Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS03985 and DDA3937_RS03990 overlap by 4 nucleotides DDA3937_RS03990 and DDA3937_RS03995 are separated by 53 nucleotides
DDA3937_RS03985: DDA3937_RS03985 - conjugal transfer protein TraG, at 890,131 to 892,086
_RS03985
DDA3937_RS03990: DDA3937_RS03990 - CopG family transcriptional regulator, at 892,083 to 892,523
_RS03990
DDA3937_RS03995: DDA3937_RS03995 - P-type conjugative transfer ATPase TrbB, at 892,577 to 893,530
_RS03995
Position (kb) 892
893 Strain fitness (log2 ratio) -2
-1
0
1
2 at 891.214 kb on + strand, within DDA3937_RS03985 at 891.214 kb on + strand, within DDA3937_RS03985 at 891.215 kb on - strand, within DDA3937_RS03985 at 891.237 kb on + strand, within DDA3937_RS03985 at 891.337 kb on - strand, within DDA3937_RS03985 at 891.337 kb on - strand, within DDA3937_RS03985 at 891.547 kb on - strand, within DDA3937_RS03985 at 891.601 kb on + strand, within DDA3937_RS03985 at 891.601 kb on + strand, within DDA3937_RS03985 at 891.602 kb on - strand, within DDA3937_RS03985 at 891.763 kb on + strand, within DDA3937_RS03985 at 891.826 kb on + strand, within DDA3937_RS03985 at 891.826 kb on + strand, within DDA3937_RS03985 at 891.827 kb on - strand, within DDA3937_RS03985 at 891.827 kb on - strand, within DDA3937_RS03985 at 891.827 kb on - strand, within DDA3937_RS03985 at 891.827 kb on - strand, within DDA3937_RS03985 at 892.045 kb on - strand at 892.325 kb on + strand at 892.335 kb on + strand, within DDA3937_RS03990 at 892.335 kb on + strand, within DDA3937_RS03990 at 892.336 kb on - strand, within DDA3937_RS03990 at 892.530 kb on + strand at 892.531 kb on - strand at 892.531 kb on - strand at 892.576 kb on + strand at 892.576 kb on + strand at 892.576 kb on + strand at 892.576 kb on + strand at 892.576 kb on + strand at 892.576 kb on + strand at 892.576 kb on + strand at 892.576 kb on + strand at 892.576 kb on + strand at 892.576 kb on + strand at 892.576 kb on + strand at 892.576 kb on + strand at 892.577 kb on - strand at 892.577 kb on - strand at 892.577 kb on - strand at 892.577 kb on - strand at 892.577 kb on - strand at 892.577 kb on - strand at 892.577 kb on - strand at 892.577 kb on - strand at 892.577 kb on - strand at 892.583 kb on + strand at 892.584 kb on - strand at 892.648 kb on + strand at 892.648 kb on + strand at 892.649 kb on - strand at 892.649 kb on - strand at 892.649 kb on - strand at 892.836 kb on + strand, within DDA3937_RS03995 at 892.837 kb on - strand, within DDA3937_RS03995 at 892.876 kb on + strand, within DDA3937_RS03995 at 892.876 kb on + strand, within DDA3937_RS03995 at 892.910 kb on + strand, within DDA3937_RS03995 at 892.910 kb on + strand, within DDA3937_RS03995 at 892.910 kb on + strand, within DDA3937_RS03995 at 893.150 kb on - strand, within DDA3937_RS03995 at 893.150 kb on - strand, within DDA3937_RS03995 at 893.388 kb on + strand, within DDA3937_RS03995 at 893.388 kb on + strand, within DDA3937_RS03995 at 893.389 kb on - strand, within DDA3937_RS03995 at 893.389 kb on - strand, within DDA3937_RS03995 at 893.389 kb on - strand, within DDA3937_RS03995 at 893.389 kb on - strand, within DDA3937_RS03995 at 893.462 kb on + strand at 893.511 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 891,214 + DDA3937_RS03985 0.55 +0.7 891,214 + DDA3937_RS03985 0.55 +0.1 891,215 - DDA3937_RS03985 0.55 -0.8 891,237 + DDA3937_RS03985 0.57 -0.4 891,337 - DDA3937_RS03985 0.62 +0.8 891,337 - DDA3937_RS03985 0.62 +0.5 891,547 - DDA3937_RS03985 0.72 +0.6 891,601 + DDA3937_RS03985 0.75 -1.1 891,601 + DDA3937_RS03985 0.75 -0.1 891,602 - DDA3937_RS03985 0.75 -0.7 891,763 + DDA3937_RS03985 0.83 -0.7 891,826 + DDA3937_RS03985 0.87 +0.5 891,826 + DDA3937_RS03985 0.87 -0.5 891,827 - DDA3937_RS03985 0.87 +0.9 891,827 - DDA3937_RS03985 0.87 -0.7 891,827 - DDA3937_RS03985 0.87 +0.9 891,827 - DDA3937_RS03985 0.87 +0.3 892,045 - -0.6 892,325 + -0.3 892,335 + DDA3937_RS03990 0.57 -1.6 892,335 + DDA3937_RS03990 0.57 -0.3 892,336 - DDA3937_RS03990 0.57 +0.1 892,530 + +0.0 892,531 - -0.3 892,531 - -0.5 892,576 + +0.9 892,576 + -0.2 892,576 + +0.1 892,576 + +1.5 892,576 + -0.3 892,576 + -1.4 892,576 + -1.0 892,576 + +0.1 892,576 + +2.1 892,576 + -1.1 892,576 + +0.9 892,576 + +1.5 892,577 - -0.3 892,577 - -2.3 892,577 - -0.4 892,577 - -1.3 892,577 - -0.5 892,577 - -1.9 892,577 - -0.3 892,577 - -2.0 892,577 - -0.3 892,583 + +0.2 892,584 - +0.1 892,648 + -0.1 892,648 + -1.4 892,649 - +0.1 892,649 - +1.1 892,649 - -0.8 892,836 + DDA3937_RS03995 0.27 -0.5 892,837 - DDA3937_RS03995 0.27 +0.1 892,876 + DDA3937_RS03995 0.31 -1.4 892,876 + DDA3937_RS03995 0.31 -0.0 892,910 + DDA3937_RS03995 0.35 +2.5 892,910 + DDA3937_RS03995 0.35 -0.3 892,910 + DDA3937_RS03995 0.35 +0.3 893,150 - DDA3937_RS03995 0.60 -0.3 893,150 - DDA3937_RS03995 0.60 +1.4 893,388 + DDA3937_RS03995 0.85 +1.3 893,388 + DDA3937_RS03995 0.85 -1.4 893,389 - DDA3937_RS03995 0.85 +0.3 893,389 - DDA3937_RS03995 0.85 +0.5 893,389 - DDA3937_RS03995 0.85 -0.0 893,389 - DDA3937_RS03995 0.85 +0.9 893,462 + -0.1 893,511 + -0.7
Or see this region's nucleotide sequence