Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS03995 and DDA3937_RS04000 are separated by 50 nucleotides DDA3937_RS04000 and DDA3937_RS04005 overlap by 4 nucleotides DDA3937_RS04005 and DDA3937_RS04010 are separated by 10 nucleotides
DDA3937_RS03995: DDA3937_RS03995 - P-type conjugative transfer ATPase TrbB, at 892,577 to 893,530
_RS03995
DDA3937_RS04000: DDA3937_RS04000 - TrbC/VirB2 family protein, at 893,581 to 893,874
_RS04000
DDA3937_RS04005: DDA3937_RS04005 - VirB3 family type IV secretion system protein, at 893,871 to 894,143
_RS04005
DDA3937_RS04010: DDA3937_RS04010 - conjugal transfer protein TrbE, at 894,154 to 896,604
_RS04010
Position (kb) 893
894
895 Strain fitness (log2 ratio) -2
-1
0
1
2 at 892.876 kb on + strand, within DDA3937_RS03995 at 892.876 kb on + strand, within DDA3937_RS03995 at 892.910 kb on + strand, within DDA3937_RS03995 at 892.910 kb on + strand, within DDA3937_RS03995 at 892.910 kb on + strand, within DDA3937_RS03995 at 893.150 kb on - strand, within DDA3937_RS03995 at 893.150 kb on - strand, within DDA3937_RS03995 at 893.388 kb on + strand, within DDA3937_RS03995 at 893.388 kb on + strand, within DDA3937_RS03995 at 893.389 kb on - strand, within DDA3937_RS03995 at 893.389 kb on - strand, within DDA3937_RS03995 at 893.389 kb on - strand, within DDA3937_RS03995 at 893.389 kb on - strand, within DDA3937_RS03995 at 893.462 kb on + strand at 893.511 kb on + strand at 893.577 kb on + strand at 893.577 kb on + strand at 893.578 kb on - strand at 893.578 kb on - strand at 893.578 kb on - strand at 893.578 kb on - strand at 893.578 kb on - strand at 893.629 kb on + strand, within DDA3937_RS04000 at 893.629 kb on + strand, within DDA3937_RS04000 at 893.630 kb on - strand, within DDA3937_RS04000 at 893.646 kb on + strand, within DDA3937_RS04000 at 893.646 kb on + strand, within DDA3937_RS04000 at 893.646 kb on + strand, within DDA3937_RS04000 at 893.646 kb on + strand, within DDA3937_RS04000 at 893.646 kb on + strand, within DDA3937_RS04000 at 893.646 kb on + strand, within DDA3937_RS04000 at 893.647 kb on - strand, within DDA3937_RS04000 at 893.647 kb on - strand, within DDA3937_RS04000 at 893.647 kb on - strand, within DDA3937_RS04000 at 893.647 kb on - strand, within DDA3937_RS04000 at 893.647 kb on - strand, within DDA3937_RS04000 at 893.687 kb on + strand, within DDA3937_RS04000 at 893.687 kb on + strand, within DDA3937_RS04000 at 893.687 kb on + strand, within DDA3937_RS04000 at 893.687 kb on + strand, within DDA3937_RS04000 at 893.687 kb on + strand, within DDA3937_RS04000 at 893.687 kb on + strand, within DDA3937_RS04000 at 893.688 kb on - strand, within DDA3937_RS04000 at 893.688 kb on - strand, within DDA3937_RS04000 at 893.688 kb on - strand, within DDA3937_RS04000 at 893.870 kb on + strand at 893.870 kb on + strand at 893.870 kb on + strand at 893.870 kb