Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS04275 and DDA3937_RS04280 overlap by 1 nucleotides DDA3937_RS04280 and DDA3937_RS04285 overlap by 4 nucleotides DDA3937_RS04285 and DDA3937_RS04290 overlap by 29 nucleotides
DDA3937_RS04275: DDA3937_RS04275 - phage tail protein, at 941,148 to 942,569
_RS04275
DDA3937_RS04280: DDA3937_RS04280 - tail fiber assembly protein, at 942,569 to 943,189
_RS04280
DDA3937_RS04285: DDA3937_RS04285 - hypothetical protein, at 943,186 to 943,911
_RS04285
DDA3937_RS04290: DDA3937_RS04290 - hypothetical protein, at 943,883 to 944,410
_RS04290
Position (kb) 942
943
944 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 941.630 kb on + strand, within DDA3937_RS04275 at 941.655 kb on + strand, within DDA3937_RS04275 at 941.655 kb on + strand, within DDA3937_RS04275 at 941.655 kb on + strand, within DDA3937_RS04275 at 941.656 kb on - strand, within DDA3937_RS04275 at 941.656 kb on - strand, within DDA3937_RS04275 at 941.656 kb on - strand, within DDA3937_RS04275 at 941.685 kb on + strand, within DDA3937_RS04275 at 941.685 kb on + strand, within DDA3937_RS04275 at 941.685 kb on + strand, within DDA3937_RS04275 at 941.712 kb on + strand, within DDA3937_RS04275 at 941.712 kb on + strand, within DDA3937_RS04275 at 941.712 kb on + strand, within DDA3937_RS04275 at 941.712 kb on + strand, within DDA3937_RS04275 at 941.712 kb on + strand, within DDA3937_RS04275 at 941.712 kb on + strand, within DDA3937_RS04275 at 941.713 kb on - strand, within DDA3937_RS04275 at 941.713 kb on - strand, within DDA3937_RS04275 at 941.713 kb on - strand, within DDA3937_RS04275 at 941.713 kb on - strand, within DDA3937_RS04275 at 941.719 kb on + strand, within DDA3937_RS04275 at 941.720 kb on - strand, within DDA3937_RS04275 at 941.750 kb on + strand, within DDA3937_RS04275 at 941.751 kb on - strand, within DDA3937_RS04275 at 941.751 kb on - strand, within DDA3937_RS04275 at 941.774 kb on - strand, within DDA3937_RS04275 at 941.896 kb on + strand, within DDA3937_RS04275 at 941.896 kb on + strand, within DDA3937_RS04275 at 941.897 kb on - strand, within DDA3937_RS04275 at 941.897 kb on - strand, within DDA3937_RS04275 at 941.917 kb on - strand, within DDA3937_RS04275 at 941.917 kb on - strand, within DDA3937_RS04275 at 941.917 kb on - strand, within DDA3937_RS04275 at 941.917 kb on - strand, within DDA3937_RS04275 at 941.954 kb on + strand, within DDA3937_RS04275 at 941.954 kb on + strand, within DDA3937_RS04275 at 941.954 kb on + strand, within DDA3937_RS04275 at 941.955 kb on - strand, within DDA3937_RS04275 at 942.017 kb on + strand, within DDA3937_RS04275 at 942.040 kb on + strand, within DDA3937_RS04275 at 942.040 kb on + strand, within DDA3937_RS04275 at 942.041 kb on - strand, within