Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS03830 and DDA3937_RS03840 are separated by 532 nucleotides DDA3937_RS03840 and DDA3937_RS03845 are separated by 281 nucleotides
DDA3937_RS03830: DDA3937_RS03830 - MATE family efflux transporter, at 849,018 to 850,427
_RS03830
DDA3937_RS03840: DDA3937_RS03840 - IS3 family transposase, at 850,960 to 852,069
_RS03840
DDA3937_RS03845: DDA3937_RS03845 - hypothetical protein, at 852,351 to 853,034
_RS03845
Position (kb) 850
851
852
853 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 849.960 kb on - strand, within DDA3937_RS03830 at 849.980 kb on + strand, within DDA3937_RS03830 at 850.013 kb on + strand, within DDA3937_RS03830 at 850.013 kb on + strand, within DDA3937_RS03830 at 850.013 kb on + strand, within DDA3937_RS03830 at 850.013 kb on + strand, within DDA3937_RS03830 at 850.014 kb on - strand, within DDA3937_RS03830 at 850.014 kb on - strand, within DDA3937_RS03830 at 850.014 kb on - strand, within DDA3937_RS03830 at 850.014 kb on - strand, within DDA3937_RS03830 at 850.044 kb on - strand, within DDA3937_RS03830 at 850.058 kb on - strand, within DDA3937_RS03830 at 850.136 kb on + strand, within DDA3937_RS03830 at 850.136 kb on + strand, within DDA3937_RS03830 at 850.137 kb on - strand, within DDA3937_RS03830 at 850.137 kb on - strand, within DDA3937_RS03830 at 850.143 kb on + strand, within DDA3937_RS03830 at 850.144 kb on - strand, within DDA3937_RS03830 at 850.156 kb on + strand, within DDA3937_RS03830 at 850.167 kb on + strand, within DDA3937_RS03830 at 850.167 kb on + strand, within DDA3937_RS03830 at 850.167 kb on + strand, within DDA3937_RS03830 at 850.168 kb on - strand, within DDA3937_RS03830 at 850.237 kb on + strand, within DDA3937_RS03830 at 850.240 kb on + strand, within DDA3937_RS03830 at 850.240 kb on + strand, within DDA3937_RS03830 at 850.240 kb on + strand, within DDA3937_RS03830 at 850.241 kb on - strand, within DDA3937_RS03830 at 850.241 kb on - strand, within DDA3937_RS03830 at 850.241 kb on - strand, within DDA3937_RS03830 at 850.241 kb on - strand, within DDA3937_RS03830 at 850.294 kb on + strand at 850.349 kb on + strand at 850.349 kb on + strand at 850.350 kb on - strand at 850.353 kb on + strand at 850.353 kb on + strand at 850.354 kb on - strand at 850.354 kb on - strand at 850.354 kb on - strand at 850.381 kb on + strand at 850.382 kb on - strand at 850.420 kb on + strand at 850.445 kb on + strand at 850.445 kb on + strand at 850.445 kb on + strand at 850.446 kb on - strand at 850.446 kb on - strand at 850.446 kb on - strand at 850.446 kb on - strand at 850.446 kb on - strand at 850.446 kb on - strand at 850.459 kb on + strand at 850.460 kb on - strand at 850.466 kb on + strand at 850.466 kb on + strand at 850.467 kb on - strand at 850.467 kb on - strand at 850.467 kb on - strand at 850.511 kb on + strand at 850.511 kb on + strand at 850.511 kb on + strand at 850.511 kb on + strand at 850.512 kb on - strand at 850.512 kb on - strand at 850.564 kb on + strand at 850.564 kb on + strand at 850.565 kb on - strand at 850.565 kb on - strand at 850.604 kb on + strand