Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS03330 and DDA3937_RS03335 are separated by 10 nucleotides DDA3937_RS03335 and DDA3937_RS03340 are separated by 150 nucleotides DDA3937_RS03340 and DDA3937_RS03345 are separated by 399 nucleotides
DDA3937_RS03330: DDA3937_RS03330 - GMC family oxidoreductase, at 728,009 to 729,604
_RS03330
DDA3937_RS03335: DDA3937_RS03335 - hypothetical protein, at 729,615 to 730,079
_RS03335
DDA3937_RS03340: DDA3937_RS03340 - phosphoesterase, at 730,230 to 731,657
_RS03340
DDA3937_RS03345: DDA3937_RS03345 - helix-turn-helix transcriptional regulator, at 732,057 to 732,812
_RS03345
Position (kb) 730
731
732 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 729.284 kb on - strand, within DDA3937_RS03330 at 729.327 kb on + strand, within DDA3937_RS03330 at 729.327 kb on + strand, within DDA3937_RS03330 at 729.327 kb on + strand, within DDA3937_RS03330 at 729.328 kb on - strand, within DDA3937_RS03330 at 729.328 kb on - strand, within DDA3937_RS03330 at 729.420 kb on + strand, within DDA3937_RS03330 at 729.421 kb on - strand, within DDA3937_RS03330 at 729.421 kb on - strand, within DDA3937_RS03330 at 729.421 kb on - strand, within DDA3937_RS03330 at 729.421 kb on - strand, within DDA3937_RS03330 at 729.433 kb on - strand, within DDA3937_RS03330 at 729.456 kb on + strand at 729.457 kb on - strand at 729.474 kb on + strand at 729.474 kb on + strand at 729.474 kb on + strand at 729.475 kb on - strand at 729.475 kb on - strand at 729.475 kb on - strand at 729.534 kb on + strand at 729.534 kb on + strand at 729.584 kb on - strand at 729.584 kb on - strand at 729.587 kb on + strand at 729.588 kb on - strand at 729.593 kb on - strand at 729.593 kb on - strand at 729.668 kb on - strand, within DDA3937_RS03335 at 729.676 kb on + strand, within DDA3937_RS03335 at 729.677 kb on - strand, within DDA3937_RS03335 at 729.717 kb on + strand, within DDA3937_RS03335 at 729.717 kb on + strand, within DDA3937_RS03335 at 729.759 kb on - strand, within DDA3937_RS03335 at 729.820 kb on + strand, within DDA3937_RS03335 at 729.820 kb on + strand, within DDA3937_RS03335 at 729.821 kb on - strand, within DDA3937_RS03335 at 729.821 kb on - strand, within DDA3937_RS03335 at 729.881 kb on - strand, within DDA3937_RS03335 at 729.881 kb on - strand, within DDA3937_RS03335 at 729.883 kb on + strand, within DDA3937_RS03335 at 729.883 kb on + strand, within DDA3937_RS03335 at 729.884 kb on - strand, within DDA3937_RS03335 at 729.892 kb on + strand, within DDA3937_RS03335 at 729.892 kb on + strand, within DDA3937_RS03335 at 729.893 kb on - strand, within DDA3937_RS03335 at 729.906 kb on - strand, within DDA3937_RS03335 at 729.908 kb on + strand at 729.909 kb on - strand, within DDA3937_RS03335 at 729.931 kb on + strand, within DDA3937_RS03335 at 729.932 kb on - strand, within DDA3937_RS03335 at 729.932 kb on - strand, within DDA3937_RS03335 at 729.932 kb on - strand, within DDA3937_RS03335 at 729.946 kb on + strand, within DDA3937_RS03335 at 729.947 kb on - strand, within DDA3937_RS03335 at 730.019 kb on + strand, within