DDA3937_RS04275 at 942.041 kb on - strand, within DDA3937_RS04275 at 942.041 kb on - strand, within DDA3937_RS04275 at 942.041 kb on - strand, within DDA3937_RS04275 at 942.092 kb on - strand, within DDA3937_RS04275 at 942.092 kb on - strand, within DDA3937_RS04275 at 942.125 kb on + strand, within DDA3937_RS04275 at 942.125 kb on + strand, within DDA3937_RS04275 at 942.126 kb on - strand, within DDA3937_RS04275 at 942.126 kb on - strand, within DDA3937_RS04275 at 942.126 kb on - strand, within DDA3937_RS04275 at 942.151 kb on + strand, within DDA3937_RS04275 at 942.151 kb on + strand, within DDA3937_RS04275 at 942.151 kb on + strand, within DDA3937_RS04275 at 942.151 kb on + strand, within DDA3937_RS04275 at 942.152 kb on - strand, within DDA3937_RS04275 at 942.152 kb on - strand, within DDA3937_RS04275 at 942.152 kb on - strand, within DDA3937_RS04275 at 942.152 kb on - strand, within DDA3937_RS04275 at 942.152 kb on - strand, within DDA3937_RS04275 at 942.152 kb on - strand, within DDA3937_RS04275 at 942.156 kb on - strand, within DDA3937_RS04275 at 942.206 kb on + strand, within DDA3937_RS04275 at 942.234 kb on + strand, within DDA3937_RS04275 at 942.234 kb on + strand, within DDA3937_RS04275 at 942.234 kb on + strand, within DDA3937_RS04275 at 942.234 kb on + strand, within DDA3937_RS04275 at 942.235 kb on - strand, within DDA3937_RS04275 at 942.235 kb on - strand, within DDA3937_RS04275 at 942.235 kb on - strand, within DDA3937_RS04275 at 942.235 kb on - strand, within DDA3937_RS04275 at 942.242 kb on - strand, within DDA3937_RS04275 at 942.244 kb on + strand, within DDA3937_RS04275 at 942.244 kb on + strand, within DDA3937_RS04275 at 942.244 kb on + strand at 942.245 kb on - strand, within DDA3937_RS04275 at 942.271 kb on + strand, within DDA3937_RS04275 at 942.340 kb on + strand, within DDA3937_RS04275 at 942.362 kb on + strand, within DDA3937_RS04275 at 942.374 kb on + strand, within DDA3937_RS04275 at 942.375 kb on - strand at 942.395 kb on - strand, within DDA3937_RS04275 at 942.395 kb on - strand, within DDA3937_RS04275 at 942.402 kb on - strand, within DDA3937_RS04275 at 942.451 kb on - strand at 942.451 kb on - strand at 942.451 kb on - strand at 942.452 kb on + strand at 942.452 kb on + strand at 942.452 kb on + strand at 942.452 kb on + strand at 942.452 kb on + strand at 942.452 kb on + strand at 942.452 kb on + strand at 942.453 kb on - strand at 942.453 kb on - strand at 942.453 kb on - strand at 942.453 kb on - strand at 942.453 kb on - strand at 942.453 kb on - strand at 942.458 kb on + strand at 942.470 kb on - strand at 942.470 kb on - strand at 942.470 kb on - strand at 942.474 kb on + strand at 942.475 kb on - strand at 942.516 kb on - strand at 942.516 kb on - strand at 