Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS04140 and DDA3937_RS04145 are separated by 32 nucleotides DDA3937_RS04145 and DDA3937_RS23480 are separated by 96 nucleotides DDA3937_RS23480 and DDA3937_RS04150 are separated by 12 nucleotides DDA3937_RS04150 and DDA3937_RS04155 are separated by 70 nucleotides DDA3937_RS04155 and DDA3937_RS04160 overlap by 1 nucleotides DDA3937_RS04160 and DDA3937_RS04165 overlap by 4 nucleotides
DDA3937_RS04140: DDA3937_RS04140 - hypothetical protein, at 920,173 to 920,394
_RS04140
DDA3937_RS04145: DDA3937_RS04145 - phage regulatory CII family protein, at 920,427 to 920,936
_RS04145
DDA3937_RS23480: DDA3937_RS23480 - hypothetical protein, at 921,033 to 921,188
_RS23480
DDA3937_RS04150: DDA3937_RS04150 - hypothetical protein, at 921,201 to 921,530
_RS04150
DDA3937_RS04155: DDA3937_RS04155 - DUF2732 domain-containing protein, at 921,601 to 921,828
_RS04155
DDA3937_RS04160: DDA3937_RS04160 - DUF5405 family protein, at 921,828 to 922,151
_RS04160
DDA3937_RS04165: DDA3937_RS04165 - replication endonuclease, at 922,148 to 924,190
_RS04165
Position (kb) 921
922 Strain fitness (log2 ratio) -2
-1
0
1
2 at 920.227 kb on + strand, within DDA3937_RS04140 at 920.289 kb on - strand, within DDA3937_RS04140 at 920.289 kb on - strand, within DDA3937_RS04140 at 920.437 kb on - strand at 920.710 kb on - strand, within DDA3937_RS04145 at 920.710 kb on - strand, within DDA3937_RS04145 at 920.744 kb on - strand, within DDA3937_RS04145 at 920.772 kb on - strand, within DDA3937_RS04145 at 920.798 kb on - strand, within DDA3937_RS04145 at 920.798 kb on - strand, within DDA3937_RS04145 at 920.798 kb on - strand, within DDA3937_RS04145 at 920.802 kb on - strand, within DDA3937_RS04145 at 920.802 kb on - strand, within DDA3937_RS04145 at 920.802 kb on - strand, within DDA3937_RS04145 at 920.862 kb on - strand, within DDA3937_RS04145 at 920.938 kb on - strand at 920.938 kb on - strand at 920.989 kb on - strand at 920.989 kb on - strand at 920.989 kb on - strand at 921.003 kb on - strand at 921.003 kb on - strand at 921.017 kb on - strand at 921.135 kb on - strand, within DDA3937_RS23480 at 921.200 kb on + strand at 921.200 kb on + strand at 921.200 kb on + strand at 921.200 kb on + strand at 921.200 kb on + strand at 921.200 kb on + strand at 921.201 kb on - strand at 921.201 kb on - strand at 921.201 kb on - strand at 921.201 kb on - strand at 921.257 kb on + strand, within DDA3937_RS04150 at 921.258 kb on - strand, within DDA3937_RS04150 at 921.316 kb on + strand, within DDA3937_RS04150 at 921.316 kb on + strand, within DDA3937_RS04150 at 921.357 kb on - strand, within DDA3937_RS04150 at 921.357 kb on - strand, within DDA3937_RS04150 at 921.359 kb on + strand at 921.359 kb on + strand, within DDA3937_RS04150 at 921.359 kb on + strand, within DDA3937_RS04150 at 921.359 kb on + strand, within DDA3937_RS04150 at 921.359 kb on + strand, within DDA3937_RS04150 at 921.359 kb on + strand, within DDA3937_RS04150 at 921.360 kb on - strand, within DDA3937_RS04150 at 921.360 kb on - strand, within DDA3937_RS04150 at 921.360 kb on - strand, within DDA3937_RS04150 at 921.360 kb on - strand, within DDA3937_RS04150 at 921.360 kb on - strand, within DDA3937_RS04150 at 921.360 kb on - strand, within DDA3937_RS04150 at 921.360 kb on - strand, within DDA3937_RS04150 at 921.363 kb on + strand, within DDA3937_RS04150 at 921.363 kb on + strand at 921.380 kb on + strand, within DDA3937_RS04150 at 921.417 kb on - strand, within DDA3937_RS04150 at 921.452 kb on - strand, within DDA3937_RS04150 at 921.452 kb on - strand, within DDA3937_RS04150 at 921.529 kb on - strand at 921.529 kb on - strand at 921.540 kb on - strand at 921.550 kb on - strand at 921.550 kb on - strand at 921.550 kb on - strand at 921.699 kb on - strand, within DDA3937_RS04155 at 921.699 kb on - strand, within DDA3937_RS04155 at 921.699 kb on - strand, within DDA3937_RS04155 at 921.699 kb on - strand, within DDA3937_RS04155 at 921.699 kb on - strand, within DDA3937_RS04155 at 921.699 kb on - strand, within DDA3937_RS04155 at 921.699 kb on - strand, within DDA3937_RS04155 at 921.709 kb on - strand, within DDA3937_RS04155 at 921.709 kb on - strand, within DDA3937_RS04155 at 921.709 kb on - strand, within DDA3937_RS04155 at 921.768 kb on - strand, within DDA3937_RS04155 at 921.822 kb on + strand at 921.822 kb on + strand at 921.823 kb on - strand at 921.823 kb on - strand at 921.823 kb on - strand at 921.823 kb on - strand at 921.823 kb on - strand at 921.827 kb on - strand at 921.834 kb on - strand at 921.834 kb on - strand at 921.852 kb on + strand at 921.852 kb on + strand at 921.852 kb on + strand at 921.852 kb on + strand at 921.852 kb on + strand at 921.852 kb on + strand at 921.852 kb on + strand at 921.852 kb on + strand at 921.853 kb on - strand at 921.853 kb on - strand at 921.853 kb on - strand at 921.853 kb on - strand at 921.855 kb on - strand at 921.855 kb on - strand at 921.855 kb on - strand at 921.855 kb on - strand at 921.954 kb on + strand, within DDA3937_RS04160 at 921.954 kb on + strand, within DDA3937_RS04160 at 921.954 kb on + strand, within DDA3937_RS04160 at 921.954 kb on + strand, within DDA3937_RS04160 at 921.955 kb on - strand, within DDA3937_RS04160 at 921.955 kb on - strand, within DDA3937_RS04160 at 921.956 kb on + strand, within DDA3937_RS04160 at 921.975 kb on + strand, within DDA3937_RS04160 at 921.990 kb on - strand, within DDA3937_RS04160 at 922.120 kb on + strand at 922.142 kb on - strand at 922.230 kb on + strand at 922.231 kb on - strand at 922.235 kb on + strand at 922.235 kb on + strand at 922.235 kb on + strand at 922.235 kb on + strand at 922.236 kb on - strand at 922.236 kb on - strand at 922.236 kb on - strand at 922.236 kb on - strand at 922.236 kb on - strand at 922.236 kb on - strand at 922.236 kb on - strand at 922.292 kb on + strand at 922.292 kb on + strand at 922.292 kb on + strand at 922.293 kb on - strand at 922.355 kb on - strand, within DDA3937_RS04165 at 922.390 kb on + strand, within DDA3937_RS04165 at 922.390 kb on + strand, within DDA3937_RS04165 at 922.391 kb on - strand, within DDA3937_RS04165 at 922.422 kb on + strand, within DDA3937_RS04165 at 922.422 kb on + strand, within DDA3937_RS04165 at 922.423 kb on - strand, within DDA3937_RS04165 at 922.527 kb on - strand, within DDA3937_RS04165