DDA3937_RS03335 at 730.019 kb on + strand, within DDA3937_RS03335 at 730.019 kb on + strand, within DDA3937_RS03335 at 730.020 kb on - strand, within DDA3937_RS03335 at 730.020 kb on - strand, within DDA3937_RS03335 at 730.020 kb on - strand, within DDA3937_RS03335 at 730.020 kb on - strand, within DDA3937_RS03335 at 730.026 kb on - strand, within DDA3937_RS03335 at 730.049 kb on + strand at 730.054 kb on + strand at 730.055 kb on - strand at 730.055 kb on - strand at 730.055 kb on - strand at 730.055 kb on - strand at 730.055 kb on - strand at 730.055 kb on - strand at 730.079 kb on + strand at 730.079 kb on + strand at 730.079 kb on + strand at 730.079 kb on + strand at 730.079 kb on + strand at 730.079 kb on + strand at 730.079 kb on + strand at 730.079 kb on + strand at 730.079 kb on + strand at 730.079 kb on + strand at 730.080 kb on - strand at 730.080 kb on - strand at 730.080 kb on - strand at 730.080 kb on - strand at 730.080 kb on - strand at 730.080 kb on - strand at 730.193 kb on + strand at 730.193 kb on + strand at 730.193 kb on + strand at 730.193 kb on + strand at 730.193 kb on + strand at 730.194 kb on - strand at 730.194 kb on - strand at 730.270 kb on + strand at 730.271 kb on - strand at 730.271 kb on - strand at 730.271 kb on - strand at 730.271 kb on - strand at 730.476 kb on + strand, within DDA3937_RS03340 at 730.476 kb on + strand, within DDA3937_RS03340 at 730.476 kb on + strand, within DDA3937_RS03340 at 730.476 kb on + strand, within DDA3937_RS03340 at 730.476 kb on + strand, within DDA3937_RS03340 at 730.477 kb on - strand, within DDA3937_RS03340 at 730.477 kb on - strand, within DDA3937_RS03340 at 730.477 kb on - strand, within DDA3937_RS03340 at 730.599 kb on + strand, within DDA3937_RS03340 at 730.676 kb on - strand, within DDA3937_RS03340 at 730.753 kb on + strand at 730.753 kb on + strand, within DDA3937_RS03340 at 730.753 kb on + strand, within DDA3937_RS03340 at 730.753 kb on + strand, within DDA3937_RS03340 at 730.754 kb on - strand, within DDA3937_RS03340 at 730.754 kb on - strand, within DDA3937_RS03340 at 730.757 kb on + strand, within DDA3937_RS03340 at 730.757 kb on + strand, within DDA3937_RS03340 at 730.758 kb on - strand, within DDA3937_RS03340 at 730.804 kb on + strand, within DDA3937_RS03340 at 730.804 kb on + strand, within DDA3937_RS03340 at 730.804 kb on + strand, within DDA3937_RS03340 at 730.805 kb on - strand at 730.805 kb on - strand, within DDA3937_RS03340 at 730.805 kb on - strand, within DDA3937_RS03340 at 730.807 kb on + strand, within DDA3937_RS03340 at 730.807 kb on + strand, within DDA3937_RS03340 at 730.807 kb on + strand, within DDA3937_RS03340 at 730.807 kb on + strand, within DDA3937_RS03340 at 730.900 kb on + strand, within DDA3937_RS03340 at 730.901 kb on - strand, within DDA3937_RS03340 at 730.901 kb on - strand, within DDA3937_RS03340 at 730.901 kb on - strand at 730.901 kb on - strand, within DDA3937_RS03340 at 730.901 kb on - strand, within DDA3937_RS03340 at 730.901 kb on - strand, within DDA3937_RS03340 at 730.962 kb on - strand, within DDA3937_RS03340 