Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS03955 and DDA3937_RS03960 overlap by 4 nucleotides DDA3937_RS03960 and DDA3937_RS21890 are separated by 743 nucleotides
DDA3937_RS03955: DDA3937_RS03955 - DNA phosphorothioation system sulfurtransferase DndC, at 883,049 to 884,683
_RS03955
DDA3937_RS03960: DDA3937_RS03960 - DNA sulfur modification protein DndB, at 884,680 to 885,765
_RS03960
DDA3937_RS21890: DDA3937_RS21890 - DUF3363 domain-containing protein, at 886,509 to 886,736
_RS21890
Position (kb) 884
885
886 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 883.701 kb on + strand, within DDA3937_RS03955 at 883.701 kb on + strand, within DDA3937_RS03955 at 883.702 kb on - strand, within DDA3937_RS03955 at 883.702 kb on - strand, within DDA3937_RS03955 at 883.702 kb on - strand, within DDA3937_RS03955 at 883.702 kb on - strand, within DDA3937_RS03955 at 883.710 kb on + strand, within DDA3937_RS03955 at 883.710 kb on + strand, within DDA3937_RS03955 at 883.816 kb on + strand, within DDA3937_RS03955 at 883.830 kb on - strand, within DDA3937_RS03955 at 883.924 kb on + strand, within DDA3937_RS03955 at 883.924 kb on + strand, within DDA3937_RS03955 at 883.924 kb on + strand, within DDA3937_RS03955 at 883.926 kb on + strand at 883.926 kb on + strand, within DDA3937_RS03955 at 883.926 kb on + strand, within DDA3937_RS03955 at 883.926 kb on + strand, within DDA3937_RS03955 at 883.926 kb on + strand, within DDA3937_RS03955 at 883.926 kb on + strand, within DDA3937_RS03955 at 883.927 kb on - strand, within DDA3937_RS03955 at 883.927 kb on - strand, within DDA3937_RS03955 at 883.927 kb on - strand, within DDA3937_RS03955 at 883.927 kb on - strand, within DDA3937_RS03955 at 883.927 kb on - strand, within DDA3937_RS03955 at 883.927 kb on - strand, within DDA3937_RS03955 at 883.927 kb on - strand, within DDA3937_RS03955 at 883.981 kb on + strand, within DDA3937_RS03955 at 884.033 kb on + strand, within DDA3937_RS03955 at 884.033 kb on + strand, within DDA3937_RS03955 at 884.033 kb on + strand, within DDA3937_RS03955 at 884.033 kb on + strand, within DDA3937_RS03955 at 884.045 kb on - strand, within DDA3937_RS03955 at 884.058 kb on + strand, within DDA3937_RS03955 at 884.058 kb on + strand, within DDA3937_RS03955 at 884.058 kb on + strand, within DDA3937_RS03955 at 884.058 kb on + strand, within DDA3937_RS03955 at 884.058 kb on + strand, within DDA3937_RS03955 at 884.058 kb on + strand, within DDA3937_RS03955 at 884.058 kb on + strand, within DDA3937_RS03955 at 884.058 kb on + strand, within DDA3937_RS03955 at 884.058 kb on + strand at 884.059 kb on - strand, within DDA3937_RS03955 at 884.059 kb on - strand, within DDA3937_RS03955 at 884.059 kb on - strand, within DDA3937_RS03955 at 884.059 kb on - strand, within DDA3937_RS03955 at 884.062 kb on + strand, within DDA3937_RS03955 at 884.062 kb on + strand, within DDA3937_RS03955 at 884.062 kb on + strand, within DDA3937_RS03955 at 884.062 kb on + strand, within DDA3937_RS03955 at 884.063 kb on - strand, within DDA3937_RS03955 at 884.063 kb on - strand, within DDA3937_RS03955 at 884.063 kb on - strand, within DDA3937_RS03955 at 884.063 kb on - strand, within DDA3937_RS03955 at 884.063 kb on - strand, within DDA3937_RS03955 at 884.083 kb on + strand, within DDA3937_RS03955 at 884.084 kb on - strand, within DDA3937_RS03955 at 884.152 kb on + strand, within DDA3937_RS03955 at 884.155 kb on + strand, within DDA3937_RS03955 at 884.155 kb on + strand, within DDA3937_RS03955 at 884.156 kb on - strand, within DDA3937_RS03955 at 884.156 kb on - strand, within DDA3937_RS03955 at 884.156 kb on - strand, within DDA3937_RS03955 at 884.201 kb on - strand, within DDA3937_RS03955 at 884.201 kb on - strand, within DDA3937_RS03955 at 884.201 kb on - strand, within DDA3937_RS03955 at 884.209 kb on + strand, within DDA3937_RS03955 at 884.210 kb on - strand, within DDA3937_RS03955 at 884.210 kb on - strand, within DDA3937_RS03955 at 884.237 kb on - strand, within DDA3937_RS03955 at 884.246 kb on - strand, within DDA3937_RS03955 at 884.261 kb on - strand, within DDA3937_RS03955 at 884.292 kb on - strand, within DDA3937_RS03955 at 884.356 kb on + strand, within DDA3937_RS03955 at 884.357 kb on - strand, within DDA3937_RS03955 at 884.357 kb on - strand, within DDA3937_RS03955 at 884.396 kb on - strand, within DDA3937_RS03955 at 884.399 kb on + strand, within DDA3937_RS03955 at 884.399 kb on + strand, within DDA3937_RS03955 at 884.400 kb on - strand, within DDA3937_RS03955 at 884.405 kb on + strand, within DDA3937_RS03955 at 884.409 kb on - strand, within DDA3937_RS03955 at 884.409 kb on - strand, within DDA3937_RS03955 at 884.497 kb on - strand, within DDA3937_RS03955 at 884.536 kb on + strand at 884.537 kb on - strand at 884.538 kb on + strand at 884.538 kb on + strand at 884.538 kb on + strand at 884.539 kb on - strand at 884.595 kb on + strand at 884.636 kb on - strand at 884.636 kb on - strand at 884.636 kb on - strand at 884.647 kb on - strand at 884.661 kb on + strand at 884.662 kb on - strand at 884.672 kb on + strand at 884.672 kb on + strand at 884.673 kb on - strand at 884.677 kb on + strand at 884.677 kb on + strand at 884.678 kb on - strand at 884.688 kb on + strand at 884.688 kb on + strand at 884.689 kb on - strand at 884.758 kb on - strand at 884.765 kb on - strand at 884.788 kb on - strand at 884.847 kb on + strand, within DDA3937_RS03960 at 884.848 kb on - strand, within DDA3937_RS03960 at 884.848 kb on - strand, within DDA3937_RS03960 at 884.848 kb on - strand, within DDA3937_RS03960 at 884.848 kb on - strand, within DDA3937_RS03960 at 884.902 kb on + strand, within DDA3937_RS03960 at 884.902 kb on + strand, within DDA3937_RS03960 at 884.903 kb on - strand, within DDA3937_RS03960 at 884.903 kb on - strand, within DDA3937_RS03960 at 884.957 kb on + strand, within DDA3937_RS03960 at 884.957 kb on + strand, within DDA3937_RS03960 at 884.957 kb on + strand, within DDA3937_RS03960 at 884.957 kb on + strand, within DDA3937_RS03960 at 884.957 kb on + strand, within DDA3937_RS03960 at 884.958 kb on - strand, within DDA3937_RS03960 at 884.958 kb on - strand, within DDA3937_RS03960 at 884.958 kb on - strand, within DDA3937_RS03960 at 884.958 kb on - strand, within DDA3937_RS03960 at 884.958 kb on - strand, within DDA3937_RS03960 at 884.958 kb on - strand, within