Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS03445

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS03435 and DDA3937_RS03440 are separated by 10 nucleotidesDDA3937_RS03440 and DDA3937_RS03445 overlap by 11 nucleotidesDDA3937_RS03445 and DDA3937_RS03450 are separated by 214 nucleotidesDDA3937_RS03450 and DDA3937_RS03455 are separated by 257 nucleotides DDA3937_RS03435: DDA3937_RS03435 - phosphodiesterase, at 751,050 to 751,871 _RS03435 DDA3937_RS03440: DDA3937_RS03440 - carbohydrate ABC transporter permease, at 751,882 to 752,769 _RS03440 DDA3937_RS03445: DDA3937_RS03445 - sugar ABC transporter permease, at 752,759 to 753,631 _RS03445 DDA3937_RS03450: DDA3937_RS03450 - TOBE domain-containing protein, at 753,846 to 754,274 _RS03450 DDA3937_RS03455: DDA3937_RS03455 - kdo(2)-lipid IV(A) palmitoleoyltransferase, at 754,532 to 755,452 _RS03455 Position (kb) 752 753 754Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 751.766 kb on + strand, within DDA3937_RS03435at 751.766 kb on + strand, within DDA3937_RS03435at 751.766 kb on + strand, within DDA3937_RS03435at 751.767 kb on - strand, within DDA3937_RS03435at 751.767 kb on - strand, within DDA3937_RS03435at 751.817 kb on - strandat 751.888 kb on + strandat 751.889 kb on - strandat 751.936 kb on - strandat 752.088 kb on - strand, within DDA3937_RS03440at 752.088 kb on - strand, within DDA3937_RS03440at 752.102 kb on + strand, within DDA3937_RS03440at 752.103 kb on - strand, within DDA3937_RS03440at 752.106 kb on + strand, within DDA3937_RS03440at 752.106 kb on + strand, within DDA3937_RS03440at 752.106 kb on + strand, within DDA3937_RS03440at 752.106 kb on + strand, within DDA3937_RS03440at 752.106 kb on + strand, within DDA3937_RS03440at 752.106 kb on + strand, within DDA3937_RS03440at 752.106 kb on + strand, within DDA3937_RS03440at 752.106 kb on + strand, within DDA3937_RS03440at 752.107 kb on - strand, within DDA3937_RS03440at 752.107 kb on - strand, within DDA3937_RS03440at 752.107 kb on - strand, within DDA3937_RS03440at 752.167 kb on + strand, within DDA3937_RS03440at 752.168 kb on - strand, within DDA3937_RS03440at 752.276 kb on + strand, within DDA3937_RS03440at 752.277 kb on - strand, within DDA3937_RS03440at 752.301 kb on + strand, within DDA3937_RS03440at 752.432 kb on + strand, within DDA3937_RS03440at 752.432 kb on + strand, within DDA3937_RS03440at 752.433 kb on - strand, within DDA3937_RS03440at 752.433 kb on - strand, within DDA3937_RS03440at 752.501 kb on + strand, within DDA3937_RS03440at 752.502 kb on - strand, within DDA3937_RS03440at 752.509 kb on + strand, within DDA3937_RS03440at 752.544 kb on + strand, within DDA3937_RS03440at 752.631 kb on + strand, within DDA3937_RS03440at 752.769 kb on + strandat 752.820 kb on - strandat 752.895 kb on + strand, within DDA3937_RS03445at 752.895 kb on + strand, within DDA3937_RS03445at 752.895 kb on + strand, within DDA3937_RS03445at 752.895 kb on + strand, within DDA3937_RS03445at 752.895 kb on + strand, within DDA3937_RS03445at 752.896 kb on - strand, within DDA3937_RS03445at 752.896 kb on - strand, within DDA3937_RS03445at 752.898 kb on + strand, within DDA3937_RS03445at 752.898 kb on + strand, within DDA3937_RS03445at 752.898 kb on + strand, within DDA3937_RS03445at 752.898 kb on + strand, within DDA3937_RS03445at 752.898 kb on + strand, within