Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS04100

Experiment: LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDDA3937_RS04095 and DDA3937_RS04100 are separated by 11 nucleotidesDDA3937_RS04100 and DDA3937_RS04105 are separated by 13 nucleotides DDA3937_RS04095: DDA3937_RS04095 - PAAR domain-containing protein, at 907,392 to 911,696 _RS04095 DDA3937_RS04100: DDA3937_RS04100 - DUF1795 domain-containing protein, at 911,708 to 912,115 _RS04100 DDA3937_RS04105: DDA3937_RS04105 - type VI secretion system tip protein VgrG, at 912,129 to 913,982 _RS04105 Position (kb) 911 912 913Strain fitness (log2 ratio) -1 0 1 2at 910.846 kb on + strand, within DDA3937_RS04095at 910.846 kb on + strand, within DDA3937_RS04095at 910.846 kb on + strand, within DDA3937_RS04095at 910.846 kb on + strand, within DDA3937_RS04095at 910.847 kb on - strand, within DDA3937_RS04095at 910.872 kb on + strand, within DDA3937_RS04095at 910.872 kb on + strand, within DDA3937_RS04095at 910.872 kb on + strand, within DDA3937_RS04095at 910.872 kb on + strand, within DDA3937_RS04095at 910.872 kb on + strand, within DDA3937_RS04095at 910.873 kb on - strand, within DDA3937_RS04095at 910.986 kb on + strand, within DDA3937_RS04095at 910.986 kb on + strand, within DDA3937_RS04095at 910.986 kb on + strand, within DDA3937_RS04095at 910.986 kb on + strand, within DDA3937_RS04095at 910.987 kb on - strand, within DDA3937_RS04095at 910.989 kb on + strand, within DDA3937_RS04095at 911.119 kb on + strand, within DDA3937_RS04095at 911.119 kb on + strand, within DDA3937_RS04095at 911.119 kb on + strand, within DDA3937_RS04095at 911.119 kb on + strand, within DDA3937_RS04095at 911.119 kb on + strand, within DDA3937_RS04095at 911.119 kb on + strand, within DDA3937_RS04095at 911.120 kb on - strand, within DDA3937_RS04095at 911.120 kb on - strand, within DDA3937_RS04095at 911.120 kb on - strand, within DDA3937_RS04095at 911.120 kb on - strand, within DDA3937_RS04095at 911.120 kb on - strand, within DDA3937_RS04095at 911.146 kb on - strand, within DDA3937_RS04095at 911.792 kb on - strand, within DDA3937_RS04100at 911.866 kb on + strand, within DDA3937_RS04100at 911.868 kb on + strand, within DDA3937_RS04100at 911.869 kb on - strand, within DDA3937_RS04100at 911.928 kb on + strand, within DDA3937_RS04100at 911.970 kb on + strand, within DDA3937_RS04100at 911.971 kb on - strand, within DDA3937_RS04100at 912.111 kb on + strandat 912.111 kb on + strandat 912.111 kb on + strandat 912.111 kb on + strandat 912.111 kb on + strandat 912.473 kb on + strand, within DDA3937_RS04105at 912.474 kb on - strand, within DDA3937_RS04105at 912.839 kb on - strand, within DDA3937_RS04105at 912.839 kb on - strand, within DDA3937_RS04105at 912.901 kb on + strand, within DDA3937_RS04105at 913.076 kb on + strand, within DDA3937_RS04105

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB
remove
910,846 + DDA3937_RS04095 0.80 +0.4
910,846 + DDA3937_RS04095 0.80 -0.7
910,846 + DDA3937_RS04095 0.80 -0.9
910,846 + DDA3937_RS04095 0.80 -0.2
910,847 - DDA3937_RS04095 0.80 +0.3
910,872 + DDA3937_RS04095 0.81 -0.3
910,872 + DDA3937_RS04095 0.81 +1.3
910,872 + DDA3937_RS04095 0.81 +0.1
910,872 + DDA3937_RS04095 0.81 -0.7
910,872 + DDA3937_RS04095 0.81 -0.5
910,873 - DDA3937_RS04095 0.81 +0.7
910,986 + DDA3937_RS04095 0.83 -0.9
910,986 + DDA3937_RS04095 0.83 +0.6
910,986 + DDA3937_RS04095 0.83 -1.6
910,986 + DDA3937_RS04095 0.83 +0.4
910,987 - DDA3937_RS04095 0.84 -0.0
910,989 + DDA3937_RS04095 0.84 +1.9
911,119 + DDA3937_RS04095 0.87 -0.5
911,119 + DDA3937_RS04095 0.87 +0.0
911,119 + DDA3937_RS04095 0.87 +0.1
911,119 + DDA3937_RS04095 0.87 -0.8
911,119 + DDA3937_RS04095 0.87 +0.1
911,119 + DDA3937_RS04095 0.87 +0.7
911,120 - DDA3937_RS04095 0.87 +0.1
911,120 - DDA3937_RS04095 0.87 -0.6
911,120 - DDA3937_RS04095 0.87 -0.3
911,120 - DDA3937_RS04095 0.87 +0.1
911,120 - DDA3937_RS04095 0.87 -0.1
911,146 - DDA3937_RS04095 0.87 -0.8
911,792 - DDA3937_RS04100 0.21 -0.4
911,866 + DDA3937_RS04100 0.39 -0.1
911,868 + DDA3937_RS04100 0.39 -0.3
911,869 - DDA3937_RS04100 0.39 -0.5
911,928 + DDA3937_RS04100 0.54 -0.8
911,970 + DDA3937_RS04100 0.64 -0.7
911,971 - DDA3937_RS04100 0.64 -0.4
912,111 + +0.1
912,111 + -0.9
912,111 + -0.0
912,111 + -1.7
912,111 + +0.2
912,473 + DDA3937_RS04105 0.19 +0.5
912,474 - DDA3937_RS04105 0.19 +1.9
912,839 - DDA3937_RS04105 0.38 -1.4
912,839 - DDA3937_RS04105 0.38 +0.2
912,901 + DDA3937_RS04105 0.42 +0.6
913,076 + DDA3937_RS04105 0.51 +0.3

Or see this region's nucleotide sequence