Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS04195 and DDA3937_RS04200 are separated by 54 nucleotides DDA3937_RS04200 and DDA3937_RS04205 are separated by 3 nucleotides DDA3937_RS04205 and DDA3937_RS04210 are separated by 96 nucleotides
DDA3937_RS04195: DDA3937_RS04195 - GPO family capsid scaffolding protein, at 929,523 to 930,359
_RS04195
DDA3937_RS04200: DDA3937_RS04200 - phage major capsid protein, P2 family, at 930,414 to 931,445
_RS04200
DDA3937_RS04205: DDA3937_RS04205 - terminase, at 931,449 to 932,150
_RS04205
DDA3937_RS04210: DDA3937_RS04210 - head completion/stabilization protein, at 932,247 to 932,699
_RS04210
Position (kb) 930
931
932 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 929.580 kb on - strand at 929.626 kb on - strand, within DDA3937_RS04195 at 929.704 kb on + strand, within DDA3937_RS04195 at 929.752 kb on + strand, within DDA3937_RS04195 at 929.753 kb on - strand, within DDA3937_RS04195 at 929.770 kb on + strand, within DDA3937_RS04195 at 929.770 kb on + strand, within DDA3937_RS04195 at 929.771 kb on - strand, within DDA3937_RS04195 at 929.771 kb on - strand, within DDA3937_RS04195 at 929.771 kb on - strand, within DDA3937_RS04195 at 929.774 kb on - strand, within DDA3937_RS04195 at 929.818 kb on + strand, within DDA3937_RS04195 at 929.856 kb on + strand, within DDA3937_RS04195 at 929.942 kb on - strand, within DDA3937_RS04195 at 929.954 kb on - strand, within DDA3937_RS04195 at 929.996 kb on + strand, within DDA3937_RS04195 at 929.996 kb on + strand, within DDA3937_RS04195 at 929.996 kb on + strand, within DDA3937_RS04195 at 929.997 kb on - strand, within DDA3937_RS04195 at 929.997 kb on - strand, within DDA3937_RS04195 at 930.009 kb on - strand, within DDA3937_RS04195 at 930.071 kb on + strand, within DDA3937_RS04195 at 930.071 kb on + strand, within DDA3937_RS04195 at 930.071 kb on + strand, within DDA3937_RS04195 at 930.211 kb on + strand, within DDA3937_RS04195 at 930.212 kb on - strand, within DDA3937_RS04195 at 930.300 kb on - strand at 930.300 kb on - strand at 930.303 kb on - strand at 930.333 kb on - strand at 930.368 kb on - strand at 930.378 kb on - strand at 930.413 kb on + strand at 930.422 kb on - strand at 930.453 kb on + strand at 930.453 kb on + strand at 930.478 kb on - strand at 930.502 kb on - strand at 930.668 kb on + strand, within DDA3937_RS04200 at 930.699 kb on + strand, within DDA3937_RS04200 at 930.699 kb on + strand, within DDA3937_RS04200 at 930.699 kb on + strand, within DDA3937_RS04200 at 930.699 kb on + strand, within DDA3937_RS04200 at 930.699 kb on + strand, within DDA3937_RS04200 at 930.700 kb on - strand, within DDA3937_RS04200 at 930.700 kb on - strand, within DDA3937_RS04200 at 930.700 kb on - strand, within DDA3937_RS04200 at 930.701 kb on + strand, within DDA3937_RS04200 at 930.701 kb on + strand, within DDA3937_RS04200 at 930.701 kb on + strand, within DDA3937_RS04200 at 930.701 kb on + strand, within DDA3937_RS04200 at 930.702 kb on - strand, within DDA3937_RS04200 at 930.702 kb on - strand, within DDA3937_RS04200 at 