Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS03480 and DDA3937_RS03485 are separated by 770 nucleotides DDA3937_RS03485 and DDA3937_RS03490 are separated by 592 nucleotides
DDA3937_RS03480: DDA3937_RS03480 - acetate--CoA ligase, at 761,628 to 763,589
_RS03480
DDA3937_RS03485: DDA3937_RS03485 - hypothetical protein, at 764,360 to 764,752
_RS03485
DDA3937_RS03490: DDA3937_RS03490 - TonB-dependent siderophore receptor, at 765,345 to 767,732
_RS03490
Position (kb) 764
765 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 763.365 kb on + strand, within DDA3937_RS03480 at 763.365 kb on + strand, within DDA3937_RS03480 at 763.365 kb on + strand, within DDA3937_RS03480 at 763.365 kb on + strand, within DDA3937_RS03480 at 763.365 kb on + strand, within DDA3937_RS03480 at 763.365 kb on + strand, within DDA3937_RS03480 at 763.365 kb on + strand, within DDA3937_RS03480 at 763.365 kb on + strand, within DDA3937_RS03480 at 763.365 kb on + strand, within DDA3937_RS03480 at 763.366 kb on - strand, within DDA3937_RS03480 at 763.366 kb on - strand, within DDA3937_RS03480 at 763.371 kb on - strand, within DDA3937_RS03480 at 763.371 kb on - strand, within DDA3937_RS03480 at 763.371 kb on - strand, within DDA3937_RS03480 at 763.435 kb on + strand at 763.435 kb on + strand at 763.507 kb on + strand at 763.508 kb on - strand at 763.518 kb on - strand at 763.518 kb on - strand at 763.520 kb on - strand at 763.563 kb on + strand at 763.565 kb on + strand at 763.565 kb on + strand at 763.565 kb on + strand at 763.565 kb on + strand at 763.566 kb on - strand at 763.574 kb on + strand at 763.574 kb on + strand at 763.574 kb on + strand at 763.575 kb on - strand at 763.577 kb on + strand at 763.577 kb on + strand at 763.577 kb on + strand at 763.577 kb on + strand at 763.578 kb on - strand at 763.579 kb on + strand at 763.579 kb on + strand at 763.579 kb on + strand at 763.579 kb on + strand at 763.580 kb on - strand at 763.580 kb on - strand at 763.589 kb on + strand at 763.615 kb on + strand at 763.615 kb on + strand at 763.616 kb on - strand at 763.618 kb on + strand at 763.618 kb on + strand at 763.618 kb on + strand at 763.619 kb on - strand at 763.630 kb on + strand at 763.631 kb on - strand at 763.634 kb on + strand at 763.634 kb on + strand at 763.635 kb on - strand at 763.637 kb on + strand at 763.637 kb on + strand at 763.717 kb on - strand at 763.717 kb on - strand at 763.722 kb on + strand at 763.728 kb on + strand at 763.728 kb on + strand at 763.728 kb on + strand at 763.728 kb on + strand at 763.729 kb on - strand at 763.729 kb on - strand at 763.833 kb on + strand at 763.868 kb on + strand at 763.874 kb on + strand at 763.875 kb on - strand at 763.925 kb on - strand at 763.956 kb on + strand at 763.958 kb on + strand at 763.958 kb on + strand at 763.958 kb on + strand at 763.958 kb on + strand at 763.959 kb on - strand at 763.959 kb on - strand at 763.959 kb on - strand at 763.964 kb on + strand at 763.964 kb on + strand at 763.975 kb on - strand at 763.989 kb on + strand at 763.990 kb on - strand at 764.043 kb on + strand at 764.056 kb on + strand at 764.057 kb on - strand at 764.057 kb on - strand at 764.058 kb on + strand at 764.079 kb on + strand