DDA3937_RS03445at 752.899 kb on - strand, within DDA3937_RS03445at 752.899 kb on - strand, within DDA3937_RS03445at 752.899 kb on - strand, within DDA3937_RS03445at 752.973 kb on + strand, within DDA3937_RS03445at 752.973 kb on + strand, within DDA3937_RS03445at 752.973 kb on + strand, within DDA3937_RS03445at 752.973 kb on + strand, within DDA3937_RS03445at 752.974 kb on - strand, within DDA3937_RS03445at 752.987 kb on - strand, within DDA3937_RS03445at 752.989 kb on + strand, within DDA3937_RS03445at 752.989 kb on + strandat 752.990 kb on - strand, within DDA3937_RS03445at 753.068 kb on - strand, within DDA3937_RS03445at 753.129 kb on + strandat 753.129 kb on + strand, within DDA3937_RS03445at 753.129 kb on + strand, within DDA3937_RS03445at 753.129 kb on + strand, within DDA3937_RS03445at 753.129 kb on + strand, within DDA3937_RS03445at 753.129 kb on + strand, within DDA3937_RS03445at 753.130 kb on - strand, within DDA3937_RS03445at 753.130 kb on - strand, within DDA3937_RS03445at 753.130 kb on - strand, within DDA3937_RS03445at 753.130 kb on - strand, within DDA3937_RS03445at 753.130 kb on - strand, within DDA3937_RS03445at 753.130 kb on - strand, within DDA3937_RS03445at 753.130 kb on - strand, within DDA3937_RS03445at 753.130 kb on - strand, within DDA3937_RS03445at 753.130 kb on - strand, within DDA3937_RS03445at 753.130 kb on - strand, within DDA3937_RS03445at 753.130 kb on - strand, within DDA3937_RS03445at 753.132 kb on + strand, within DDA3937_RS03445at 753.149 kb on + strand, within DDA3937_RS03445at 753.198 kb on + strand, within DDA3937_RS03445at 753.198 kb on + strand, within DDA3937_RS03445at 753.198 kb on + strand, within DDA3937_RS03445at 753.199 kb on - strand, within DDA3937_RS03445at 753.199 kb on - strand, within DDA3937_RS03445at 753.199 kb on - strand, within DDA3937_RS03445at 753.199 kb on - strandat 753.199 kb on - strand, within DDA3937_RS03445at 753.199 kb on - strand, within DDA3937_RS03445at 753.234 kb on + strand, within DDA3937_RS03445at 753.234 kb on + strand, within DDA3937_RS03445at 753.234 kb on + strandat 753.235 kb on - strand, within DDA3937_RS03445at 753.235 kb on - strand, within DDA3937_RS03445at 753.238 kb on - strand, within DDA3937_RS03445at 753.238 kb on - strand, within DDA3937_RS03445at 753.238 kb on - strand, within DDA3937_RS03445at 753.269 kb on - strand, within DDA3937_RS03445at 753.419 kb on - strand, within DDA3937_RS03445at 753.419 kb on - strand, within DDA3937_RS03445at 753.420 kb on + strand, within DDA3937_RS03445at 753.420 kb on + strand, within DDA3937_RS03445at 753.420 kb on + strand, within DDA3937_RS03445at 753.420 kb on + strand, within DDA3937_RS03445at 753.420 kb on + strand, within DDA3937_RS03445at 753.421 kb on - strand, within DDA3937_RS03445at 753.421 kb on - strand, within DDA3937_RS03445at 753.421 kb on - strand, within DDA3937_RS03445at 753.431 kb on - strand, within DDA3937_RS03445at 753.518 kb on - strand, within DDA3937_RS03445at 753.540 kb on + strand, within DDA3937_RS03445at 753.540 kb on + strand, within DDA3937_RS03445at 753.541 kb on - strand, within DDA3937_RS03445at 753.555 kb on - strandat 753.641 kb on + strandat 753.642 kb on - strandat 753.677 kb on + strandat 753.677 kb on + strandat 753.677 kb on + strandat 753.677 kb on + strandat 753.677 kb on + strandat 753.678 kb on - strandat 753.678 