on + strand at 893.871 kb on - strand at 893.871 kb on - strand at 893.871 kb on - strand at 893.871 kb on - strand at 893.883 kb on + strand at 893.908 kb on + strand, within DDA3937_RS04005 at 893.960 kb on + strand, within DDA3937_RS04005 at 894.053 kb on + strand, within DDA3937_RS04005 at 894.113 kb on + strand, within DDA3937_RS04005 at 894.113 kb on + strand, within DDA3937_RS04005 at 894.114 kb on - strand, within DDA3937_RS04005 at 894.114 kb on - strand, within DDA3937_RS04005 at 894.114 kb on - strand, within DDA3937_RS04005 at 894.115 kb on + strand, within DDA3937_RS04005 at 894.115 kb on + strand, within DDA3937_RS04005 at 894.115 kb on + strand, within DDA3937_RS04005 at 894.115 kb on + strand, within DDA3937_RS04005 at 894.115 kb on + strand, within DDA3937_RS04005 at 894.115 kb on + strand, within DDA3937_RS04005 at 894.115 kb on + strand, within DDA3937_RS04005 at 894.115 kb on + strand, within DDA3937_RS04005 at 894.115 kb on + strand, within DDA3937_RS04005 at 894.115 kb on + strand, within DDA3937_RS04005 at 894.116 kb on - strand at 894.116 kb on - strand at 894.116 kb on - strand at 894.116 kb on - strand at 894.116 kb on - strand at 894.116 kb on - strand at 894.116 kb on - strand at 894.150 kb on + strand at 894.151 kb on - strand at 894.151 kb on - strand at 894.172 kb on + strand at 894.191 kb on + strand at 894.342 kb on + strand at 894.508 kb on + strand, within DDA3937_RS04010 at 894.508 kb on + strand, within DDA3937_RS04010 at 894.508 kb on + strand, within DDA3937_RS04010 at 894.509 kb on - strand, within DDA3937_RS04010 at 894.509 kb on - strand, within DDA3937_RS04010 at 894.509 kb on - strand, within DDA3937_RS04010 at 894.526 kb on + strand, within DDA3937_RS04010 at 894.526 kb on + strand, within DDA3937_RS04010 at 894.526 kb on + strand, within DDA3937_RS04010 at 894.526 kb on + strand, within DDA3937_RS04010 at 894.526 kb on + strand, within DDA3937_RS04010 at 894.527 kb on - strand, within DDA3937_RS04010 at 894.527 kb on - strand, within DDA3937_RS04010 at 894.569 kb on + strand, within DDA3937_RS04010 at 894.571 kb on + strand, within DDA3937_RS04010 at 894.572 kb on - strand, within DDA3937_RS04010 at 894.572 kb on - strand, within DDA3937_RS04010 at 894.709 kb on + strand, within DDA3937_RS04010 at 894.710 kb on - strand, within DDA3937_RS04010 at 894.710 kb on - strand, within DDA3937_RS04010 at 894.710 kb on - strand, within DDA3937_RS04010