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 920,227 + DDA3937_RS04140 0.24 -1.9 920,289 - DDA3937_RS04140 0.52 +0.6 920,289 - DDA3937_RS04140 0.52 +0.1 920,437 - +1.1 920,710 - DDA3937_RS04145 0.55 +0.1 920,710 - DDA3937_RS04145 0.55 +0.1 920,744 - DDA3937_RS04145 0.62 -1.4 920,772 - DDA3937_RS04145 0.68 -0.1 920,798 - DDA3937_RS04145 0.73 -1.3 920,798 - DDA3937_RS04145 0.73 -0.1 920,798 - DDA3937_RS04145 0.73 +0.6 920,802 - DDA3937_RS04145 0.74 +0.6 920,802 - DDA3937_RS04145 0.74 -0.2 920,802 - DDA3937_RS04145 0.74 +0.1 920,862 - DDA3937_RS04145 0.85 -0.4 920,938 - -0.9 920,938 - -0.5 920,989 - -1.1 920,989 - -0.4 920,989 - +0.3 921,003 - +0.3 921,003 - -0.7 921,017 - +0.5 921,135 - DDA3937_RS23480 0.65 -0.8 921,200 + -2.7 921,200 + -1.6 921,200 + +1.5 921,200 + -1.5 921,200 + -0.0 921,200 + -0.5 921,201 - -0.6 921,201 - -0.4 921,201 - -0.2 921,201 - -1.2 921,257 + DDA3937_RS04150 0.17 +0.8 921,258 - DDA3937_RS04150 0.17 -1.2 921,316 + DDA3937_RS04150 0.35 -0.6 921,316 + DDA3937_RS04150 0.35 -0.9 921,357 - DDA3937_RS04150 0.47 +1.1 921,357 - DDA3937_RS04150 0.47 -0.1 921,359 + +0.1 921,359 + DDA3937_RS04150 0.48 -0.3 921,359 + DDA3937_RS04150 0.48 -1.3 921,359 + DDA3937_RS04150 0.48 -0.3 921,359 + DDA3937_RS04150 0.48 -1.8 921,359 + DDA3937_RS04150 0.48 -0.7 921,360 - DDA3937_RS04150 0.48 -1.4 921,360 - DDA3937_RS04150 0.48 -0.3 921,360 - DDA3937_RS04150 0.48 -0.5 921,360 - DDA3937_RS04150 0.48 -0.7 921,360 - DDA3937_RS04150 0.48 -0.2 921,360 - DDA3937_RS04150 0.48 -0.8 921,360 - DDA3937_RS04150 0.48 -0.7 921,363 + DDA3937_RS04150 0.49 -1.7 921,363 + +1.1 921,380 + DDA3937_RS04150 0.54 -0.7 921,417 - DDA3937_RS04150 0.65 -0.8 921,452 - DDA3937_RS04150 0.76 -1.7 921,452 - DDA3937_RS04150 0.76 +0.1 921,529 - -0.2 921,529 - -0.6 921,540 - -0.1 921,550 - +1.6 921,550 - +0.1 921,550 - -0.5 921,699 - DDA3937_RS04155 0.43 +0.1 921,699 - DDA3937_RS04155 0.43 -0.4 921,699 - DDA3937_RS04155 0.43 -0.7 921,699 - DDA3937_RS04155 0.43 +0.6 921,699 - DDA3937_RS04155 0.43 -0.0 921,699 - DDA3937_RS04155 0.43 -0.0 921,699 - DDA3937_RS04155 0.43 +0.1 921,709 - DDA3937_RS04155 0.47 -0.1 921,709 - DDA3937_RS04155 0.47 -0.3 921,709 - DDA3937_RS04155 0.47 -0.5 921,768 - DDA3937_RS04155 0.73 -1.4 921,822 + -0.9 921,822 + -1.1 921,823 - -0.5 921,823 - -0.8 921,823 - -0.2 921,823 - -1.1 921,823 - +0.8 921,827 - +0.4 921,834 - +0.1 921,834 - -1.0 921,852 + +0.5 921,852 + -0.5 921,852 + -0.9 921,852 + -1.6 921,852 + -0.5 921,852 + +0.6 921,852 + -1.3 921,852 + +2.4 921,853 - -0.5 921,853 - -0.4 921,853 - -0.6 921,853 - -1.7 921,855 - -0.3 921,855 - -0.9 921,855 - -0.9 921,855 - -0.9 921,954 + DDA3937_RS04160 0.39 -0.7 921,954 + DDA3937_RS04160 0.39 -0.7 921,954 + DDA3937_RS04160 0.39 +0.1 921,954 + DDA3937_RS04160 0.39 +0.1 921,955 - DDA3937_RS04160 0.39 +0.0 921,955 - DDA3937_RS04160 0.39 -0.5 921,956 + DDA3937_RS04160 0.40 -1.5 921,975 + DDA3937_RS04160 0.45 -0.4 921,990 - DDA3937_RS04160 0.50 +0.4 922,120 + +0.4 922,142 - -1.3 922,230 + -0.1 922,231 - +0.7 922,235 + +1.1 922,235 + +0.2 922,235 + -0.5 922,235 + -0.3 922,236 - -2.6 922,236 - +0.2 922,236 - +0.3 922,236 - -0.7 922,236 - +1.1 922,236 - -0.3 922,236 - -1.5 922,292 + +0.2 922,292 + +0.2 922,292 + +0.8 922,293 - -0.5 922,355 - DDA3937_RS04165 0.10 +1.1 922,390 + DDA3937_RS04165 0.12 -0.4 922,390 + DDA3937_RS04165 0.12 -0.9 922,391 - DDA3937_RS04165 0.12 -1.1 922,422 + DDA3937_RS04165 0.13 -0.9 922,422 + DDA3937_RS04165 0.13 +0.5 922,423 - DDA3937_RS04165 0.13 +0.1 922,527 - DDA3937_RS04165 0.19 +0.3
Or see this region's nucleotide sequence