Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS04135 and DDA3937_RS23030 are separated by 123 nucleotides DDA3937_RS23030 and DDA3937_RS04140 are separated by 118 nucleotides DDA3937_RS04140 and DDA3937_RS04145 are separated by 32 nucleotides DDA3937_RS04145 and DDA3937_RS23480 are separated by 96 nucleotides DDA3937_RS23480 and DDA3937_RS04150 are separated by 12 nucleotides
DDA3937_RS04135: DDA3937_RS04135 - helix-turn-helix domain-containing protein, at 918,861 to 919,712
_RS04135
DDA3937_RS23030: DDA3937_RS23030 - helix-turn-helix domain containing protein, at 919,836 to 920,054
_RS23030
DDA3937_RS04140: DDA3937_RS04140 - hypothetical protein, at 920,173 to 920,394
_RS04140
DDA3937_RS04145: DDA3937_RS04145 - phage regulatory CII family protein, at 920,427 to 920,936
_RS04145
DDA3937_RS23480: DDA3937_RS23480 - hypothetical protein, at 921,033 to 921,188
_RS23480
DDA3937_RS04150: DDA3937_RS04150 - hypothetical protein, at 921,201 to 921,530
_RS04150
Position (kb) 920
921 Strain fitness (log2 ratio) -2
-1
0
1 at 920.069 kb on - strand at 920.131 kb on - strand at 920.134 kb on - strand at 920.157 kb on + strand at 920.173 kb on - strand at 920.186 kb on + strand at 920.227 kb on + strand, within DDA3937_RS04140 at 920.289 kb on - strand, within DDA3937_RS04140 at 920.289 kb on - strand, within DDA3937_RS04140 at 920.437 kb on - strand at 920.710 kb on - strand, within DDA3937_RS04145 at 920.710 kb on - strand, within DDA3937_RS04145 at 920.744 kb on - strand, within DDA3937_RS04145 at 920.772 kb on - strand, within DDA3937_RS04145 at 920.798 kb on - strand, within DDA3937_RS04145 at 920.798 kb on - strand, within DDA3937_RS04145 at 920.798 kb on - strand, within DDA3937_RS04145 at 920.802 kb on - strand, within DDA3937_RS04145 at 920.802 kb on - strand, within DDA3937_RS04145 at 920.802 kb on - strand, within DDA3937_RS04145 at 920.862 kb on - strand, within DDA3937_RS04145 at 920.938 kb on - strand at 920.938 kb on - strand at 920.989 kb on - strand at 920.989 kb on - strand at 920.989 kb on - strand at 921.003 kb on - strand at 921.003 kb on - strand at 921.017 kb on - strand at 921.135 kb on - strand, within DDA3937_RS23480 at 921.200 kb on + strand at 921.200 kb on + strand at 921.200 kb on + strand at 921.200 kb on + strand at 921.200 kb on + strand at 921.200 kb on + strand at 921.201 kb on - strand at 921.201 kb on - strand at 921.201 kb on - strand at 921.201 kb on - strand at 921.257 kb on + strand, within DDA3937_RS04150 at 921.258 kb on - strand, within DDA3937_RS04150 at 921.316 kb on + strand, within DDA3937_RS04150 at 921.316 kb on + strand, within DDA3937_RS04150 at 921.357 kb on - strand, within DDA3937_RS04150 at 921.357 kb on - strand, within DDA3937_RS04150 at 921.359 kb on + strand at 921.359 kb on + strand, within DDA3937_RS04150 at 921.359 kb on + strand, within DDA3937_RS04150 at 921.359 kb on + strand, within DDA3937_RS04150 at 921.359 kb on + strand, within DDA3937_RS04150 at 921.359 kb on + strand, within DDA3937_RS04150 at 921.360 kb on - strand, within DDA3937_RS04150 at 921.360 kb on - strand, within DDA3937_RS04150 at 921.360 kb on - strand, within DDA3937_RS04150 at 921.360 kb on - strand, within DDA3937_RS04150 at 921.360 kb on - strand, within DDA3937_RS04150 at 921.360 kb on - strand, within DDA3937_RS04150 at 921.360 kb on - strand, within DDA3937_RS04150 at 921.363 kb on + strand, within DDA3937_RS04150 at 921.363 kb on + strand at 921.380 kb on + strand, within DDA3937_RS04150
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 920,069 - -0.3 920,131 - -0.2 920,134 - -0.4 920,157 + -0.4 920,173 - -0.9 920,186 + -0.9 920,227 + DDA3937_RS04140 0.24 -1.9 920,289 - DDA3937_RS04140 0.52 +0.6 920,289 - DDA3937_RS04140 0.52 +0.1 920,437 - +1.1 920,710 - DDA3937_RS04145 0.55 +0.1 920,710 - DDA3937_RS04145 0.55 +0.1 920,744 - DDA3937_RS04145 0.62 -1.4 920,772 - DDA3937_RS04145 0.68 -0.1 920,798 - DDA3937_RS04145 0.73 -1.3 920,798 - DDA3937_RS04145 0.73 -0.1 920,798 - DDA3937_RS04145 0.73 +0.6 920,802 - DDA3937_RS04145 0.74 +0.6 920,802 - DDA3937_RS04145 0.74 -0.2 920,802 - DDA3937_RS04145 0.74 +0.1 920,862 - DDA3937_RS04145 0.85 -0.4 920,938 - -0.9 920,938 - -0.5 920,989 - -1.1 920,989 - -0.4 920,989 - +0.3 921,003 - +0.3 921,003 - -0.7 921,017 - +0.5 921,135 - DDA3937_RS23480 0.65 -0.8 921,200 + -2.7 921,200 + -1.6 921,200 + +1.5 921,200 + -1.5 921,200 + -0.0 921,200 + -0.5 921,201 - -0.6 921,201 - -0.4 921,201 - -0.2 921,201 - -1.2 921,257 + DDA3937_RS04150 0.17 +0.8 921,258 - DDA3937_RS04150 0.17 -1.2 921,316 + DDA3937_RS04150 0.35 -0.6 921,316 + DDA3937_RS04150 0.35 -0.9 921,357 - DDA3937_RS04150 0.47 +1.1 921,357 - DDA3937_RS04150 0.47 -0.1 921,359 + +0.1 921,359 + DDA3937_RS04150 0.48 -0.3 921,359 + DDA3937_RS04150 0.48 -1.3 921,359 + DDA3937_RS04150 0.48 -0.3 921,359 + DDA3937_RS04150 0.48 -1.8 921,359 + DDA3937_RS04150 0.48 -0.7 921,360 - DDA3937_RS04150 0.48 -1.4 921,360 - DDA3937_RS04150 0.48 -0.3 921,360 - DDA3937_RS04150 0.48 -0.5 921,360 - DDA3937_RS04150 0.48 -0.7 921,360 - DDA3937_RS04150 0.48 -0.2 921,360 - DDA3937_RS04150 0.48 -0.8 921,360 - DDA3937_RS04150 0.48 -0.7 921,363 + DDA3937_RS04150 0.49 -1.7 921,363 + +1.1 921,380 + DDA3937_RS04150 0.54 -0.7
Or see this region's nucleotide sequence