DDA3937_RS03960 at 884.958 kb on - strand, within DDA3937_RS03960 at 884.958 kb on - strand, within DDA3937_RS03960 at 885.130 kb on + strand, within DDA3937_RS03960 at 885.190 kb on + strand, within DDA3937_RS03960 at 885.190 kb on + strand, within DDA3937_RS03960 at 885.190 kb on + strand, within DDA3937_RS03960 at 885.190 kb on + strand, within DDA3937_RS03960 at 885.190 kb on + strand, within DDA3937_RS03960 at 885.190 kb on + strand, within DDA3937_RS03960 at 885.190 kb on + strand, within DDA3937_RS03960 at 885.190 kb on + strand, within DDA3937_RS03960 at 885.191 kb on - strand, within DDA3937_RS03960 at 885.191 kb on - strand, within DDA3937_RS03960 at 885.192 kb on + strand, within DDA3937_RS03960 at 885.193 kb on - strand, within DDA3937_RS03960 at 885.218 kb on + strand, within DDA3937_RS03960 at 885.218 kb on + strand, within DDA3937_RS03960 at 885.219 kb on - strand, within DDA3937_RS03960 at 885.254 kb on + strand, within DDA3937_RS03960 at 885.290 kb on + strand, within DDA3937_RS03960 at 885.290 kb on + strand, within DDA3937_RS03960 at 885.291 kb on - strand, within DDA3937_RS03960 at 885.291 kb on - strand, within DDA3937_RS03960 at 885.391 kb on + strand, within DDA3937_RS03960 at 885.391 kb on + strand, within DDA3937_RS03960 at 885.391 kb on + strand, within DDA3937_RS03960 at 885.392 kb on - strand, within DDA3937_RS03960 at 885.392 kb on - strand, within DDA3937_RS03960 at 885.392 kb on - strand, within DDA3937_RS03960 at 885.392 kb on - strand, within DDA3937_RS03960 at 885.411 kb on + strand, within DDA3937_RS03960 at 885.436 kb on + strand, within DDA3937_RS03960 at 885.458 kb on - strand, within DDA3937_RS03960 at 885.458 kb on - strand, within DDA3937_RS03960 at 885.463 kb on + strand, within DDA3937_RS03960 at 885.481 kb on - strand, within DDA3937_RS03960 at 885.481 kb on - strand, within DDA3937_RS03960 at 885.545 kb on + strand, within DDA3937_RS03960 at 885.546 kb on - strand, within DDA3937_RS03960 at 885.569 kb on + strand, within DDA3937_RS03960 at 885.570 kb on - strand, within DDA3937_RS03960 at 885.669 kb on + strand at 885.669 kb on + strand at 885.670 kb on - strand at 885.670 kb on - strand at 885.670 kb on - strand at 885.676 kb on - strand at 885.692 kb on + strand at 885.692 kb on + strand at 885.692 kb on + strand at 885.692 kb on + strand at 885.692 kb on + strand at 885.692 kb on - strand at 885.693 kb on - strand at 885.693 kb on - strand at 885.693 kb on - strand at 885.693 kb on - strand at 885.693 kb on - strand at 885.693 kb on - strand at 885.693 kb on - strand at 885.693 kb on - strand at 885.693 kb on - strand at 885.693 kb on - strand at 885.693 kb on - strand at 885.693 kb on - strand at 885.693 kb on - strand at 885.693 kb on - strand at 885.721 kb on + strand at 885.721 kb on + strand at 885.721 kb on + strand at 885.721 kb on + strand at 885.721 kb on + strand at 885.721 kb on + strand at 885.721 kb on + strand at 885.722 kb on - strand at 885.722 kb on - strand at 885.722 kb on - strand at 885.722 kb on - strand at 885.722 kb on - strand at 885.722 kb on - strand at 885.722 kb on - strand at 885.722 kb on - strand at 885.723 kb