at 850.605 kb on - strand at 850.605 kb on - strand at 850.605 kb on - strand at 850.641 kb on - strand at 850.648 kb on + strand at 850.648 kb on + strand at 850.648 kb on + strand at 850.652 kb on + strand at 850.652 kb on + strand at 850.652 kb on + strand at 850.652 kb on + strand at 850.652 kb on + strand at 850.653 kb on - strand at 850.653 kb on - strand at 850.653 kb on - strand at 850.701 kb on - strand at 850.701 kb on - strand at 850.714 kb on + strand at 850.715 kb on - strand at 850.715 kb on - strand at 850.734 kb on + strand at 850.734 kb on + strand at 850.734 kb on + strand at 850.734 kb on + strand at 850.735 kb on - strand at 850.743 kb on + strand at 850.744 kb on - strand at 850.744 kb on - strand at 850.744 kb on - strand at 850.753 kb on + strand at 850.753 kb on + strand at 850.753 kb on + strand at 850.753 kb on + strand at 850.753 kb on + strand at 850.754 kb on - strand at 850.755 kb on + strand at 850.755 kb on + strand at 850.755 kb on + strand at 850.755 kb on + strand at 850.755 kb on + strand at 850.755 kb on + strand at 850.755 kb on + strand at 850.755 kb on + strand at 850.755 kb on + strand at 850.755 kb on + strand at 850.755 kb on + strand at 850.755 kb on + strand at 850.755 kb on + strand at 850.755 kb on + strand at 850.756 kb on - strand at 850.756 kb on - strand at 850.756 kb on - strand at 850.756 kb on - strand at 850.756 kb on - strand at 850.756 kb on - strand at 850.756 kb on - strand at 850.756 kb on - strand at 850.756 kb on - strand at 850.756 kb on - strand at 850.756 kb on - strand at 850.759 kb on + strand at 850.759 kb on + strand at 850.759 kb on + strand at 850.759 kb on + strand at 850.760 kb on - strand at 850.760 kb on - strand at 850.760 kb on - strand at 850.779 kb on - strand at 850.789 kb on + strand at 850.789 kb on + strand at 850.789 kb on + strand at 850.822 kb on + strand at 850.822 kb on + strand at 850.823 kb on - strand at 850.823 kb on - strand at 850.823 kb on - strand at 850.878 kb on + strand at 850.878 kb on + strand at 850.878 kb on + strand at 850.878 kb on + strand at 850.878 kb on + strand at 850.878 kb on + strand at 850.878 kb on + strand at 850.878 kb on + strand at 850.878 kb on + strand at 850.879 kb on - strand at 850.879 kb on - strand at 850.879 kb on - strand at 850.879 kb on - strand at 850.879 kb on - strand at 850.879 kb on - strand at 850.909 kb on - strand at 850.925 kb on - strand at 850.925 kb on - strand at 850.925 kb on - strand at 850.928 kb on - strand at 850.928 kb on - strand at 850.928 kb on - strand at 850.928 kb on - strand at 850.928 kb on - strand at 850.928 kb on - strand at 851.043 kb on + strand at 851.047 kb on + strand at 851.047 kb on + strand at 851.047 kb on + strand at 851.047 kb on + strand at 851.047 kb on + strand at 851.048 kb on - strand at 851.071 kb on + strand, within DDA3937_RS03840 at 851.071 kb on + strand, within DDA3937_RS03840 at 851.073 kb on + strand, within DDA3937_RS03840 at 851.082 kb on + strand, within DDA3937_RS03840 at 851.082 kb on + strand, within DDA3937_RS03840 at 851.083 kb on - strand, within DDA3937_RS03840 