Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS03530 and DDA3937_RS03535 are separated by 227 nucleotides DDA3937_RS03535 and DDA3937_RS03540 are separated by 420 nucleotides
DDA3937_RS03530: DDA3937_RS03530 - DUF4880 domain-containing protein, at 775,973 to 776,926
_RS03530
DDA3937_RS03535: DDA3937_RS03535 - AI-2E family transporter, at 777,154 to 778,164
_RS03535
DDA3937_RS03540: DDA3937_RS03540 - MFS transporter, at 778,585 to 780,111
_RS03540
Position (kb) 777
778
779 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 776.259 kb on + strand, within DDA3937_RS03530 at 776.259 kb on + strand, within DDA3937_RS03530 at 776.259 kb on + strand, within DDA3937_RS03530 at 776.260 kb on - strand, within DDA3937_RS03530 at 776.260 kb on - strand, within DDA3937_RS03530 at 776.260 kb on - strand, within DDA3937_RS03530 at 776.260 kb on - strand, within DDA3937_RS03530 at 776.264 kb on + strand at 776.265 kb on - strand, within DDA3937_RS03530 at 776.285 kb on + strand, within DDA3937_RS03530 at 776.286 kb on - strand, within DDA3937_RS03530 at 776.458 kb on + strand, within DDA3937_RS03530 at 776.458 kb on + strand, within DDA3937_RS03530 at 776.527 kb on + strand, within DDA3937_RS03530 at 776.527 kb on + strand, within DDA3937_RS03530 at 776.528 kb on - strand, within DDA3937_RS03530 at 776.528 kb on - strand, within DDA3937_RS03530 at 776.573 kb on + strand, within DDA3937_RS03530 at 776.573 kb on + strand, within DDA3937_RS03530 at 776.574 kb on - strand, within DDA3937_RS03530 at 776.636 kb on + strand, within DDA3937_RS03530 at 776.636 kb on + strand, within DDA3937_RS03530 at 776.637 kb on - strand, within DDA3937_RS03530 at 776.873 kb on - strand at 776.968 kb on + strand at 776.974 kb on + strand at 776.979 kb on + strand at 776.979 kb on + strand at 776.979 kb on + strand at 776.979 kb on + strand at 776.979 kb on + strand at 776.979 kb on + strand at 776.979 kb on + strand at 776.979 kb on + strand at 776.979 kb on + strand at 776.980 kb on - strand at 776.980 kb on - strand at 776.980 kb on - strand at 776.980 kb on - strand at 776.980 kb on - strand at 777.030 kb on + strand at 777.048 kb on + strand at 777.051 kb on + strand at 777.052 kb on - strand at 777.131 kb on - strand at 777.153 kb on + strand at 777.153 kb on + strand at 777.153 kb on + strand at 777.153 kb on + strand at 777.154 kb on - strand at 777.154 kb on - strand at 777.154 kb on - strand at 777.154 kb on - strand at 777.154 kb on - strand at 777.201 kb on + strand at 777.202 kb on - strand at 777.253 kb on - strand at 777.271 kb on + strand, within DDA3937_RS03535 at 777.271 kb on + strand, within DDA3937_RS03535 at 777.272 kb on - strand, within DDA3937_RS03535 at 777.357 kb on + strand, within DDA3937_RS03535 at 777.494 kb on - strand, within DDA3937_RS03535 