930.702 kb on - strand, within DDA3937_RS04200 at 930.702 kb on - strand, within DDA3937_RS04200 at 930.797 kb on - strand, within DDA3937_RS04200 at 930.831 kb on - strand, within DDA3937_RS04200 at 931.053 kb on + strand, within DDA3937_RS04200 at 931.256 kb on + strand, within DDA3937_RS04200 at 931.256 kb on + strand, within DDA3937_RS04200 at 931.257 kb on - strand, within DDA3937_RS04200 at 931.257 kb on - strand, within DDA3937_RS04200 at 931.257 kb on - strand, within DDA3937_RS04200 at 931.257 kb on - strand, within DDA3937_RS04200 at 931.257 kb on - strand, within DDA3937_RS04200 at 931.257 kb on - strand, within DDA3937_RS04200 at 931.257 kb on - strand, within DDA3937_RS04200 at 931.257 kb on - strand, within DDA3937_RS04200 at 931.257 kb on - strand, within DDA3937_RS04200 at 931.257 kb on - strand, within DDA3937_RS04200 at 931.257 kb on - strand, within DDA3937_RS04200 at 931.257 kb on - strand, within DDA3937_RS04200 at 931.260 kb on + strand, within DDA3937_RS04200 at 931.260 kb on + strand, within DDA3937_RS04200 at 931.260 kb on + strand, within DDA3937_RS04200 at 931.261 kb on - strand, within DDA3937_RS04200 at 931.261 kb on - strand, within DDA3937_RS04200 at 931.261 kb on - strand, within DDA3937_RS04200 at 931.261 kb on - strand, within DDA3937_RS04200 at 931.261 kb on - strand, within DDA3937_RS04200 at 931.261 kb on - strand, within DDA3937_RS04200 at 931.261 kb on - strand, within DDA3937_RS04200 at 931.329 kb on + strand, within DDA3937_RS04200 at 931.329 kb on + strand, within DDA3937_RS04200 at 931.330 kb on - strand at 931.347 kb on + strand at 931.359 kb on + strand at 931.371 kb on + strand at 931.372 kb on - strand at 931.372 kb on - strand at 931.372 kb on - strand at 931.372 kb on - strand at 931.421 kb on + strand at 931.475 kb on + strand at 931.504 kb on + strand at 931.505 kb on - strand at 931.613 kb on - strand, within DDA3937_RS04205 at 931.613 kb on - strand, within DDA3937_RS04205 at 931.658 kb on - strand, within DDA3937_RS04205 at 931.687 kb on - strand, within DDA3937_RS04205 at 931.767 kb on - strand, within DDA3937_RS04205 at 931.767 kb on - strand, within DDA3937_RS04205 at 931.907 kb on + strand, within DDA3937_RS04205 at 931.953 kb on - strand, within DDA3937_RS04205 at 931.979 kb on - strand, within DDA3937_RS04205 at 932.060 kb on - strand, within DDA3937_RS04205 at 932.060 kb on - strand, within DDA3937_RS04205 at 932.095 kb on + strand at 932.149 kb on - strand at 932.149 kb on - strand at 932.157 kb on - strand at 932.271 kb on + strand at 932.387 kb on - strand, within DDA3937_RS04210
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 929,580 - +1.1 929,626 - DDA3937_RS04195 0.12 -0.3 929,704 + DDA3937_RS04195 0.22 -0.2 929,752 + DDA3937_RS04195 0.27 +2.1 929,753 - DDA3937_RS04195 0.27 +1.1 929,770 + DDA3937_RS04195 0.30 -1.2 929,770 + DDA3937_RS04195 0.30 +0.8 929,771 - DDA3937_RS04195 0.30 -0.3 929,771 - DDA3937_RS04195 0.30 -0.9 929,771 - DDA3937_RS04195 0.30 -1.1 929,774 - DDA3937_RS04195 0.30 +0.0 929,818 + DDA3937_RS04195 0.35 -0.8 929,856 + DDA3937_RS04195 0.40 -1.8 929,942 - DDA3937_RS04195 0.50 -0.4 929,954 - DDA3937_RS04195 0.51 -1.4 929,996 + DDA3937_RS04195 0.57 +0.7 929,996 + DDA3937_RS04195 0.57 -0.8 929,996 + DDA3937_RS04195 0.57 -0.9 929,997 - DDA3937_RS04195 0.57 -0.5 929,997 - DDA3937_RS04195 0.57 -0.4 930,009 - DDA3937_RS04195 0.58 -1.3 930,071 + DDA3937_RS04195 0.65 +0.6 930,071 + DDA3937_RS04195 0.65 +0.1 930,071 + DDA3937_RS04195 0.65 -0.2 930,211 + DDA3937_RS04195 0.82 -1.1 930,212 - DDA3937_RS04195 0.82 +0.9 930,300 - -0.2 930,300 - -0.3 930,303 - +0.5 930,333 - +0.9 930,368 - +1.3 930,378 - +0.6 930,413 + -0.4 930,422 - +0.5 930,453 + +0.3 930,453 + +1.1 930,478 - +0.5 930,502 - +0.1 930,668 + DDA3937_RS04200 0.25 +1.1 930,699 + DDA3937_RS04200 0.28 -1.7 930,699 + DDA3937_RS04200 0.28 -1.1 930,699 + DDA3937_RS04200 0.28 -0.8 930,699 + DDA3937_RS04200 0.28 -1.3 930,699 + DDA3937_RS04200 0.28 -0.5 930,700 - DDA3937_RS04200 0.28 -2.4 930,700 - DDA3937_RS04200 0.28 -1.5 930,700 - DDA3937_RS04200 0.28 -2.0 930,701 + DDA3937_RS04200 0.28 +0.1 930,701 + DDA3937_RS04200 0.28 -0.4 930,701 + DDA3937_RS04200 0.28 -0.1 930,701 + DDA3937_RS04200 0.28 -0.5 930,702 - DDA3937_RS04200 0.28 -0.9 930,702 - DDA3937_RS04200 0.28 -0.5 930,702 - DDA3937_RS04200 0.28 +0.1 930,702 - DDA3937_RS04200 0.28 -2.6 930,797 - DDA3937_RS04200 0.37 -1.3 930,831 - DDA3937_RS04200 0.40 -0.9 931,053 + DDA3937_RS04200 0.62 -0.0 931,256 + DDA3937_RS04200 0.82 -1.2 931,256 + DDA3937_RS04200 0.82 -0.2 931,257 - DDA3937_RS04200 0.82 -1.1 931,257 - DDA3937_RS04200 0.82 -1.1 931,257 - DDA3937_RS04200 0.82 -0.3 931,257 - DDA3937_RS04200 0.82 -0.4 931,257 - DDA3937_RS04200 0.82 -1.3 931,257 - DDA3937_RS04200 0.82 -1.7 931,257 - DDA3937_RS04200 0.82 +0.0 931,257 - DDA3937_RS04200 0.82 -0.2 931,257 - DDA3937_RS04200 0.82 -0.1 931,257 - DDA3937_RS04200 0.82 -0.2 931,257 - DDA3937_RS04200 0.82 -0.5 931,257 - DDA3937_RS04200 0.82 -2.2 931,260 + DDA3937_RS04200 0.82 -0.9 931,260 + DDA3937_RS04200 0.82 +0.3 931,260 + DDA3937_RS04200 0.82 -1.1 931,261 - DDA3937_RS04200 0.82 -0.5 931,261 - DDA3937_RS04200 0.82 +0.2 931,261 - DDA3937_RS04200 0.82 +2.6 931,261 - DDA3937_RS04200 0.82 +0.2 931,261 - DDA3937_RS04200 0.82 -0.4 931,261 - DDA3937_RS04200 0.82 -0.6 931,261 - DDA3937_RS04200 0.82 +0.1 931,329 + DDA3937_RS04200 0.89 -1.5 931,329 + DDA3937_RS04200 0.89 -2.1 931,330 - +0.1 931,347 + -1.6 931,359 + +2.4 931,371 + -0.5 931,372 - +0.3 931,372 - +0.3 931,372 - -0.4 931,372 - -0.2 931,421 + -0.7 931,475 + -0.7 931,504 + -0.4 931,505 - -1.0 931,613 - DDA3937_RS04205 0.23 -2.3 931,613 - DDA3937_RS04205 0.23 +0.5 931,658 - DDA3937_RS04205 0.30 +0.1 931,687 - DDA3937_RS04205 0.34 -0.7 931,767 - DDA3937_RS04205 0.45 -0.4 931,767 - DDA3937_RS04205 0.45 +0.5 931,907 + DDA3937_RS04205 0.65 -2.9 931,953 - DDA3937_RS04205 0.72 +0.4 931,979 - DDA3937_RS04205 0.75 +1.1 932,060 - DDA3937_RS04205 0.87 -0.3 932,060 - DDA3937_RS04205 0.87 -1.5 932,095 + +0.3 932,149 - +0.1 932,149 - -0.2 932,157 - -0.5 932,271 + +0.2 932,387 - DDA3937_RS04210 0.31 -0.4
Or see this region's nucleotide sequence