on + strand at 885.723 kb on + strand at 885.724 kb on - strand at 885.724 kb on - strand at 885.724 kb on - strand at 885.724 kb on - strand at 885.738 kb on - strand at 885.743 kb on + strand at 885.744 kb on - strand at 885.760 kb on - strand at 885.760 kb on - strand at 885.770 kb on + strand at 885.770 kb on + strand at 885.770 kb on + strand at 885.778 kb on - strand at 885.780 kb on - strand at 885.787 kb on - strand at 885.787 kb on - strand at 885.817 kb on - strand at 885.817 kb on - strand at 885.851 kb on - strand at 885.851 kb on - strand at 885.877 kb on - strand at 885.877 kb on - strand at 885.881 kb on + strand at 885.881 kb on + strand at 885.882 kb on - strand at 885.882 kb on - strand at 885.882 kb on - strand at 885.890 kb on - strand at 885.901 kb on + strand at 885.901 kb on + strand at 885.901 kb on + strand at 885.901 kb on + strand at 885.901 kb on + strand at 885.901 kb on + strand at 885.902 kb on - strand at 885.902 kb on - strand at 885.902 kb on - strand at 885.902 kb on - strand at 885.902 kb on - strand at 885.902 kb on - strand at 885.902 kb on - strand at 885.909 kb on + strand at 885.909 kb on + strand at 885.909 kb on + strand at 885.909 kb on + strand at 885.910 kb on - strand at 885.910 kb on - strand at 885.910 kb on - strand at 885.927 kb on + strand at 885.927 kb on + strand at 885.927 kb on + strand at 885.928 kb on - strand at 885.936 kb on + strand at 885.937 kb on - strand at 885.937 kb on - strand at 885.937 kb on - strand at 885.952 kb on - strand at 885.960 kb on + strand at 885.961 kb on - strand at 885.961 kb on - strand at 885.961 kb on - strand at 886.029 kb on - strand at 886.029 kb on - strand at 886.029 kb on - strand at 886.029 kb on - strand at 886.034 kb on + strand at 886.034 kb on + strand at 886.034 kb on + strand at 886.034 kb on + strand at 886.034 kb on + strand at 886.034 kb on + strand at 886.034 kb on + strand at 886.035 kb on - strand at 886.035 kb on - strand at 886.035 kb on - strand at 886.035 kb on - strand at 886.035 kb on - strand at 886.035 kb on - strand at 886.046 kb on - strand at 886.057 kb on + strand at 886.057 kb on + strand at 886.057 kb on + strand at 886.057 kb on + strand at 886.058 kb on - strand at 886.069 kb on + strand at 886.069 kb on + strand at 886.069 kb on + strand at 886.069 kb on + strand at 886.070 kb on - strand at 886.112 kb on - strand at 886.152 kb on - strand at 886.152 kb on - strand at 886.159 kb on + strand at 886.159 kb on + strand at 886.160 kb on - strand at 886.180 kb on + strand at 886.180 kb on + strand at 886.181 kb on - strand at 886.181 kb on - strand at 886.181 kb on - strand at 886.182 kb on + strand at 886.182 kb on + strand at 886.182 kb on + strand at 886.182 kb on + strand at 886.182 kb on + strand at 886.182 kb on + strand at 886.182 kb on + strand at 886.182 kb on + strand at 886.183 kb on - strand at 886.183 kb on - strand at 886.183 kb on - strand at 886.183 kb on - strand at 886.183 kb on - strand at 886.183 kb on - strand at 886.266 kb on + strand at 886.266 kb on + strand at 886.267 kb on - strand at 886.267 kb on - strand at 886.267 kb on - strand at 886.267 kb on - strand