Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS03690 and DDA3937_RS03695 are separated by 158 nucleotides DDA3937_RS03695 and DDA3937_RS03700 are separated by 152 nucleotides
DDA3937_RS03690: DDA3937_RS03690 - AAA family ATPase, at 816,783 to 817,532
_RS03690
DDA3937_RS03695: DDA3937_RS03695 - hypothetical protein, at 817,691 to 818,161
_RS03695
DDA3937_RS03700: DDA3937_RS03700 - inositol 2-dehydrogenase, at 818,314 to 819,300
_RS03700
Position (kb) 817
818
819 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 816.740 kb on + strand at 816.879 kb on + strand, within DDA3937_RS03690 at 816.882 kb on - strand, within DDA3937_RS03690 at 816.954 kb on - strand, within DDA3937_RS03690 at 816.975 kb on - strand, within DDA3937_RS03690 at 817.049 kb on - strand, within DDA3937_RS03690 at 817.049 kb on - strand at 817.049 kb on - strand, within DDA3937_RS03690 at 817.081 kb on - strand, within DDA3937_RS03690 at 817.117 kb on - strand, within DDA3937_RS03690 at 817.139 kb on + strand, within DDA3937_RS03690 at 817.246 kb on - strand, within DDA3937_RS03690 at 817.275 kb on + strand at 817.428 kb on - strand, within DDA3937_RS03690 at 817.445 kb on + strand, within DDA3937_RS03690 at 817.505 kb on + strand at 817.515 kb on - strand at 817.515 kb on - strand at 817.599 kb on + strand at 817.660 kb on + strand at 817.660 kb on + strand at 817.769 kb on + strand, within DDA3937_RS03695 at 817.769 kb on + strand, within DDA3937_RS03695 at 817.769 kb on + strand, within DDA3937_RS03695 at 818.026 kb on + strand, within DDA3937_RS03695 at 818.051 kb on + strand, within DDA3937_RS03695 at 818.052 kb on - strand, within DDA3937_RS03695 at 818.052 kb on - strand, within DDA3937_RS03695 at 818.052 kb on - strand, within DDA3937_RS03695 at 818.052 kb on - strand, within DDA3937_RS03695 at 818.069 kb on + strand, within DDA3937_RS03695 at 818.086 kb on + strand, within DDA3937_RS03695 at 818.086 kb on + strand, within DDA3937_RS03695 at 818.161 kb on + strand at 818.161 kb on + strand at 818.161 kb on + strand at 818.161 kb on + strand at 818.162 kb on - strand at 818.162 kb on - strand at 818.162 kb on - strand at 818.162 kb on - strand at 818.162 kb on - strand at 818.162 kb on - strand at 818.162 kb on - strand at 818.246 kb on + strand at 818.247 kb on - strand at 818.272 kb on + strand at 818.273 kb on - strand at 818.273 kb on - strand at 818.309 kb on + strand at 818.310 kb on - strand at 818.320 kb on - strand at 818.399 kb on - strand at 818.445 kb on + strand, within DDA3937_RS03700 at 818.449 kb on + strand, within DDA3937_RS03700 at 818.450 kb on - strand, within DDA3937_RS03700 at 818.499 kb on - strand, within DDA3937_RS03700 at 818.754 kb on + strand, within DDA3937_RS03700 at 818.755 kb on - strand, within DDA3937_RS03700 at 818.788 kb on + strand, within DDA3937_RS03700 at 818.788 kb on + strand, within DDA3937_RS03700 at 818.789 kb on - strand, within DDA3937_RS03700 at 819.066 kb on + strand, within DDA3937_RS03700 at 819.157 kb on + strand, within DDA3937_RS03700
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 816,740 + -0.3 816,879 + DDA3937_RS03690 0.13 +0.6 816,882 - DDA3937_RS03690 0.13 -1.2 816,954 - DDA3937_RS03690 0.23 -1.7 816,975 - DDA3937_RS03690 0.26 -0.2 817,049 - DDA3937_RS03690 0.35 -1.1 817,049 - +2.1 817,049 - DDA3937_RS03690 0.35 -0.2 817,081 - DDA3937_RS03690 0.40 -0.5 817,117 - DDA3937_RS03690 0.45 -0.5 817,139 + DDA3937_RS03690 0.47 -0.1 817,246 - DDA3937_RS03690 0.62 -3.2 817,275 + +0.5 817,428 - DDA3937_RS03690 0.86 +0.3 817,445 + DDA3937_RS03690 0.88 -0.0 817,505 + -0.4 817,515 - -0.7 817,515 - +0.8 817,599 + +0.1 817,660 + -0.4 817,660 + -0.5 817,769 + DDA3937_RS03695 0.17 -1.4 817,769 + DDA3937_RS03695 0.17 +0.9 817,769 + DDA3937_RS03695 0.17 +0.1 818,026 + DDA3937_RS03695 0.71 -0.3 818,051 + DDA3937_RS03695 0.76 +0.9 818,052 - DDA3937_RS03695 0.77 +0.2 818,052 - DDA3937_RS03695 0.77 +0.3 818,052 - DDA3937_RS03695 0.77 +0.9 818,052 - DDA3937_RS03695 0.77 +0.0 818,069 + DDA3937_RS03695 0.80 -0.0 818,086 + DDA3937_RS03695 0.84 +0.7 818,086 + DDA3937_RS03695 0.84 -1.4 818,161 + -0.7 818,161 + -0.2 818,161 + +0.2 818,161 + -0.4 818,162 - +0.6 818,162 - -0.0 818,162 - -0.4 818,162 - -0.4 818,162 - -0.1 818,162 - +0.9 818,162 - -0.2 818,246 + -0.2 818,247 - +0.5 818,272 + +1.2 818,273 - -0.0 818,273 - +0.7 818,309 + -1.9 818,310 - +0.1 818,320 - +0.0 818,399 - +0.2 818,445 + DDA3937_RS03700 0.13 +0.5 818,449 + DDA3937_RS03700 0.14 +0.3 818,450 - DDA3937_RS03700 0.14 -0.3 818,499 - DDA3937_RS03700 0.19 -0.8 818,754 + DDA3937_RS03700 0.45 -0.3 818,755 - DDA3937_RS03700 0.45 -0.5 818,788 + DDA3937_RS03700 0.48 +0.7 818,788 + DDA3937_RS03700 0.48 +0.3 818,789 - DDA3937_RS03700 0.48 -0.4 819,066 + DDA3937_RS03700 0.76 -0.1 819,157 + DDA3937_RS03700 0.85 +0.4
Or see this region's nucleotide sequence