942.545 kb on + strand at 942.545 kb on + strand at 942.545 kb on + strand at 942.546 kb on - strand at 942.549 kb on + strand at 942.549 kb on + strand at 942.549 kb on + strand at 942.550 kb on - strand at 942.550 kb on - strand at 942.550 kb on - strand at 942.553 kb on + strand at 942.553 kb on + strand at 942.553 kb on + strand at 942.553 kb on + strand at 942.554 kb on - strand at 942.554 kb on - strand at 942.554 kb on - strand at 942.554 kb on - strand at 942.554 kb on - strand at 942.554 kb on - strand at 942.568 kb on - strand at 942.577 kb on + strand at 942.578 kb on - strand at 942.578 kb on - strand at 942.650 kb on + strand, within DDA3937_RS04280 at 942.651 kb on - strand, within DDA3937_RS04280 at 942.651 kb on - strand, within DDA3937_RS04280 at 942.677 kb on + strand, within DDA3937_RS04280 at 942.677 kb on + strand, within DDA3937_RS04280 at 942.677 kb on + strand, within DDA3937_RS04280 at 942.678 kb on - strand, within DDA3937_RS04280 at 942.698 kb on + strand, within DDA3937_RS04280 at 942.698 kb on + strand, within DDA3937_RS04280 at 942.698 kb on + strand at 942.698 kb on + strand, within DDA3937_RS04280 at 942.698 kb on + strand, within DDA3937_RS04280 at 942.699 kb on - strand, within DDA3937_RS04280 at 942.699 kb on - strand, within DDA3937_RS04280 at 942.699 kb on - strand, within DDA3937_RS04280 at 942.719 kb on - strand, within DDA3937_RS04280 at 942.734 kb on + strand, within DDA3937_RS04280 at 942.735 kb on - strand, within DDA3937_RS04280 at 942.735 kb on - strand, within DDA3937_RS04280 at 942.806 kb on + strand, within DDA3937_RS04280 at 942.806 kb on + strand, within DDA3937_RS04280 at 942.807 kb on - strand, within DDA3937_RS04280 at 942.863 kb on - strand, within DDA3937_RS04280 at 942.876 kb on + strand, within DDA3937_RS04280 at 942.985 kb on + strand, within DDA3937_RS04280 at 942.985 kb on + strand, within DDA3937_RS04280 at 943.047 kb on + strand, within DDA3937_RS04280 at 943.047 kb on + strand, within DDA3937_RS04280 at 943.047 kb on + strand, within DDA3937_RS04280 at 943.048 kb on - strand, within DDA3937_RS04280 at 943.048 kb on - strand, within DDA3937_RS04280 at 943.048 kb on - strand, within DDA3937_RS04280 at 943.048 kb on - strand, within DDA3937_RS04280 at 943.048 kb on - strand, within DDA3937_RS04280 at 943.048 kb on - strand, within DDA3937_RS04280 at 943.090 kb on - strand, within DDA3937_RS04280 at 943.122 kb on + strand, within DDA3937_RS04280 at 943.138 kb on - strand at 943.138 kb on - strand at 943.138 kb on - strand at 943.143 kb on + strand at 943.143 kb on + strand at 943.143 kb on + strand at 943.143 kb on + strand at 943.144 kb on - strand at 943.144 kb on - strand at 943.206 kb on + strand at 943.206 kb on + strand at 943.207 kb on - strand at 943.270 kb on + strand, within DDA3937_RS04285 at 943.270 kb on + strand, within DDA3937_RS04285 at 943.271 kb on - strand, within DDA3937_RS04285 at 943.303 kb on + strand, within DDA3937_RS04285 at 943.303 kb on + strand, within DDA3937_RS04285 at 943.303 kb on + strand, within DDA3937_RS04285 at 943.304 kb on - strand, within DDA3937_RS04285 at 943.304 kb on - strand, within DDA3937_RS04285 at 943.308 kb on - strand, within DDA3937_RS04285 at 943.330 kb on + strand, within DDA3937_RS04285 at 943.330 kb on + strand, within DDA3937_RS04285 at 943.330 kb on + strand, within DDA3937_RS04285 at 943.331 kb on - strand, within DDA3937_RS04285 at 943.346 kb on + strand, within DDA3937_RS04285 at 943.347 kb on - strand, within DDA3937_RS04285 at 943.347 kb on - strand, within DDA3937_RS04285 at 943.415 kb on + strand, within DDA3937_RS04285 at 943.599 kb on + strand, within DDA3937_RS04285 at 943.600 kb on - strand, within DDA3937_RS04285 at 943.803 kb on + strand, within DDA3937_RS04285 at 943.825 kb on + strand, within DDA3937_RS04285 at 943.825 kb on + strand, within DDA3937_RS04285 at 943.826 kb on - strand, within DDA3937_RS04285 at 943.826 kb on - strand, within DDA3937_RS04285 at 943.828 kb on - strand, within DDA3937_RS04285 at 943.828 kb on - strand, within DDA3937_RS04285 at 943.845 kb on + strand at 943.893 kb on + strand at 943.893 kb on + strand at 943.894 kb on - strand at 943.894 kb on - strand at 943.898 kb on - strand at 943.898 kb on - strand at 943.922 kb on - strand at 944.116 kb on + strand, within DDA3937_RS04290 at 944.116 kb on + strand, within DDA3937_RS04290 at 944.116 kb on + strand, within DDA3937_RS04290 at 944.117 kb on - strand, within DDA3937_RS04290
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 941,630 + DDA3937_RS04275 0.34 -0.1 941,655 + DDA3937_RS04275 0.36 +0.1 941,655 + DDA3937_RS04275 0.36 -0.2 941,655 + DDA3937_RS04275 0.36 +0.6 941,656 - DDA3937_RS04275 0.36 +0.4 941,656 - DDA3937_RS04275 0.36 -0.8 941,656 - DDA3937_RS04275 0.36 +0.1 941,685 + DDA3937_RS04275 0.38 -0.7 941,685 + DDA3937_RS04275 0.38 +0.2 941,685 + DDA3937_RS04275 0.38 -1.5 941,712 + DDA3937_RS04275 0.40 +0.7 941,712 + DDA3937_RS04275 0.40 -0.3 941,712 + DDA3937_RS04275 0.40 +0.9 941,712 + DDA3937_RS04275 0.40 +1.3 941,712 + DDA3937_RS04275 0.40 -1.2 941,712 + DDA3937_RS04275 0.40 -0.4 941,713 - DDA3937_RS04275 0.40 -0.2 941,713 - DDA3937_RS04275 0.40 +2.2 941,713 - DDA3937_RS04275 0.40 -0.2 941,713 - DDA3937_RS04275 0.40 -0.0 941,719 + DDA3937_RS04275 0.40 -2.8 941,720 - DDA3937_RS04275 0.40 -0.8 941,750 + DDA3937_RS04275 0.42 -0.4 941,751 - DDA3937_RS04275 0.42 +0.1 941,751 - DDA3937_RS04275 0.42 -0.3 941,774 - DDA3937_RS04275 0.44 -0.7 941,896 + DDA3937_RS04275 0.53 +1.1 