at 886.270 kb on + strand at 886.270 kb on + strand at 886.270 kb on + strand at 886.271 kb on - strand at 886.271 kb on - strand at 886.271 kb on - strand at 886.291 kb on - strand at 886.294 kb on + strand at 886.294 kb on + strand at 886.294 kb on + strand at 886.294 kb on + strand at 886.295 kb on - strand at 886.330 kb on + strand at 886.331 kb on - strand at 886.351 kb on + strand at 886.351 kb on + strand at 886.351 kb on + strand at 886.351 kb on + strand at 886.351 kb on + strand at 886.351 kb on + strand at 886.351 kb on + strand at 886.352 kb on - strand at 886.352 kb on - strand at 886.352 kb on - strand at 886.352 kb on - strand at 886.352 kb on - strand at 886.352 kb on - strand at 886.364 kb on + strand at 886.364 kb on + strand at 886.365 kb on - strand at 886.365 kb on - strand at 886.373 kb on + strand at 886.373 kb on + strand at 886.373 kb on + strand at 886.374 kb on - strand at 886.391 kb on + strand at 886.391 kb on + strand at 886.391 kb on + strand at 886.392 kb on - strand at 886.395 kb on + strand at 886.395 kb on + strand at 886.395 kb on + strand at 886.395 kb on + strand at 886.395 kb on + strand at 886.395 kb on + strand at 886.395 kb on + strand at 886.395 kb on + strand at 886.395 kb on + strand at 886.396 kb on - strand at 886.396 kb on - strand at 886.396 kb on - strand at 886.396 kb on - strand at 886.396 kb on - strand at 886.396 kb on - strand at 886.396 kb on - strand at 886.396 kb on - strand at 886.396 kb on - strand at 886.396 kb on - strand at 886.396 kb on - strand at 886.396 kb on - strand at 886.398 kb on - strand at 886.398 kb on - strand at 886.406 kb on + strand at 886.438 kb on - strand at 886.438 kb on - strand at 886.438 kb on - strand at 886.441 kb on + strand at 886.442 kb on - strand at 886.490 kb on + strand at 886.490 kb on + strand at 886.490 kb on + strand at 886.490 kb on + strand at 886.491 kb on - strand at 886.500 kb on + strand at 886.500 kb on + strand at 886.501 kb on - strand at 886.501 kb on - strand at 886.504 kb on + strand at 886.504 kb on + strand at 886.505 kb on - strand at 886.510 kb on + strand at 886.510 kb on + strand at 886.511 kb on - strand at 886.511 kb on - strand at 886.515 kb on + strand at 886.516 kb on - strand at 886.541 kb on + strand, within DDA3937_RS21890 at 886.541 kb on + strand, within DDA3937_RS21890 at 886.541 kb on + strand, within DDA3937_RS21890 at 886.541 kb on + strand, within DDA3937_RS21890 at 886.542 kb on - strand, within DDA3937_RS21890 at 886.542 kb on - strand, within DDA3937_RS21890 at 886.554 kb on + strand, within DDA3937_RS21890 at 886.554 kb on + strand, within DDA3937_RS21890 at 886.554 kb on + strand, within DDA3937_RS21890 at 886.555 kb on - strand, within DDA3937_RS21890 at 886.654 kb on + strand, within DDA3937_RS21890 at 886.682 kb on + strand, within DDA3937_RS21890 at 886.685 kb on + strand, within DDA3937_RS21890