kb on - strandat 753.678 kb on - strandat 753.678 kb on - strandat 753.693 kb on + strandat 753.694 kb on - strandat 753.743 kb on + strandat 753.748 kb on + strandat 753.748 kb on + strandat 753.770 kb on + strandat 753.813 kb on + strandat 753.814 kb on - strandat 753.819 kb on + strandat 753.820 kb on - strandat 753.820 kb on - strandat 753.824 kb on - strandat 753.832 kb on - strandat 753.845 kb on + strandat 753.845 kb on + strandat 753.846 kb on - strandat 753.846 kb on - strandat 753.925 kb on + strand, within DDA3937_RS03450at 753.925 kb on + strand, within DDA3937_RS03450at 753.926 kb on - strand, within DDA3937_RS03450at 754.139 kb on + strand, within DDA3937_RS03450at 754.139 kb on + strand, within DDA3937_RS03450at 754.139 kb on + strand, within DDA3937_RS03450at 754.140 kb on - strand, within DDA3937_RS03450at 754.140 kb on - strand, within DDA3937_RS03450at 754.140 kb on - strand, within DDA3937_RS03450at 754.239 kb on - strandat 754.314 kb on + strandat 754.402 kb on - strandat 754.402 kb on - strandat 754.402 kb on - strandat 754.402 kb on - strandat 754.486 kb on + strandat 754.486 kb on + strandat 754.486 kb on + strandat 754.487 kb on - strandat 754.487 kb on - strandat 754.487 kb on - strandat 754.487 kb on - strandat 754.487 kb on - strandat 754.487 kb on - strandat 754.524 kb on + strandat 754.524 kb on + strandat 754.530 kb on + strandat 754.531 kb on - strandat 754.531 kb on - strandat 754.550 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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751,766 + DDA3937_RS03435 0.87 -0.3
751,766 + DDA3937_RS03435 0.87 -3.4
751,766 + DDA3937_RS03435 0.87 -0.2
751,767 - DDA3937_RS03435 0.87 -0.5
751,767 - DDA3937_RS03435 0.87 -0.2
751,817 - +0.5
751,888 + -0.6
751,889 - +0.7
751,936 - -1.4
752,088 - DDA3937_RS03440 0.23 -0.3
752,088 - DDA3937_RS03440 0.23 +0.4
752,102 + DDA3937_RS03440 0.25 -0.9
752,103 - DDA3937_RS03440 0.25 -0.2
752,106 + DDA3937_RS03440 0.25 -0.3
752,106 + DDA3937_RS03440 0.25 +0.1
752,106 + DDA3937_RS03440 0.25 -0.2
752,106 + DDA3937_RS03440 0.25 -0.2
752,106 + DDA3937_RS03440 0.25 +0.1
752,106 + DDA3937_RS03440 0.25 -0.2
752,106 + DDA3937_RS03440 0.25 -0.1
752,106 + DDA3937_RS03440 0.25 -0.5
752,107 - DDA3937_RS03440 0.25 +0.4
752,107 - DDA3937_RS03440 0.25 -0.3
752,107 - DDA3937_RS03440 0.25 -0.0
752,167 + DDA3937_RS03440 0.32 -1.7
752,168 - DDA3937_RS03440 0.32 -0.3
752,276 + DDA3937_RS03440 0.44 -1.2
752,277 - DDA3937_RS03440 0.44 -0.3
752,301 + DDA3937_RS03440 0.47 +0.2
752,432 + DDA3937_RS03440 0.62 -0.5
752,432 + DDA3937_RS03440 0.62 -0.3
752,433 - DDA3937_RS03440 0.62 -0.8
752,433 - DDA3937_RS03440 0.62 -1.0
752,501 + DDA3937_RS03440 0.70 +0.9
752,502 - DDA3937_RS03440 0.70 +0.1
752,509 + DDA3937_RS03440 0.71 +0.2
752,544 + DDA3937_RS03440 0.75 -0.4
752,631 + DDA3937_RS03440 0.84 -0.7
752,769 + +0.2
752,820 - -0.1
752,895 + DDA3937_RS03445 0.16 -1.6
752,895 + DDA3937_RS03445 0.16 +0.4
752,895 + DDA3937_RS03445 0.16 -0.2
752,895 + DDA3937_RS03445 0.16 -0.1
752,895 + DDA3937_RS03445 0.16 +0.6
752,896 - DDA3937_RS03445 0.16 +0.5
752,896 - DDA3937_RS03445 0.16 -1.5
752,898 + DDA3937_RS03445 0.16 -0.6
752,898 + DDA3937_RS03445 0.16 -0.7
752,898 + DDA3937_RS03445 0.16 -0.5
752,898 + DDA3937_RS03445 0.16 -0.1
752,898 + DDA3937_RS03445 0.16 +0.2
752,899 - DDA3937_RS03445 0.16 +0.3