941,896 + DDA3937_RS04275 0.53 -0.1 941,897 - DDA3937_RS04275 0.53 -0.3 941,897 - DDA3937_RS04275 0.53 +1.2 941,917 - DDA3937_RS04275 0.54 -0.2 941,917 - DDA3937_RS04275 0.54 -0.7 941,917 - DDA3937_RS04275 0.54 -0.8 941,917 - DDA3937_RS04275 0.54 +1.4 941,954 + DDA3937_RS04275 0.57 -0.2 941,954 + DDA3937_RS04275 0.57 +0.1 941,954 + DDA3937_RS04275 0.57 +0.8 941,955 - DDA3937_RS04275 0.57 +0.2 942,017 + DDA3937_RS04275 0.61 -0.1 942,040 + DDA3937_RS04275 0.63 -0.8 942,040 + DDA3937_RS04275 0.63 -2.9 942,041 - DDA3937_RS04275 0.63 +0.6 942,041 - DDA3937_RS04275 0.63 -0.4 942,041 - DDA3937_RS04275 0.63 -0.4 942,041 - DDA3937_RS04275 0.63 -0.7 942,092 - DDA3937_RS04275 0.66 +0.1 942,092 - DDA3937_RS04275 0.66 -0.1 942,125 + DDA3937_RS04275 0.69 +1.2 942,125 + DDA3937_RS04275 0.69 -1.3 942,126 - DDA3937_RS04275 0.69 +0.5 942,126 - DDA3937_RS04275 0.69 -1.1 942,126 - DDA3937_RS04275 0.69 +0.3 942,151 + DDA3937_RS04275 0.71 +0.1 942,151 + DDA3937_RS04275 0.71 -0.8 942,151 + DDA3937_RS04275 0.71 -0.9 942,151 + DDA3937_RS04275 0.71 -1.3 942,152 - DDA3937_RS04275 0.71 -1.5 942,152 - DDA3937_RS04275 0.71 -1.4 942,152 - DDA3937_RS04275 0.71 -0.4 942,152 - DDA3937_RS04275 0.71 +0.1 942,152 - DDA3937_RS04275 0.71 -1.3 942,152 - DDA3937_RS04275 0.71 +0.0 942,156 - DDA3937_RS04275 0.71 -0.7 942,206 + DDA3937_RS04275 0.74 +1.1 942,234 + DDA3937_RS04275 0.76 +0.5 942,234 + DDA3937_RS04275 0.76 +0.3 942,234 + DDA3937_RS04275 0.76 +0.1 942,234 + DDA3937_RS04275 0.76 -0.6 942,235 - DDA3937_RS04275 0.76 -0.3 942,235 - DDA3937_RS04275 0.76 -0.8 942,235 - DDA3937_RS04275 0.76 -1.6 942,235 - DDA3937_RS04275 0.76 -0.3 942,242 - DDA3937_RS04275 0.77 -0.5 942,244 + DDA3937_RS04275 0.77 +0.1 942,244 + DDA3937_RS04275 0.77 -0.1 942,244 + +2.1 942,245 - DDA3937_RS04275 0.77 +0.0 942,271 + DDA3937_RS04275 0.79 -0.1 942,340 + DDA3937_RS04275 0.84 -0.2 942,362 + DDA3937_RS04275 0.85 -0.5 942,374 + DDA3937_RS04275 0.86 -0.4 942,375 - +0.3 942,395 - DDA3937_RS04275 0.88 -0.5 942,395 - DDA3937_RS04275 0.88 +0.7 942,402 - DDA3937_RS04275 0.88 +0.3 942,451 - -0.9 942,451 - +0.5 942,451 - -0.9 942,452 + -2.1 942,452 + -1.5 942,452 + +0.4 942,452 + +0.5 942,452 + +0.4 942,452 + -0.8 942,452 + +0.1 942,453 - -0.0 942,453 - +0.5 942,453 - +1.1 942,453 - -0.4 942,453 - -0.4 942,453 - -1.3 942,458 + -1.1 942,470 - -1.1 942,470 - +0.6 942,470 - -1.2 942,474 + -0.3 942,475 - +0.3 942,516 - +0.2 942,516 - +0.2 942,545 + +0.5 942,545 + -1.6 942,545 + +0.5 942,546 - -0.0 942,549 + -0.5 942,549 + -0.7 942,549 + +0.6 942,550 - -0.9 942,550 - -0.2 942,550 - -1.8 942,553 + -0.9 942,553 + +0.2 942,553 + -0.2 942,553 + -1.8 942,554 - +0.3 942,554 - +0.1 942,554 - +0.1 942,554 - -1.1 942,554 - -1.0 942,554 - -1.2 942,568 - -0.4 942,577 + +0.3 942,578 - -0.5 