at 764.083 kb on + strand at 764.083 kb on + strand at 764.083 kb on + strand at 764.083 kb on + strand at 764.083 kb on + strand at 764.124 kb on + strand at 764.132 kb on + strand at 764.132 kb on + strand at 764.132 kb on + strand at 764.132 kb on + strand at 764.134 kb on + strand at 764.137 kb on + strand at 764.137 kb on + strand at 764.137 kb on + strand at 764.138 kb on - strand at 764.138 kb on - strand at 764.141 kb on + strand at 764.141 kb on + strand at 764.141 kb on + strand at 764.189 kb on + strand at 764.275 kb on + strand at 764.311 kb on - strand at 764.340 kb on + strand at 764.340 kb on + strand at 764.359 kb on + strand at 764.359 kb on + strand at 764.360 kb on - strand at 764.360 kb on - strand at 764.371 kb on - strand at 764.400 kb on + strand at 764.400 kb on + strand, within DDA3937_RS03485 at 764.460 kb on + strand, within DDA3937_RS03485 at 764.482 kb on + strand, within DDA3937_RS03485 at 764.654 kb on - strand, within DDA3937_RS03485 at 764.654 kb on - strand, within DDA3937_RS03485 at 764.750 kb on + strand at 764.771 kb on + strand at 764.779 kb on + strand at 764.780 kb on - strand at 764.780 kb on - strand at 764.785 kb on - strand at 764.796 kb on + strand at 764.797 kb on - strand at 764.832 kb on + strand at 764.841 kb on + strand at 764.841 kb on + strand at 764.841 kb on + strand at 764.841 kb on + strand at 764.842 kb on - strand at 764.842 kb on - strand at 764.842 kb on - strand at 764.842 kb on - strand at 764.842 kb on - strand at 764.842 kb on - strand at 764.851 kb on + strand at 764.886 kb on - strand at 764.886 kb on - strand at 764.892 kb on - strand at 764.892 kb on - strand at 764.922 kb on + strand at 764.937 kb on - strand at 764.941 kb on - strand at 764.954 kb on - strand at 764.959 kb on + strand at 764.959 kb on + strand at 764.960 kb on - strand at 764.960 kb on - strand at 764.960 kb on - strand at 764.960 kb on - strand at 764.960 kb on - strand at 764.976 kb on + strand at 764.987 kb on - strand at 764.987 kb on - strand at 765.040 kb on - strand at 765.055 kb on + strand at 765.056 kb on - strand at 765.059 kb on + strand at 765.060 kb on - strand at 765.079 kb on + strand at 765.079 kb on + strand at 765.079 kb on + strand at 765.079 kb on + strand at 765.079 kb on + strand at 765.080 kb on - strand at 765.102 kb on + strand at 765.209 kb on + strand at 765.294 kb on + strand at 765.295 kb on - strand at 765.345 kb on - strand at 765.345 kb on - strand at 765.345 kb on - strand at 765.345 kb on - strand at 765.345 kb on - strand at 765.354 kb on + strand at 765.354 kb on + strand at 765.354 kb on + strand at 765.354 kb on + strand at 765.354 kb on + strand at 765.354 kb on + strand at 765.355 kb on - strand at 765.355 kb on - strand at 765.355 kb on - strand at 765.355 kb on - strand at 765.399 kb on + strand at 765.400 kb on - strand at 765.460 kb on - strand at 765.460 kb on - strand at 765.531 kb on + strand at 765.532 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 763,365 + DDA3937_RS03480 0.89 -1.4 763,365 + DDA3937_RS03480 0.89 -1.2 763,365 + DDA3937_RS03480 0.89 -1.4 763,365 + DDA3937_RS03480 0.89 -1.5 763,365 + DDA3937_RS03480 0.89 -1.1 763,365 + DDA3937_RS03480 0.89 -1.6 