at 730.962 kb on - strand, within DDA3937_RS03340 at 730.962 kb on - strand, within DDA3937_RS03340 at 731.018 kb on - strand, within DDA3937_RS03340 at 731.018 kb on - strand, within DDA3937_RS03340 at 731.018 kb on - strand, within DDA3937_RS03340 at 731.023 kb on + strand, within DDA3937_RS03340 at 731.023 kb on + strand, within DDA3937_RS03340 at 731.023 kb on + strand, within DDA3937_RS03340 at 731.024 kb on - strand, within DDA3937_RS03340 at 731.024 kb on - strand, within DDA3937_RS03340 at 731.080 kb on + strand, within DDA3937_RS03340 at 731.080 kb on + strand, within DDA3937_RS03340 at 731.080 kb on + strand, within DDA3937_RS03340 at 731.081 kb on - strand, within DDA3937_RS03340 at 731.081 kb on - strand, within DDA3937_RS03340 at 731.081 kb on - strand, within DDA3937_RS03340 at 731.081 kb on - strand, within DDA3937_RS03340 at 731.192 kb on - strand, within DDA3937_RS03340 at 731.235 kb on - strand, within DDA3937_RS03340 at 731.249 kb on + strand, within DDA3937_RS03340 at 731.250 kb on - strand, within DDA3937_RS03340 at 731.250 kb on - strand, within DDA3937_RS03340 at 731.315 kb on - strand, within DDA3937_RS03340 at 731.320 kb on + strand, within DDA3937_RS03340 at 731.321 kb on - strand, within DDA3937_RS03340 at 731.404 kb on + strand, within DDA3937_RS03340 at 731.408 kb on - strand, within DDA3937_RS03340 at 731.408 kb on - strand, within DDA3937_RS03340 at 731.435 kb on + strand, within DDA3937_RS03340 at 731.436 kb on - strand, within DDA3937_RS03340 at 731.440 kb on + strand, within DDA3937_RS03340 at 731.472 kb on + strand, within DDA3937_RS03340 at 731.473 kb on - strand, within DDA3937_RS03340 at 731.586 kb on - strand at 731.625 kb on - strand at 731.652 kb on - strand at 731.764 kb on + strand at 731.764 kb on + strand at 731.765 kb on - strand at 731.765 kb on - strand at 731.765 kb on - strand at 731.797 kb on + strand at 731.797 kb on + strand at 731.798 kb on - strand at 731.798 kb on - strand at 731.845 kb on - strand at 731.853 kb on + strand at 732.022 kb on + strand at 732.066 kb on + strand at 732.071 kb on + strand at 732.071 kb on + strand at 732.071 kb on + strand at 732.072 kb on - strand at 732.072 kb on - strand at 732.225 kb on + strand, within DDA3937_RS03345 at 732.225 kb on + strand, within DDA3937_RS03345 at 732.226 kb on - strand, within DDA3937_RS03345 at 732.226 kb on - strand, within DDA3937_RS03345 at 732.226 kb on - strand, within DDA3937_RS03345 at 732.226 kb on - strand, within DDA3937_RS03345 at 732.227 kb on + strand, within DDA3937_RS03345 at 732.228 kb on - strand, within DDA3937_RS03345 at 732.288 kb on + strand, within DDA3937_RS03345 at 732.289 kb on - strand, within DDA3937_RS03345 at 732.289 kb on - strand, within DDA3937_RS03345 at 732.289 kb on - strand, within DDA3937_RS03345 at 732.289 kb on - strand, within DDA3937_RS03345 at 732.315 kb on + strand, within DDA3937_RS03345 at 732.516 kb on - strand, within DDA3937_RS03345 at 732.615 kb on - strand, within DDA3937_RS03345 at 732.629 kb on + strand, within DDA3937_RS03345 at 732.629 kb on + strand, within DDA3937_RS03345 at 732.629 kb on + strand, within DDA3937_RS03345 at 732.630 kb on - strand, within DDA3937_RS03345