942,578 - -0.7 942,650 + DDA3937_RS04280 0.13 +0.6 942,651 - DDA3937_RS04280 0.13 -2.0 942,651 - DDA3937_RS04280 0.13 +1.2 942,677 + DDA3937_RS04280 0.17 -0.4 942,677 + DDA3937_RS04280 0.17 +0.1 942,677 + DDA3937_RS04280 0.17 +0.1 942,678 - DDA3937_RS04280 0.18 -0.5 942,698 + DDA3937_RS04280 0.21 +2.1 942,698 + DDA3937_RS04280 0.21 +1.4 942,698 + -1.5 942,698 + DDA3937_RS04280 0.21 -0.1 942,698 + DDA3937_RS04280 0.21 +1.1 942,699 - DDA3937_RS04280 0.21 +0.4 942,699 - DDA3937_RS04280 0.21 -0.1 942,699 - DDA3937_RS04280 0.21 +0.4 942,719 - DDA3937_RS04280 0.24 -0.6 942,734 + DDA3937_RS04280 0.27 +0.7 942,735 - DDA3937_RS04280 0.27 -1.3 942,735 - DDA3937_RS04280 0.27 -2.6 942,806 + DDA3937_RS04280 0.38 +0.6 942,806 + DDA3937_RS04280 0.38 +0.1 942,807 - DDA3937_RS04280 0.38 +0.3 942,863 - DDA3937_RS04280 0.47 -0.0 942,876 + DDA3937_RS04280 0.49 +0.1 942,985 + DDA3937_RS04280 0.67 +0.8 942,985 + DDA3937_RS04280 0.67 -0.0 943,047 + DDA3937_RS04280 0.77 -0.7 943,047 + DDA3937_RS04280 0.77 +0.5 943,047 + DDA3937_RS04280 0.77 +0.8 943,048 - DDA3937_RS04280 0.77 +1.4 943,048 - DDA3937_RS04280 0.77 -0.5 943,048 - DDA3937_RS04280 0.77 +0.3 943,048 - DDA3937_RS04280 0.77 +0.5 943,048 - DDA3937_RS04280 0.77 -0.9 943,048 - DDA3937_RS04280 0.77 +0.3 943,090 - DDA3937_RS04280 0.84 +0.6 943,122 + DDA3937_RS04280 0.89 +1.1 943,138 - -0.6 943,138 - +0.1 943,138 - -0.3 943,143 + -0.4 943,143 + +0.2 943,143 + +1.1 943,143 + -0.6 943,144 - -0.2 943,144 - -1.5 943,206 + +0.2 943,206 + -0.8 943,207 - -0.2 943,270 + DDA3937_RS04285 0.12 -0.3 943,270 + DDA3937_RS04285 0.12 +0.1 943,271 - DDA3937_RS04285 0.12 +0.8 943,303 + DDA3937_RS04285 0.16 +0.2 943,303 + DDA3937_RS04285 0.16 -0.2 943,303 + DDA3937_RS04285 0.16 +0.2 943,304 - DDA3937_RS04285 0.16 -2.1 943,304 - DDA3937_RS04285 0.16 +0.1 943,308 - DDA3937_RS04285 0.17 +0.3 943,330 + DDA3937_RS04285 0.20 +1.6 943,330 + DDA3937_RS04285 0.20 -0.5 943,330 + DDA3937_RS04285 0.20 -1.1 943,331 - DDA3937_RS04285 0.20 +0.1 943,346 + DDA3937_RS04285 0.22 -0.0 943,347 - DDA3937_RS04285 0.22 +1.1 943,347 - DDA3937_RS04285 0.22 -0.3 943,415 + DDA3937_RS04285 0.32 +0.5 943,599 + DDA3937_RS04285 0.57 -0.8 943,600 - DDA3937_RS04285 0.57 -0.5 943,803 + DDA3937_RS04285 0.85 +1.1 943,825 + DDA3937_RS04285 0.88 -2.1 943,825 + DDA3937_RS04285 0.88 -1.0 943,826 - DDA3937_RS04285 0.88 +0.3 943,826 - DDA3937_RS04285 0.88 +2.5 943,828 - DDA3937_RS04285 0.88 +0.3 943,828 - DDA3937_RS04285 0.88 -0.5 943,845 + -1.1 943,893 + -0.8 943,893 + -0.2 943,894 - +0.1 943,894 - -1.8 943,898 - +0.3 943,898 - -1.2 943,922 - +0.5 944,116 + DDA3937_RS04290 0.44 +0.6 944,116 + DDA3937_RS04290 0.44 +0.2 944,116 + DDA3937_RS04290 0.44 -0.2 944,117 - DDA3937_RS04290 0.44 -0.0
Or see this region's nucleotide sequence