at 851.099 kb on + strand, within DDA3937_RS03840 at 851.099 kb on + strand, within DDA3937_RS03840 at 851.100 kb on - strand, within DDA3937_RS03840 at 851.100 kb on - strand, within DDA3937_RS03840 at 851.114 kb on + strand, within DDA3937_RS03840 at 851.115 kb on - strand, within DDA3937_RS03840 at 851.115 kb on - strand, within DDA3937_RS03840 at 851.115 kb on - strand, within DDA3937_RS03840 at 851.124 kb on + strand, within DDA3937_RS03840 at 851.125 kb on - strand, within DDA3937_RS03840 at 851.125 kb on - strand, within DDA3937_RS03840 at 851.318 kb on - strand, within DDA3937_RS03840 at 851.318 kb on - strand, within DDA3937_RS03840 at 851.347 kb on + strand, within DDA3937_RS03840 at 851.362 kb on - strand, within DDA3937_RS03840 at 851.694 kb on - strand, within DDA3937_RS03840 at 852.060 kb on + strand at 852.063 kb on + strand at 852.071 kb on + strand at 852.071 kb on + strand at 852.080 kb on + strand at 852.080 kb on + strand at 852.080 kb on + strand at 852.119 kb on + strand at 852.127 kb on + strand at 852.127 kb on + strand at 852.127 kb on + strand at 852.128 kb on - strand at 852.130 kb on + strand at 852.231 kb on + strand at 852.237 kb on + strand at 852.237 kb on + strand at 852.237 kb on + strand at 852.238 kb on - strand at 852.245 kb on + strand at 852.245 kb on + strand at 852.246 kb on - strand at 852.258 kb on - strand at 852.259 kb on + strand at 852.259 kb on + strand at 852.260 kb on - strand at 852.281 kb on - strand at 852.285 kb on + strand at 852.286 kb on - strand at 852.308 kb on - strand at 852.321 kb on + strand at 852.402 kb on + strand at 852.402 kb on + strand at 852.403 kb on - strand at 852.403 kb on - strand at 852.427 kb on + strand, within DDA3937_RS03845 at 852.452 kb on + strand, within DDA3937_RS03845 at 852.453 kb on - strand, within DDA3937_RS03845 at 852.453 kb on - strand, within DDA3937_RS03845 at 852.453 kb on - strand, within DDA3937_RS03845 at 852.500 kb on - strand, within DDA3937_RS03845 at 852.500 kb on - strand, within DDA3937_RS03845 at 852.522 kb on + strand, within DDA3937_RS03845 at 852.538 kb on - strand, within DDA3937_RS03845 at 852.590 kb on + strand, within DDA3937_RS03845 at 852.591 kb on - strand, within DDA3937_RS03845 at 852.622 kb on + strand, within DDA3937_RS03845 at 852.623 kb on - strand, within DDA3937_RS03845 at 852.623 kb on - strand, within DDA3937_RS03845 at 852.623 kb on - strand, within DDA3937_RS03845 at 852.623 kb on - strand, within DDA3937_RS03845 at 852.640 kb on + strand, within DDA3937_RS03845 at 852.672 kb on + strand, within DDA3937_RS03845 at 852.672 kb on + strand, within DDA3937_RS03845 at 852.672 kb on + strand, within DDA3937_RS03845 at 852.705 kb on + strand, within DDA3937_RS03845 at 852.774 kb on - strand, within DDA3937_RS03845 at 852.837 kb on + strand, within DDA3937_RS03845 at 852.837 kb on + strand, within DDA3937_RS03845 at 852.837 kb on + strand, within DDA3937_RS03845 at 852.838 kb on - strand, within DDA3937_RS03845 at 852.912 kb on + strand, within DDA3937_RS03845 at 852.912 kb on + strand, within DDA3937_RS03845 at 852.913 kb