763,365 + DDA3937_RS03480 0.89 -2.1 763,365 + DDA3937_RS03480 0.89 -0.9 763,365 + DDA3937_RS03480 0.89 -1.9 763,366 - DDA3937_RS03480 0.89 -0.6 763,366 - DDA3937_RS03480 0.89 -0.6 763,371 - DDA3937_RS03480 0.89 -0.1 763,371 - DDA3937_RS03480 0.89 +1.1 763,371 - DDA3937_RS03480 0.89 -1.2 763,435 + -1.3 763,435 + +0.1 763,507 + -1.8 763,508 - +0.1 763,518 - -0.1 763,518 - -0.9 763,520 - -0.4 763,563 + -0.7 763,565 + -0.9 763,565 + -1.9 763,565 + -2.4 763,565 + -1.0 763,566 - +0.4 763,574 + -0.3 763,574 + -2.2 763,574 + -1.0 763,575 - -0.2 763,577 + -0.3 763,577 + -1.3 763,577 + -0.0 763,577 + -0.6 763,578 - +1.1 763,579 + -0.1 763,579 + -1.5 763,579 + -1.7 763,579 + -1.0 763,580 - -1.1 763,580 - -2.9 763,589 + -0.5 763,615 + +1.1 763,615 + +0.7 763,616 - +0.1 763,618 + -1.3 763,618 + +0.1 763,618 + -1.1 763,619 - -0.2 763,630 + -0.6 763,631 - +0.8 763,634 + -1.2 763,634 + -1.2 763,635 - -0.9 763,637 + -0.7 763,637 + -0.3 763,717 - -0.9 763,717 - +1.1 763,722 + -1.0 763,728 + -1.3 763,728 + +0.8 763,728 + +0.8 763,728 + +0.8 763,729 - +0.4 763,729 - -0.1 763,833 + -1.6 763,868 + +0.2 763,874 + +0.8 763,875 - +0.1 763,925 - +0.8 763,956 + -0.9 763,958 + +0.6 763,958 + -0.2 763,958 + +0.0 763,958 + -1.2 763,959 - -0.4 763,959 - -2.1 763,959 - -0.9 763,964 + -1.7 763,964 + -0.7 763,975 - -1.2 763,989 + +0.4 763,990 - -0.9 764,043 + +0.2 764,056 + -0.5 764,057 - -1.7 764,057 - +0.2 764,058 + -0.2 764,079 + -0.2 764,083 + +0.0 764,083 + +0.1 764,083 + +0.3 764,083 + -0.4 764,083 + -0.5 764,124 + +0.3 764,132 + +0.4 764,132 + -0.6 764,132 + -1.2 764,132 + +0.2 764,134 + -1.0 764,137 + +0.2 764,137 + -0.6 764,137 + +0.7 764,138 - -0.9 764,138 - +0.4 764,141 + +1.3 764,141 + +1.1 764,141 + -0.0 764,189 + -1.1 764,275 + +2.4 764,311 - +1.1 764,340 + -2.1 764,340 + +1.1 764,359 + -1.9 764,359 + -0.5 764,360 - +1.2 764,360 - +0.4 764,371 - -0.9 764,400 + +0.1 764,400 + DDA3937_RS03485 0.10 -1.2 764,460 + DDA3937_RS03485 0.25 -0.6 764,482 + DDA3937_RS03485 0.31 +1.1 764,654 - DDA3937_RS03485 0.75 -1.4 764,654 - DDA3937_RS03485 0.75 -0.8 764,750 + -0.9 764,771 + -0.8 764,779 + -0.0 764,780 - -1.3 764,780 - -0.6 764,785 - -0.7 764,796 + -1.5 764,797 - -0.5 764,832 + +0.4 764,841 + -0.8 764,841 + -0.3 764,841 + -0.4 764,841 + -0.3 764,842 - -1.0 764,842 - -0.9 764,842 - -0.4 764,842 - +0.2 764,842 - +1.1 764,842 - -0.4 764,851 + -1.7 764,886 - -1.1 764,886 - -0.3 764,892 - -0.1 764,892 - -0.8 764,922 + -0.6 764,937 - +1.3 764,941 - -0.9 764,954 - -0.5 764,959 + -0.5 764,959 + -0.3 764,960 - -0.5 764,960 - +0.1 764,960 - -0.5 764,960 - -0.4 764,960 - -0.0 764,976 + +0.3 764,987 - -1.5 764,987 - -0.1 765,040 - +1.2 765,055 + -0.4 765,056 - +0.1 765,059 + -0.3 765,060 - -0.0 765,079 + -2.1 765,079 + -0.2 765,079 + -1.6 765,079 + +0.1 765,079 + -0.6 765,080 - -0.4 765,102 + +0.9 765,209 + -0.6 765,294 + +0.4 765,295 - -1.9 765,345 - +0.4 765,345 - -0.4 765,345 - -0.3 765,345 - -1.6 765,345 - -0.6 765,354 + +0.1 765,354 + +0.1 765,354 + -0.0 765,354 + -1.1 765,354 + +1.1 765,354 + -0.1 765,355 - -0.2 765,355 - +0.2 765,355 - -0.8 765,355 - +0.6 765,399 + -0.1 765,400 - -0.5 765,460 - +1.3 765,460 - -0.1 765,531 + -0.6 765,532 - -0.6
Or see this region's nucleotide sequence