at 777.506 kb on - strand, within DDA3937_RS03535 at 777.655 kb on + strand, within DDA3937_RS03535 at 777.655 kb on + strand, within DDA3937_RS03535 at 777.655 kb on + strand, within DDA3937_RS03535 at 777.655 kb on + strand, within DDA3937_RS03535 at 777.656 kb on - strand, within DDA3937_RS03535 at 777.656 kb on - strand, within DDA3937_RS03535 at 777.656 kb on - strand, within DDA3937_RS03535 at 777.657 kb on + strand, within DDA3937_RS03535 at 777.658 kb on - strand, within DDA3937_RS03535 at 777.658 kb on - strand, within DDA3937_RS03535 at 777.658 kb on - strand, within DDA3937_RS03535 at 777.658 kb on - strand, within DDA3937_RS03535 at 777.764 kb on + strand, within DDA3937_RS03535 at 777.894 kb on + strand, within DDA3937_RS03535 at 777.895 kb on - strand, within DDA3937_RS03535 at 777.895 kb on - strand, within DDA3937_RS03535 at 777.970 kb on + strand, within DDA3937_RS03535 at 777.970 kb on + strand, within DDA3937_RS03535 at 777.971 kb on - strand, within DDA3937_RS03535 at 777.997 kb on + strand, within DDA3937_RS03535 at 777.998 kb on - strand, within DDA3937_RS03535 at 777.998 kb on - strand, within DDA3937_RS03535 at 777.998 kb on - strand, within DDA3937_RS03535 at 778.117 kb on + strand at 778.118 kb on - strand at 778.118 kb on - strand at 778.118 kb on - strand at 778.118 kb on - strand at 778.118 kb on - strand at 778.118 kb on - strand at 778.118 kb on - strand at 778.118 kb on - strand at 778.118 kb on - strand at 778.120 kb on + strand at 778.121 kb on - strand at 778.121 kb on - strand at 778.160 kb on + strand at 778.160 kb on + strand at 778.160 kb on + strand at 778.160 kb on + strand at 778.160 kb on + strand at 778.161 kb on - strand at 778.161 kb on - strand at 778.173 kb on + strand at 778.173 kb on + strand at 778.195 kb on + strand at 778.196 kb on - strand at 778.196 kb on - strand at 778.196 kb on - strand at 778.294 kb on + strand at 778.294 kb on + strand at 778.295 kb on - strand at 778.295 kb on - strand at 778.307 kb on + strand at 778.307 kb on + strand at 778.307 kb on + strand at 778.307 kb on + strand at 778.307 kb on + strand at 778.307 kb on + strand at 778.307 kb on + strand at 778.308 kb on - strand at 778.308 kb on - strand at 778.308 kb on - strand at 778.308 kb on - strand at 778.308 kb on - strand at 778.308 kb on - strand at 778.308 kb on - strand at 778.308 kb on - strand at 778.312 kb on + strand at 778.313 kb on - strand at 778.409 kb on - strand at 778.418 kb on - strand at 778.440 kb on + strand at 778.527 kb on + strand at 778.528 kb on - strand at 778.569 kb on + strand at 778.570 kb on - strand at 778.570 kb on - strand at 778.580 kb on + strand at 778.580 kb on + strand at 778.664 kb on + strand at 778.740 kb on + strand, within DDA3937_RS03540 at 778.740 kb on + strand, within DDA3937_RS03540 at 778.776 kb on + strand, within DDA3937_RS03540 at 778.802 kb on + strand, within DDA3937_RS03540 at 778.802 kb on + strand, within DDA3937_RS03540 at 778.802 kb on + strand, within DDA3937_RS03540 at 778.802 kb on + strand, within DDA3937_RS03540 at 778.803 kb on - strand, within DDA3937_RS03540 at 778.803 kb on - strand, within DDA3937_RS03540 at 778.805 kb on + strand, within DDA3937_RS03540 at 778.805 kb on + strand, within DDA3937_RS03540 at 778.805 kb on + strand, within DDA3937_RS03540 at 778.805 kb on + strand, within DDA3937_RS03540 at 778.805 kb on + strand, within DDA3937_RS03540 at 778.805 kb on + strand, within DDA3937_RS03540 at 778.805 kb on + strand, within DDA3937_RS03540 at 778.805 kb on + strand, within DDA3937_RS03540 at 778.805 kb on - strand, within DDA3937_RS03540 at 778.806 kb on - strand, within DDA3937_RS03540 at 778.806 kb on - strand, within DDA3937_RS03540 at 778.806 kb on - strand, within DDA3937_RS03540 at 778.806 kb on - strand, within DDA3937_RS03540 at 778.806 kb on - strand, within DDA3937_RS03540 at 778.852 kb on + strand, within DDA3937_RS03540 at 778.852 kb on + strand, within DDA3937_RS03540 at 778.852 kb on + strand, within DDA3937_RS03540 at 778.853 kb on - strand, within DDA3937_RS03540 at 778.853 kb on - strand, within DDA3937_RS03540 at 778.853 kb on - strand, within DDA3937_RS03540 at 778.853 kb on - strand, within DDA3937_RS03540 at 778.985 kb on + strand, within DDA3937_RS03540 at 778.986 kb on - strand, within DDA3937_RS03540 at 778.986 kb on - strand, within DDA3937_RS03540 at 779.042 kb on + strand, within DDA3937_RS03540 at 779.043 kb on - strand, within DDA3937_RS03540 at 779.043 kb on - strand, within DDA3937_RS03540 at 779.043 kb on - strand, within DDA3937_RS03540 at 779.043 kb on - strand, within DDA3937_RS03540 at 779.061 kb on - strand, within DDA3937_RS03540 at 779.061 kb on - strand, within DDA3937_RS03540 at 779.061 kb on - strand, within DDA3937_RS03540 at 779.063 kb on + strand, within DDA3937_RS03540 at 779.063 kb on + strand at 779.063 kb on + strand, within DDA3937_RS03540 at 779.063 kb on + strand, within DDA3937_RS03540 at 779.063 kb on + strand, within DDA3937_RS03540 at 779.063 kb on + strand, within DDA3937_RS03540 at 779.063 kb on + strand, within DDA3937_RS03540 at 779.063 kb on + strand, within DDA3937_RS03540 at 779.064 kb on - strand, within DDA3937_RS03540 at 779.064 kb on - strand, within DDA3937_RS03540 at 779.064 kb on - strand, within DDA3937_RS03540 at 779.064 kb on - strand, within DDA3937_RS03540 at 779.064 kb on - strand, within DDA3937_RS03540 at 779.068 kb on - strand, within DDA3937_RS03540 at 779.086 kb on + strand, within DDA3937_RS03540 at 779.147 kb on + strand, within DDA3937_RS03540 at 779.147 kb on + strand, within DDA3937_RS03540 at 779.147 kb on + strand, within DDA3937_RS03540 at 779.148 kb on - strand, within DDA3937_RS03540