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 892,876 + DDA3937_RS03995 0.31 -1.4 892,876 + DDA3937_RS03995 0.31 -0.0 892,910 + DDA3937_RS03995 0.35 +2.5 892,910 + DDA3937_RS03995 0.35 -0.3 892,910 + DDA3937_RS03995 0.35 +0.3 893,150 - DDA3937_RS03995 0.60 -0.3 893,150 - DDA3937_RS03995 0.60 +1.4 893,388 + DDA3937_RS03995 0.85 +1.3 893,388 + DDA3937_RS03995 0.85 -1.4 893,389 - DDA3937_RS03995 0.85 +0.3 893,389 - DDA3937_RS03995 0.85 +0.5 893,389 - DDA3937_RS03995 0.85 -0.0 893,389 - DDA3937_RS03995 0.85 +0.9 893,462 + -0.1 893,511 + -0.7 893,577 + -0.2 893,577 + +0.1 893,578 - -2.4 893,578 - -0.6 893,578 - -1.0 893,578 - +1.5 893,578 - +0.0 893,629 + DDA3937_RS04000 0.16 -2.4 893,629 + DDA3937_RS04000 0.16 -1.1 893,630 - DDA3937_RS04000 0.17 -0.3 893,646 + DDA3937_RS04000 0.22 +0.2 893,646 + DDA3937_RS04000 0.22 +0.3 893,646 + DDA3937_RS04000 0.22 -0.5 893,646 + DDA3937_RS04000 0.22 -0.5 893,646 + DDA3937_RS04000 0.22 -0.8 893,646 + DDA3937_RS04000 0.22 +1.1 893,647 - DDA3937_RS04000 0.22 +0.8 893,647 - DDA3937_RS04000 0.22 +1.1 893,647 - DDA3937_RS04000 0.22 +0.4 893,647 - DDA3937_RS04000 0.22 +0.3 893,647 - DDA3937_RS04000 0.22 -0.5 893,687 + DDA3937_RS04000 0.36 -0.1 893,687 + DDA3937_RS04000 0.36 -0.1 893,687 + DDA3937_RS04000 0.36 -0.7 893,687 + DDA3937_RS04000 0.36 -0.3 893,687 + DDA3937_RS04000 0.36 -0.3 893,687 + DDA3937_RS04000 0.36 -2.1 893,688 - DDA3937_RS04000 0.36 +0.3 893,688 - DDA3937_RS04000 0.36 -1.3 893,688 - DDA3937_RS04000 0.36 +1.3 893,870 + +2.2 893,870 + -0.3 893,870 + +0.1 893,870 + -0.7 893,871 - +0.6 893,871 - +1.1 893,871 - -0.9 893,871 - -0.4 893,883 + -1.1 893,908 + DDA3937_RS04005 0.14 -1.1 893,960 + DDA3937_RS04005 0.33 -0.7 894,053 + DDA3937_RS04005 0.67 -0.5 894,113 + DDA3937_RS04005 0.89 -0.3 894,113 + DDA3937_RS04005 0.89 +0.9 894,114 - DDA3937_RS04005 0.89 -1.4 894,114 - DDA3937_RS04005 0.89 +0.3 894,114 - DDA3937_RS04005 0.89 -0.4 894,115 + DDA3937_RS04005 0.89 +0.2 894,115 + DDA3937_RS04005 0.89 +0.5 894,115 + DDA3937_RS04005 0.89 -1.3 894,115 + DDA3937_RS04005 0.89 +0.2 894,115 + DDA3937_RS04005 0.89 +0.1 894,115 + DDA3937_RS04005 0.89 +0.3 894,115 + DDA3937_RS04005 0.89 +0.4 894,115 + DDA3937_RS04005 0.89 +0.3 894,115 + DDA3937_RS04005 0.89 +1.1 894,115 + DDA3937_RS04005 0.89 +1.6 894,116 - -1.2 894,116 - -0.8 894,116 - +0.5 894,116 - +0.5 894,116 - -0.7 894,116 - -0.1 894,116 - -1.9 894,150 + +0.4 894,151 - +0.4 894,151 - -1.4 894,172 + -0.4 894,191 + -0.3 894,342 + -0.9 894,508 + DDA3937_RS04010 0.14 -1.4 894,508 + DDA3937_RS04010 0.14 -0.8 894,508 + DDA3937_RS04010 0.14 -1.2 894,509 - DDA3937_RS04010 0.14 +0.3 894,509 - DDA3937_RS04010 0.14 -0.1 894,509 - DDA3937_RS04010 0.14 -0.5 894,526 + DDA3937_RS04010 0.15 +0.1 894,526 + DDA3937_RS04010 0.15 -0.0 894,526 + DDA3937_RS04010 0.15 +0.3 894,526 + DDA3937_RS04010 0.15 -0.3 894,526 + DDA3937_RS04010 0.15 +0.2 894,527 - DDA3937_RS04010 0.15 -0.4 894,527 - DDA3937_RS04010 0.15 +0.7 894,569 + DDA3937_RS04010 0.17 -1.1 894,571 + DDA3937_RS04010 0.17 -0.2 894,572 - DDA3937_RS04010 0.17 +0.2 894,572 - DDA3937_RS04010 0.17 -0.2 894,709 + DDA3937_RS04010 0.23 -0.9 894,710 - DDA3937_RS04010 0.23 -0.6 894,710 - DDA3937_RS04010 0.23 +0.7 894,710 - DDA3937_RS04010 0.23 -0.2
Or see this region's nucleotide sequence