on - strand, within DDA3937_RS03845 at 852.913 kb on - strand, within DDA3937_RS03845 at 852.941 kb on + strand, within DDA3937_RS03845 at 852.941 kb on + strand, within DDA3937_RS03845 at 852.941 kb on + strand, within DDA3937_RS03845 at 853.004 kb on + strand at 853.005 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 849,960 - DDA3937_RS03830 0.67 -0.8 849,980 + DDA3937_RS03830 0.68 -0.9 850,013 + DDA3937_RS03830 0.71 +0.7 850,013 + DDA3937_RS03830 0.71 +0.7 850,013 + DDA3937_RS03830 0.71 -0.7 850,013 + DDA3937_RS03830 0.71 +1.0 850,014 - DDA3937_RS03830 0.71 +0.5 850,014 - DDA3937_RS03830 0.71 +0.3 850,014 - DDA3937_RS03830 0.71 -0.1 850,014 - DDA3937_RS03830 0.71 +0.3 850,044 - DDA3937_RS03830 0.73 +0.2 850,058 - DDA3937_RS03830 0.74 +0.3 850,136 + DDA3937_RS03830 0.79 +0.4 850,136 + DDA3937_RS03830 0.79 +0.5 850,137 - DDA3937_RS03830 0.79 +1.7 850,137 - DDA3937_RS03830 0.79 -0.2 850,143 + DDA3937_RS03830 0.80 -0.0 850,144 - DDA3937_RS03830 0.80 +0.3 850,156 + DDA3937_RS03830 0.81 -0.3 850,167 + DDA3937_RS03830 0.81 -0.6 850,167 + DDA3937_RS03830 0.81 -0.6 850,167 + DDA3937_RS03830 0.81 +0.8 850,168 - DDA3937_RS03830 0.82 -1.6 850,237 + DDA3937_RS03830 0.86 -0.0 850,240 + DDA3937_RS03830 0.87 -0.4 850,240 + DDA3937_RS03830 0.87 +0.7 850,240 + DDA3937_RS03830 0.87 -0.6 850,241 - DDA3937_RS03830 0.87 -0.6 850,241 - DDA3937_RS03830 0.87 +0.0 850,241 - DDA3937_RS03830 0.87 +0.4 850,241 - DDA3937_RS03830 0.87 +0.3 850,294 + -1.1 850,349 + -0.1 850,349 + +0.8 850,350 - +0.4 850,353 + -0.1 850,353 + -1.2 850,354 - +0.1 850,354 - -0.5 850,354 - -0.5 850,381 + -1.0 850,382 - -0.3 850,420 + +0.1 850,445 + -1.1 850,445 + +0.1 850,445 + -0.4 850,446 - -1.2 850,446 - +0.5 850,446 - -1.9 850,446 - -0.4 850,446 - -0.9 850,446 - -0.1 850,459 + -0.2 850,460 - -0.3 850,466 + -0.5 850,466 + -0.4 850,467 - -0.5 850,467 - +0.7 850,467 - -0.5 850,511 + +0.6 850,511 + -0.4 850,511 + -0.2 850,511 + +0.9 850,512 - -0.9 850,512 - +0.6 850,564 + +0.8 850,564 + -0.0 850,565 - -0.7 850,565 - -1.2 850,604 + +0.2 850,605 - -1.2 850,605 - -1.2 850,605 - +0.1 850,641 - -1.9 850,648 + -0.3 850,648 + +0.1 850,648 + +2.1 850,652 + +0.1 850,652 + -0.5 850,652 + -0.2 850,652 + +1.5 850,652 + -0.4 850,653 - +0.5 850,653 - -1.2 850,653 - +0.1 850,701 - -2.2 850,701 - -0.5 850,714 + -1.7 850,715 - -0.8 850,715 - -0.5 850,734 + -0.2 850,734 + -2.1 850,734 + +0.4 850,734 + -1.2 850,735 - -0.1 850,743 + +0.5 850,744 - -1.2 850,744 - -0.1 850,744 - -3.2 850,753 + +1.1 850,753 + -0.5 850,753 + +0.2 850,753 + -0.2 850,753 + +0.5 850,754 - -0.5 850,755 + +1.1 850,755 + -1.1 850,755 + -0.2 850,755 + -0.6 850,755 + -0.5 850,755 + +2.7 850,755 + -0.2 850,755 + +0.7 850,755 + +1.4 850,755 + -0.7 850,755 + +0.1 850,755 + -0.7 850,755 + -0.5 850,755 + -0.1 850,756 - -0.3 850,756 - -0.2 850,756 - -0.9 850,756 - -0.3 850,756 - -0.2 850,756 - +0.7 850,756 - -1.1 850,756 - +0.3 850,756 - +1.4 850,756 - -0.0 850,756 - -0.0 850,759 + -0.1 850,759 + -1.5 850,759 + -0.8 850,759 + -0.4 850,760 - -0.5 850,760 - +0.5 850,760 - +0.2 850,779 - -0.7 850,789 + -0.4 850,789 + +1.1 850,789 + -0.7 850,822 + -0.7 