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 729,284 - DDA3937_RS03330 0.80 +0.0 729,327 + DDA3937_RS03330 0.83 -3.1 729,327 + DDA3937_RS03330 0.83 +2.1 729,327 + DDA3937_RS03330 0.83 -1.8 729,328 - DDA3937_RS03330 0.83 +0.1 729,328 - DDA3937_RS03330 0.83 -0.9 729,420 + DDA3937_RS03330 0.88 +1.1 729,421 - DDA3937_RS03330 0.88 -0.1 729,421 - DDA3937_RS03330 0.88 -3.0 729,421 - DDA3937_RS03330 0.88 -1.3 729,421 - DDA3937_RS03330 0.88 -0.1 729,433 - DDA3937_RS03330 0.89 +1.7 729,456 + +0.1 729,457 - +1.4 729,474 + -0.4 729,474 + +0.2 729,474 + -2.9 729,475 - -1.5 729,475 - -0.1 729,475 - -0.3 729,534 + +0.3 729,534 + -0.3 729,584 - -0.5 729,584 - -0.6 729,587 + -0.4 729,588 - -2.1 729,593 - -0.2 729,593 - +2.1 729,668 - DDA3937_RS03335 0.11 -0.2 729,676 + DDA3937_RS03335 0.13 -0.6 729,677 - DDA3937_RS03335 0.13 -0.5 729,717 + DDA3937_RS03335 0.22 -0.5 729,717 + DDA3937_RS03335 0.22 -1.9 729,759 - DDA3937_RS03335 0.31 +0.7 729,820 + DDA3937_RS03335 0.44 -0.9 729,820 + DDA3937_RS03335 0.44 +0.1 729,821 - DDA3937_RS03335 0.44 +0.8 729,821 - DDA3937_RS03335 0.44 -0.8 729,881 - DDA3937_RS03335 0.57 -0.1 729,881 - DDA3937_RS03335 0.57 +0.4 729,883 + DDA3937_RS03335 0.58 -1.6 729,883 + DDA3937_RS03335 0.58 -0.8 729,884 - DDA3937_RS03335 0.58 -1.3 729,892 + DDA3937_RS03335 0.60 -0.2 729,892 + DDA3937_RS03335 0.60 -2.1 729,893 - DDA3937_RS03335 0.60 -1.1 729,906 - DDA3937_RS03335 0.63 -0.6 729,908 + +1.7 729,909 - DDA3937_RS03335 0.63 +0.2 729,931 + DDA3937_RS03335 0.68 +0.3 729,932 - DDA3937_RS03335 0.68 +0.3 729,932 - DDA3937_RS03335 0.68 +0.5 729,932 - DDA3937_RS03335 0.68 +0.6 729,946 + DDA3937_RS03335 0.71 +0.1 729,947 - DDA3937_RS03335 0.71 -0.9 730,019 + DDA3937_RS03335 0.87 -0.5 730,019 + DDA3937_RS03335 0.87 -1.1 730,019 + DDA3937_RS03335 0.87 +0.3 730,020 - DDA3937_RS03335 0.87 -0.1 730,020 - DDA3937_RS03335 0.87 +0.3 730,020 - DDA3937_RS03335 0.87 -0.4 730,020 - DDA3937_RS03335 0.87 -0.0 730,026 - DDA3937_RS03335 0.88 +1.1 730,049 + +0.9 730,054 + +0.0 730,055 - -0.5 730,055 - -2.1 730,055 - -0.6 730,055 - -1.0 730,055 - -0.9 730,055 - -2.1 730,079 + +2.4 730,079 + -0.3 730,079 + -1.0 730,079 + +0.3 730,079 + -0.3 730,079 + -0.5 730,079 + -0.7 730,079 + -0.2 730,079 + -0.9 730,079 + -0.4 730,080 - -0.3 730,080 - -0.8 730,080 - -1.5 730,080 - -0.0 730,080 - -0.9 730,080 - +0.4 730,193 + -0.3 730,193 + -0.9 730,193 + +0.1 730,193 + +0.4 730,193 + +1.1 730,194 - +1.1 730,194 - -0.8 730,270 + -1.1 730,271 - +0.1 730,271 - -0.1 730,271 - +2.1 730,271 - -1.9 730,476 + DDA3937_RS03340 0.17 +0.4 730,476 + DDA3937_RS03340 0.17 +0.2 730,476 + DDA3937_RS03340 0.17 -0.6 730,476 + DDA3937_RS03340 0.17 -0.5 730,476 + DDA3937_RS03340 0.17 -0.4 730,477 - DDA3937_RS03340 0.17 +0.4 730,477 - DDA3937_RS03340 0.17 +0.3 730,477 - DDA3937_RS03340 0.17 +1.0 730,599 + DDA3937_RS03340 0.26 -2.1 730,676 - DDA3937_RS03340 0.31 +0.3 730,753 + -0.1 730,753 + DDA3937_RS03340 0.37 -0.9 730,753 + DDA3937_RS03340 0.37 +1.2 730,753 + DDA3937_RS03340 0.37 +0.4 730,754 - DDA3937_RS03340 0.37 -0.5 730,754 - DDA3937_RS03340 0.37 +0.4 730,757 + DDA3937_RS03340 0.37 +0.4 730,757 + DDA3937_RS03340 0.37 -1.3 730,758 - DDA3937_RS03340 0.37 +2.1 730,804 + DDA3937_RS03340 0.40 -0.4 730,804 + DDA3937_RS03340 0.40 -1.5 730,804 + DDA3937_RS03340 0.40 -0.5 730,805 - +0.1 730,805 - DDA3937_RS03340 0.40 -0.8 730,805 - DDA3937_RS03340 0.40 -0.0 730,807 + DDA3937_RS03340 0.40 -0.1 730,807 + DDA3937_RS03340 0.40 -1.2 730,807 + DDA3937_RS03340 0.40 +0.2 730,807 + DDA3937_RS03340 0.40 -2.3 730,900 + DDA3937_RS03340 0.47 +0.1 730,901 - DDA3937_RS03340 0.47 +1.7 730,901 - DDA3937_RS03340 0.47 +0.7 730,901 - +1.1 730,901 - DDA3937_RS03340 0.47 +0.5 730,901 - DDA3937_RS03340 0.47 -0.4 730,901 - DDA3937_RS03340 0.47 -0.4 730,962 - DDA3937_RS03340 0.51 -0.4 730,962 - DDA3937_RS03340 0.51 -0.1 730,962 - DDA3937_RS03340 0.51 -0.1 731,018 - DDA3937_RS03340 0.55 +0.5 731,018 - DDA3937_RS03340 0.55 -0.8 731,018 - DDA3937_RS03340 0.55 +0.2 731,023 + DDA3937_RS03340 0.56 -0.4 731,023 + DDA3937_RS03340 0.56 -0.2 731,023 + DDA3937_RS03340 0.56 +0.1 731,024 - DDA3937_RS03340 0.56 -0.4 731,024 - DDA3937_RS03340 0.56 +0.3 731,080 + DDA3937_RS03340 0.60 +0.5 731,080 + DDA3937_RS03340 0.60 -0.8 731,080 + DDA3937_RS03340 0.60 -0.5 731,081 - DDA3937_RS03340 0.60 +1.1 731,081 - DDA3937_RS03340 0.60 +0.5 731,081 - DDA3937_RS03340 0.60 -0.9 731,081 - DDA3937_RS03340 0.60 -0.5 731,192 - DDA3937_RS03340 0.67 -1.3 731,235 - DDA3937_RS03340 0.70 +0.7 731,249 + DDA3937_RS03340 0.71 -0.4 731,250 - DDA3937_RS03340 0.71 +0.7 731,250 - DDA3937_RS03340 0.71 -1.7 731,315 - DDA3937_RS03340 0.76 -0.0 731,320 + DDA3937_RS03340 0.76 +0.1 731,321 - DDA3937_RS03340 0.76 -0.3 731,404 + DDA3937_RS03340 0.82 -0.1 731,408 - DDA3937_RS03340 0.82 -1.1 731,408 - DDA3937_RS03340 0.82 -1.5 731,435 + DDA3937_RS03340 0.84 -0.1 731,436 - DDA3937_RS03340 0.84 +0.4 731,440 + DDA3937_RS03340 0.85 +1.1 731,472 + DDA3937_RS03340 0.87 -0.7 731,473 - DDA3937_RS03340 0.87 +0.5 731,586 - -1.0 731,625 - +0.1 731,652 - -0.5 731,764 + +0.2 731,764 + -0.7 731,765 - -0.5 731,765 - -1.8 731,765 - -1.1 731,797 + -0.1 731,797 + -0.0 731,798 - -0.5 731,798 - -1.7 731,845 - -1.4 731,853 + -0.3 732,022 + -0.1 732,066 + -1.4 732,071 + -1.4 732,071 + -0.6 732,071 + -0.0 732,072 - -0.5 732,072 - -1.0 732,225 + DDA3937_RS03345 0.22 -0.1 732,225 + DDA3937_RS03345 0.22 +0.0 732,226 - DDA3937_RS03345 0.22 -1.0 732,226 - DDA3937_RS03345 0.22 +0.3 732,226 - DDA3937_RS03345 0.22 -0.9 732,226 - DDA3937_RS03345 0.22 -0.7 732,227 + DDA3937_RS03345 0.22 -1.1 732,228 - DDA3937_RS03345 0.23 +0.3 732,288 + DDA3937_RS03345 0.31 +0.1 732,289 - DDA3937_RS03345 0.31 +0.5 732,289 - DDA3937_RS03345 0.31 +1.4 732,289 - DDA3937_RS03345 0.31 -1.1 732,289 - DDA3937_RS03345 0.31 -1.7 732,315 + DDA3937_RS03345 0.34 -0.1 732,516 - DDA3937_RS03345 0.61 -0.4 732,615 - DDA3937_RS03345 0.74 -0.1 732,629 + DDA3937_RS03345 0.76 -0.4 732,629 + DDA3937_RS03345 0.76 +0.9 732,629 + DDA3937_RS03345 0.76 +0.4 732,630 - DDA3937_RS03345 0.76 +0.3
Or see this region's nucleotide sequence