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 776,259 + DDA3937_RS03530 0.30 -0.0 776,259 + DDA3937_RS03530 0.30 +0.0 776,259 + DDA3937_RS03530 0.30 -0.5 776,260 - DDA3937_RS03530 0.30 -0.9 776,260 - DDA3937_RS03530 0.30 -0.2 776,260 - DDA3937_RS03530 0.30 +0.4 776,260 - DDA3937_RS03530 0.30 +0.8 776,264 + +1.1 776,265 - DDA3937_RS03530 0.31 +1.1 776,285 + DDA3937_RS03530 0.33 -1.9 776,286 - DDA3937_RS03530 0.33 +0.1 776,458 + DDA3937_RS03530 0.51 -0.6 776,458 + DDA3937_RS03530 0.51 -0.3 776,527 + DDA3937_RS03530 0.58 -0.1 776,527 + DDA3937_RS03530 0.58 -0.8 776,528 - DDA3937_RS03530 0.58 -0.9 776,528 - DDA3937_RS03530 0.58 -0.1 776,573 + DDA3937_RS03530 0.63 -1.9 776,573 + DDA3937_RS03530 0.63 -0.7 776,574 - DDA3937_RS03530 0.63 -1.5 776,636 + DDA3937_RS03530 0.69 -0.3 776,636 + DDA3937_RS03530 0.69 -0.3 776,637 - DDA3937_RS03530 0.70 -0.5 776,873 - +0.4 776,968 + -1.4 776,974 + +0.3 776,979 + -0.8 776,979 + +0.4 776,979 + -0.9 776,979 + -0.3 776,979 + -1.5 776,979 + +0.6 776,979 + -0.5 776,979 + +0.4 776,979 + +0.7 776,980 - -1.5 776,980 - +0.2 776,980 - -0.2 776,980 - -0.9 776,980 - -1.9 777,030 + +0.9 777,048 + -0.0 777,051 + +0.0 777,052 - +0.1 777,131 - +0.8 777,153 + -1.0 777,153 + +0.9 777,153 + +0.0 777,153 + -0.5 777,154 - -0.7 777,154 - +0.2 777,154 - +0.1 777,154 - -0.6 777,154 - +0.5 777,201 + +0.4 777,202 - -0.6 777,253 - -0.1 777,271 + DDA3937_RS03535 0.12 +0.4 777,271 + DDA3937_RS03535 0.12 -0.9 777,272 - DDA3937_RS03535 0.12 +0.5 777,357 + DDA3937_RS03535 0.20 -0.2 777,494 - DDA3937_RS03535 0.34 +1.1 777,506 - DDA3937_RS03535 0.35 -0.1 777,655 + DDA3937_RS03535 0.50 -0.2 777,655 + DDA3937_RS03535 0.50 +0.1 777,655 + DDA3937_RS03535 0.50 +0.2 777,655 + DDA3937_RS03535 0.50 +0.8 777,656 - DDA3937_RS03535 0.50 +0.3 777,656 - DDA3937_RS03535 0.50 -0.9 777,656 - DDA3937_RS03535 0.50 +0.2 777,657 + DDA3937_RS03535 0.50 -0.7 777,658 - DDA3937_RS03535 0.50 -0.1 777,658 - DDA3937_RS03535 0.50 -0.8 777,658 - DDA3937_RS03535 0.50 -1.0 777,658 - DDA3937_RS03535 0.50 +0.4 777,764 + DDA3937_RS03535 0.60 +0.3 777,894 + DDA3937_RS03535 0.73 -0.0 777,895 - DDA3937_RS03535 0.73 +0.6 777,895 - DDA3937_RS03535 0.73 +0.5 777,970 + DDA3937_RS03535 0.81 +0.0 777,970 + DDA3937_RS03535 0.81 -0.6 777,971 - DDA3937_RS03535 0.81 +0.1 777,997 + DDA3937_RS03535 0.83 +1.1 777,998 - DDA3937_RS03535 0.83 -0.7 777,998 - DDA3937_RS03535 0.83 +1.7 777,998 - DDA3937_RS03535 0.83 +0.2 778,117 + +3.1 778,118 - +0.2 778,118 - +1.1 778,118 - -0.5 778,118 - +1.0 778,118 - -0.1 778,118 - +0.1 778,118 - -0.5 778,118 - +0.1 778,118 - -0.1 778,120 + +0.2 778,121 - -1.1 778,121 - -0.3 778,160 + -0.2 778,160 + +0.2 778,160 + -0.1 778,160 + -0.3 778,160 + -0.5 778,161 - -0.3 778,161 - +0.5 778,173 + -1.2 778,173 + +0.5 778,195 + -1.7 778,196 - +0.0 778,196 - +1.5 778,196 - -1.2 778,294 + +1.1 778,294 + -0.7 778,295 - -0.1 778,295 - -0.5 778,307 + +0.8 778,307 + +0.4 778,307 + -0.9 778,307 + +1.1 778,307 + -1.2 778,307 + -0.9 778,307 + -0.9 778,308 - +0.8 778,308 - -1.7 778,308 - +0.5 778,308 - +0.3 778,308 - -0.1 778,308 - -1.7 778,308 - -0.3 778,308 - -0.0 778,312 + -0.4 778,313 - -0.8 778,409 - +1.3 778,418 - +1.4 778,440 + +0.1 778,527 + -0.1 778,528 - +0.7 778,569 + +0.8 778,570 - -0.4 778,570 - -0.1 778,580 + -1.5 778,580 + -0.5 778,664 + +1.1 778,740 + DDA3937_RS03540 0.10 +0.1 778,740 + DDA3937_RS03540 0.10 -0.2 778,776 + DDA3937_RS03540 0.13 +0.2 778,802 + DDA3937_RS03540 0.14 -0.1 778,802 + DDA3937_RS03540 0.14 +0.7 778,802 + DDA3937_RS03540 0.14 +0.4 778,802 + DDA3937_RS03540 0.14 -1.2 778,803 - DDA3937_RS03540 0.14 -0.2 778,803 - DDA3937_RS03540 0.14 -0.8 778,805 + DDA3937_RS03540 0.14 +0.7 778,805 + DDA3937_RS03540 0.14 -0.1 778,805 + DDA3937_RS03540 0.14 +0.1 778,805 + DDA3937_RS03540 0.14 -0.1 778,805 + DDA3937_RS03540 0.14 +0.1 778,805 + DDA3937_RS03540 0.14 +0.6 778,805 + DDA3937_RS03540 0.14 -1.5 778,805 + DDA3937_RS03540 0.14 +0.8 778,805 - DDA3937_RS03540 0.14 -1.4 778,806 - DDA3937_RS03540 0.14 +0.5 778,806 - DDA3937_RS03540 0.14 -0.7 778,806 - DDA3937_RS03540 0.14 +0.7 778,806 - DDA3937_RS03540 0.14 +0.6 778,806 - DDA3937_RS03540 0.14 -0.2 778,852 + DDA3937_RS03540 0.17 -0.8 778,852 + DDA3937_RS03540 0.17 -0.3 778,852 + DDA3937_RS03540 0.17 +0.4 778,853 - DDA3937_RS03540 0.18 -1.2 778,853 - DDA3937_RS03540 0.18 -0.7 778,853 - DDA3937_RS03540 0.18 -0.2 778,853 - DDA3937_RS03540 0.18 -0.5 778,985 + DDA3937_RS03540 0.26 -0.6 778,986 - DDA3937_RS03540 0.26 -0.2 778,986 - DDA3937_RS03540 0.26 +0.1 779,042 + DDA3937_RS03540 0.30 +0.3 779,043 - DDA3937_RS03540 0.30 -0.4 779,043 - DDA3937_RS03540 0.30 +0.6 779,043 - DDA3937_RS03540 0.30 -0.3 779,043 - DDA3937_RS03540 0.30 +0.3 779,061 - DDA3937_RS03540 0.31 +0.1 779,061 - DDA3937_RS03540 0.31 +0.4 779,061 - DDA3937_RS03540 0.31 +0.4 779,063 + DDA3937_RS03540 0.31 -0.4 779,063 + +1.1 779,063 + DDA3937_RS03540 0.31 -0.0 779,063 + DDA3937_RS03540 0.31 +1.0 779,063 + DDA3937_RS03540 0.31 +0.3 779,063 + DDA3937_RS03540 0.31 -1.0 779,063 + DDA3937_RS03540 0.31 +0.6 779,063 + DDA3937_RS03540 0.31 -0.2 779,064 - DDA3937_RS03540 0.31 +2.1 779,064 - DDA3937_RS03540 0.31 +0.2 779,064 - DDA3937_RS03540 0.31 +0.2 779,064 - DDA3937_RS03540 0.31 -0.1 779,064 - DDA3937_RS03540 0.31 -2.4 779,068 - DDA3937_RS03540 0.32 -0.0 779,086 + DDA3937_RS03540 0.33 -1.1 779,147 + DDA3937_RS03540 0.37 +0.1 779,147 + DDA3937_RS03540 0.37 +0.8 779,147 + DDA3937_RS03540 0.37 +1.4 779,148 - DDA3937_RS03540 0.37 +0.1
Or see this region's nucleotide sequence