850,822 + -0.4 850,823 - -0.3 850,823 - -1.2 850,823 - -0.6 850,878 + -1.1 850,878 + -1.5 850,878 + +0.3 850,878 + +0.6 850,878 + +0.2 850,878 + -0.2 850,878 + -0.2 850,878 + +0.6 850,878 + -0.2 850,879 - +2.2 850,879 - +1.2 850,879 - -0.3 850,879 - +0.5 850,879 - -1.2 850,879 - -0.1 850,909 - -0.6 850,925 - -0.6 850,925 - -1.2 850,925 - -0.6 850,928 - -0.9 850,928 - -0.8 850,928 - -0.8 850,928 - -1.9 850,928 - -0.9 850,928 - +0.8 851,043 + +1.0 851,047 + +0.1 851,047 + +0.9 851,047 + +0.7 851,047 + +1.1 851,047 + -0.2 851,048 - +1.5 851,071 + DDA3937_RS03840 0.10 +0.9 851,071 + DDA3937_RS03840 0.10 -0.1 851,073 + DDA3937_RS03840 0.10 -0.7 851,082 + DDA3937_RS03840 0.11 -0.1 851,082 + DDA3937_RS03840 0.11 -0.5 851,083 - DDA3937_RS03840 0.11 +1.3 851,099 + DDA3937_RS03840 0.13 +0.3 851,099 + DDA3937_RS03840 0.13 -0.7 851,100 - DDA3937_RS03840 0.13 -1.5 851,100 - DDA3937_RS03840 0.13 +0.4 851,114 + DDA3937_RS03840 0.14 -0.0 851,115 - DDA3937_RS03840 0.14 +0.8 851,115 - DDA3937_RS03840 0.14 +0.1 851,115 - DDA3937_RS03840 0.14 -0.1 851,124 + DDA3937_RS03840 0.15 +0.3 851,125 - DDA3937_RS03840 0.15 +1.4 851,125 - DDA3937_RS03840 0.15 -0.7 851,318 - DDA3937_RS03840 0.32 -0.8 851,318 - DDA3937_RS03840 0.32 -0.6 851,347 + DDA3937_RS03840 0.35 +0.8 851,362 - DDA3937_RS03840 0.36 -0.5 851,694 - DDA3937_RS03840 0.66 -0.4 852,060 + -0.3 852,063 + +0.2 852,071 + +0.0 852,071 + -0.2 852,080 + -1.4 852,080 + +0.1 852,080 + +1.3 852,119 + -2.1 852,127 + +0.5 852,127 + +0.6 852,127 + +0.3 852,128 - +0.3 852,130 + +0.3 852,231 + +0.1 852,237 + -2.1 852,237 + +0.1 852,237 + -0.4 852,238 - -1.1 852,245 + -0.4 852,245 + -0.3 852,246 - +0.1 852,258 - -0.3 852,259 + +0.2 852,259 + +0.2 852,260 - -0.6 852,281 - +0.1 852,285 + -2.6 852,286 - -0.4 852,308 - -1.1 852,321 + -0.4 852,402 + +0.4 852,402 + -0.5 852,403 - -0.9 852,403 - -0.7 852,427 + DDA3937_RS03845 0.11 -2.1 852,452 + DDA3937_RS03845 0.15 -0.3 852,453 - DDA3937_RS03845 0.15 -1.5 852,453 - DDA3937_RS03845 0.15 +1.2 852,453 - DDA3937_RS03845 0.15 -2.2 852,500 - DDA3937_RS03845 0.22 -1.3 852,500 - DDA3937_RS03845 0.22 -0.7 852,522 + DDA3937_RS03845 0.25 -0.1 852,538 - DDA3937_RS03845 0.27 -1.7 852,590 + DDA3937_RS03845 0.35 +0.1 852,591 - DDA3937_RS03845 0.35 +1.4 852,622 + DDA3937_RS03845 0.40 -0.0 852,623 - DDA3937_RS03845 0.40 -0.0 852,623 - DDA3937_RS03845 0.40 -0.2 852,623 - DDA3937_RS03845 0.40 -0.4 852,623 - DDA3937_RS03845 0.40 -0.5 852,640 + DDA3937_RS03845 0.42 +1.0 852,672 + DDA3937_RS03845 0.47 +0.3 852,672 + DDA3937_RS03845 0.47 -0.5 852,672 + DDA3937_RS03845 0.47 +0.4 852,705 + DDA3937_RS03845 0.52 -1.7 852,774 - DDA3937_RS03845 0.62 -0.2 852,837 + DDA3937_RS03845 0.71 -0.3 852,837 + DDA3937_RS03845 0.71 -1.1 852,837 + DDA3937_RS03845 0.71 +0.4 852,838 - DDA3937_RS03845 0.71 -1.2 852,912 + DDA3937_RS03845 0.82 -0.4 852,912 + DDA3937_RS03845 0.82 -1.5 852,913 - DDA3937_RS03845 0.82 -1.3 852,913 - DDA3937_RS03845 0.82 +0.7 852,941 + DDA3937_RS03845 0.86 -0.2 852,941 + DDA3937_RS03845 0.86 +0.3 852,941 + DDA3937_RS03845 0.86 +1.0 853,004 + -0.2 853,005 - +2.1
Or see this region's nucleotide sequence