.5 949,917 + DDA3937_RS04325 0.20 -0.4 949,918 - DDA3937_RS04325 0.20 +0.1 949,918 - DDA3937_RS04325 0.20 -0.5 949,918 - DDA3937_RS04325 0.20 +0.1
Or see this region's nucleotide sequence