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 883,701 + DDA3937_RS03955 0.40 -0.5 883,701 + DDA3937_RS03955 0.40 -0.2 883,702 - DDA3937_RS03955 0.40 +0.6 883,702 - DDA3937_RS03955 0.40 -1.4 883,702 - DDA3937_RS03955 0.40 -0.5 883,702 - DDA3937_RS03955 0.40 -0.8 883,710 + DDA3937_RS03955 0.40 +0.7 883,710 + DDA3937_RS03955 0.40 -0.1 883,816 + DDA3937_RS03955 0.47 +0.4 883,830 - DDA3937_RS03955 0.48 -0.3 883,924 + DDA3937_RS03955 0.54 +0.5 883,924 + DDA3937_RS03955 0.54 -0.5 883,924 + DDA3937_RS03955 0.54 -0.3 883,926 + +1.1 883,926 + DDA3937_RS03955 0.54 -0.5 883,926 + DDA3937_RS03955 0.54 -1.5 883,926 + DDA3937_RS03955 0.54 -0.2 883,926 + DDA3937_RS03955 0.54 -0.7 883,926 + DDA3937_RS03955 0.54 -0.8 883,927 - DDA3937_RS03955 0.54 -0.1 883,927 - DDA3937_RS03955 0.54 -0.2 883,927 - DDA3937_RS03955 0.54 -1.1 883,927 - DDA3937_RS03955 0.54 -1.0 883,927 - DDA3937_RS03955 0.54 -0.0 883,927 - DDA3937_RS03955 0.54 -0.4 883,927 - DDA3937_RS03955 0.54 -1.1 883,981 + DDA3937_RS03955 0.57 -1.3 884,033 + DDA3937_RS03955 0.60 +0.9 884,033 + DDA3937_RS03955 0.60 -2.8 884,033 + DDA3937_RS03955 0.60 -0.1 884,033 + DDA3937_RS03955 0.60 -0.7 884,045 - DDA3937_RS03955 0.61 -0.5 884,058 + DDA3937_RS03955 0.62 +0.1 884,058 + DDA3937_RS03955 0.62 -0.5 884,058 + DDA3937_RS03955 0.62 -0.1 884,058 + DDA3937_RS03955 0.62 +0.2 884,058 + DDA3937_RS03955 0.62 -0.3 884,058 + DDA3937_RS03955 0.62 -0.9 884,058 + DDA3937_RS03955 0.62 +1.2 884,058 + DDA3937_RS03955 0.62 -0.5 884,058 + +2.3 884,059 - DDA3937_RS03955 0.62 +0.1 884,059 - DDA3937_RS03955 0.62 -0.4 884,059 - DDA3937_RS03955 0.62 -0.0 884,059 - DDA3937_RS03955 0.62 -0.0 884,062 + DDA3937_RS03955 0.62 -2.8 884,062 + DDA3937_RS03955 0.62 -0.6 884,062 + DDA3937_RS03955 0.62 -0.3 884,062 + DDA3937_RS03955 0.62 -0.9 884,063 - DDA3937_RS03955 0.62 +0.0 884,063 - DDA3937_RS03955 0.62 -0.6 884,063 - DDA3937_RS03955 0.62 -1.3 884,063 - DDA3937_RS03955 0.62 +0.9 884,063 - DDA3937_RS03955 0.62 -0.6 884,083 + DDA3937_RS03955 0.63 +0.8 884,084 - DDA3937_RS03955 0.63 +0.3 884,152 + DDA3937_RS03955 0.67 +0.3 884,155 + DDA3937_RS03955 0.68 +1.4 884,155 + DDA3937_RS03955 0.68 -0.1 884,156 - DDA3937_RS03955 0.68 +0.1 884,156 - DDA3937_RS03955 0.68 -0.3 884,156 - DDA3937_RS03955 0.68 -0.2 884,201 - DDA3937_RS03955 0.70 -0.5 884,201 - DDA3937_RS03955 0.70 -1.2 884,201 - DDA3937_RS03955 0.70 -0.2 884,209 + DDA3937_RS03955 0.71 -0.5 884,210 - DDA3937_RS03955 0.71 +0.7 884,210 - DDA3937_RS03955 0.71 +0.5 884,237 - DDA3937_RS03955 0.73 +0.1 884,246 - DDA3937_RS03955 0.73 +0.8 884,261 - DDA3937_RS03955 0.74 -2.5 884,292 - DDA3937_RS03955 0.76 +0.6 884,356 + DDA3937_RS03955 0.80 -0.9 884,357 - DDA3937_RS03955 0.80 +0.1 884,357 - DDA3937_RS03955 0.80 -0.0 884,396 - DDA3937_RS03955 0.82 -0.6 884,399 + DDA3937_RS03955 0.83 -1.7 884,399 + DDA3937_RS03955 0.83 -1.4 884,400 - DDA3937_RS03955 0.83 +0.4 884,405 + DDA3937_RS03955 0.83 +0.5 884,409 - DDA3937_RS03955 0.83 -2.3 884,409 - DDA3937_RS03955 0.83 +1.1 884,497 - DDA3937_RS03955 0.89 -0.2 884,536 + -0.9 884,537 - -0.2 884,538 + -0.7 884,538 + +0.1 884,538 + +0.3 884,539 - -0.6 884,595 + -0.6 884,636 - +0.7 884,636 - -0.8 884,636 - -0.2 884,647 - +1.1 884,661 + -1.3 884,662 - 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DDA3937_RS21890 0.20 -2.1 886,654 + DDA3937_RS21890 0.64 +0.4 886,682 + DDA3937_RS21890 0.76 +0.4 886,685 + DDA3937_RS21890 0.77 -0.3
Or see this region's nucleotide sequence