752,899 - DDA3937_RS03445 0.16 +0.8
752,899 - DDA3937_RS03445 0.16 -0.9
752,973 + DDA3937_RS03445 0.25 +0.4
752,973 + DDA3937_RS03445 0.25 -0.4
752,973 + DDA3937_RS03445 0.25 -0.3
752,973 + DDA3937_RS03445 0.25 -0.4
752,974 - DDA3937_RS03445 0.25 -0.9
752,987 - DDA3937_RS03445 0.26 -1.4
752,989 + DDA3937_RS03445 0.26 -0.0
752,989 + -0.5
752,990 - DDA3937_RS03445 0.26 -0.6
753,068 - DDA3937_RS03445 0.35 -0.8
753,129 + -0.9
753,129 + DDA3937_RS03445 0.42 +0.1
753,129 + DDA3937_RS03445 0.42 -0.4
753,129 + DDA3937_RS03445 0.42 -0.2
753,129 + DDA3937_RS03445 0.42 +1.3
753,129 + DDA3937_RS03445 0.42 -0.0
753,130 - DDA3937_RS03445 0.42 -0.7
753,130 - DDA3937_RS03445 0.42 -0.8
753,130 - DDA3937_RS03445 0.42 -0.4
753,130 - DDA3937_RS03445 0.42 +0.1
753,130 - DDA3937_RS03445 0.42 -0.0
753,130 - DDA3937_RS03445 0.42 -0.9
753,130 - DDA3937_RS03445 0.42 -0.7
753,130 - DDA3937_RS03445 0.42 +0.2
753,130 - DDA3937_RS03445 0.42 -0.3
753,130 - DDA3937_RS03445 0.42 +0.2
753,130 - DDA3937_RS03445 0.42 +0.4
753,132 + DDA3937_RS03445 0.43 -0.5
753,149 + DDA3937_RS03445 0.45 -0.6
753,198 + DDA3937_RS03445 0.50 +0.5
753,198 + DDA3937_RS03445 0.50 -2.2
753,198 + DDA3937_RS03445 0.50 -0.3
753,199 - DDA3937_RS03445 0.50 -0.8
753,199 - DDA3937_RS03445 0.50 +2.1
753,199 - DDA3937_RS03445 0.50 -1.0
753,199 - +1.6
753,199 - DDA3937_RS03445 0.50 +1.4
753,199 - DDA3937_RS03445 0.50 -0.8
753,234 + DDA3937_RS03445 0.54 -0.3
753,234 + DDA3937_RS03445 0.54 -0.4
753,234 + +1.1
753,235 - DDA3937_RS03445 0.55 -0.2
753,235 - DDA3937_RS03445 0.55 -1.2
753,238 - DDA3937_RS03445 0.55 +0.4
753,238 - DDA3937_RS03445 0.55 -1.0
753,238 - DDA3937_RS03445 0.55 -2.1
753,269 - DDA3937_RS03445 0.58 -0.4
753,419 - DDA3937_RS03445 0.76 -0.6
753,419 - DDA3937_RS03445 0.76 +0.2
753,420 + DDA3937_RS03445 0.76 -0.3
753,420 + DDA3937_RS03445 0.76 -0.6
753,420 + DDA3937_RS03445 0.76 +0.6
753,420 + DDA3937_RS03445 0.76 -1.1
753,420 + DDA3937_RS03445 0.76 +0.1
753,421 - DDA3937_RS03445 0.76 -0.7
753,421 - DDA3937_RS03445 0.76 -0.9
753,421 - DDA3937_RS03445 0.76 -0.0
753,431 - DDA3937_RS03445 0.77 -0.1
753,518 - DDA3937_RS03445 0.87 -0.4
753,540 + DDA3937_RS03445 0.89 -0.6
753,540 + DDA3937_RS03445 0.89 +1.5
753,541 - DDA3937_RS03445 0.90 -1.3
753,555 - +0.7
753,641 + +0.0
753,642 - -1.5
753,677 + +0.2
753,677 + -1.2
753,677 + -1.0
753,677 + -0.4
753,677 + -0.1
753,678 - -0.0
753,678 - +0.6
753,678 - -0.5
753,678 - -0.2
753,693 + -0.4
753,694 - -0.4
753,743 + -0.5
753,748 + -0.3
753,748 + -1.6
753,770 + -1.5
753,813 + -0.9
753,814 - -1.2
753,819 + -1.0
753,820 - +1.1
753,820 - +1.1
753,824 - -0.7
753,832 - +0.8
753,845 + +0.4
753,845 + +0.9
753,846 - +0.1
753,846 - -0.9
753,925 + DDA3937_RS03450 0.18 +2.4
753,925 + DDA3937_RS03450 0.18 -0.6
753,926 - DDA3937_RS03450 0.19 -0.3
754,139 + DDA3937_RS03450 0.68 -1.2
754,139 + DDA3937_RS03450 0.68 +0.6
754,139 + DDA3937_RS03450 0.68 +0.4
754,140 - DDA3937_RS03450 0.69 -0.3
754,140 - DDA3937_RS03450 0.69 +0.1
754,140 - DDA3937_RS03450 0.69 +1.5
754,239 - -0.3
754,314 + +0.3
754,402 - +1.0
754,402 - -0.8
754,402 - -0.0
754,402 - -1.2
754,486 + -0.1
754,486 + -1.5
754,486 + -0.1
754,487 - +0.1
754,487 - -0.1
754,487 - -0.5
754,487 - -0.3
754,487 - -0.1
754,487 - -1.7
754,524 + +0.1
754,524 + +0.7
754,530 + -0.7
754,531 - +0.0
754,531 - +2.3
754,550 - +0.0

Or see this region's nucleotide sequence