Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS03255 and DDA3937_RS03260 are separated by 188 nucleotides DDA3937_RS03260 and DDA3937_RS03265 are separated by 69 nucleotides DDA3937_RS03265 and DDA3937_RS03270 are separated by 208 nucleotides DDA3937_RS03270 and DDA3937_RS03275 are separated by 72 nucleotides
DDA3937_RS03255: DDA3937_RS03255 - aminomethyl-transferring glycine dehydrogenase, at 710,961 to 713,834
_RS03255
DDA3937_RS03260: DDA3937_RS03260 - LysE family translocator, at 714,023 to 714,673
_RS03260
DDA3937_RS03265: DDA3937_RS03265 - HD domain-containing protein, at 714,743 to 715,351
_RS03265
DDA3937_RS03270: DDA3937_RS03270 - hemolysin III family protein, at 715,560 to 716,210
_RS03270
DDA3937_RS03275: DDA3937_RS03275 - tRNA-modifying protein YgfZ, at 716,283 to 717,263
_RS03275
Position (kb) 714
715
716 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 713.749 kb on - strand at 713.792 kb on + strand at 713.793 kb on - strand at 713.793 kb on - strand at 713.793 kb on - strand at 713.827 kb on - strand at 713.827 kb on - strand at 713.832 kb on + strand at 713.832 kb on + strand at 713.833 kb on - strand at 713.833 kb on - strand at 713.845 kb on + strand at 713.846 kb on - strand at 713.846 kb on - strand at 713.857 kb on - strand at 713.857 kb on - strand at 713.951 kb on + strand at 713.951 kb on + strand at 713.951 kb on + strand at 713.951 kb on + strand at 713.951 kb on + strand at 713.951 kb on + strand at 713.952 kb on - strand at 713.952 kb on - strand at 714.027 kb on + strand at 714.040 kb on + strand at 714.041 kb on - strand at 714.041 kb on - strand at 714.053 kb on - strand at 714.106 kb on + strand, within DDA3937_RS03260 at 714.107 kb on - strand, within DDA3937_RS03260 at 714.242 kb on - strand, within DDA3937_RS03260 at 714.270 kb on - strand, within DDA3937_RS03260 at 714.270 kb on - strand, within DDA3937_RS03260 at 714.278 kb on + strand, within DDA3937_RS03260 at 714.279 kb on - strand, within DDA3937_RS03260 at 714.279 kb on - strand, within DDA3937_RS03260 at 714.279 kb on - strand, within DDA3937_RS03260 at 714.279 kb on - strand, within DDA3937_RS03260 at 714.280 kb on + strand, within DDA3937_RS03260 at 714.408 kb on + strand, within DDA3937_RS03260 at 714.408 kb on + strand, within DDA3937_RS03260 at 714.409 kb on - strand at 714.409 kb on - strand, within DDA3937_RS03260 at 714.409 kb on - strand, within DDA3937_RS03260 at 714.610 kb on + strand at 714.610 kb on + strand at 714.610 kb on + strand at 714.611 kb on - strand at 714.631 kb on + strand at 714.631 kb on + strand at 714.632 kb on - strand at 714.745 kb on - strand at 714.792 kb on + strand at 714.793 kb on - strand at 714.814 kb on + strand, within DDA3937_RS03265 at 714.814 kb on + strand, within DDA3937_RS03265 at 714.824 kb on - strand, within DDA3937_RS03265 at 714.859 kb on + strand, within DDA3937_RS03265 at 714.869 kb on + strand, within DDA3937_RS03265 at 714.966 kb on + strand, within DDA3937_RS03265 at 714.967 kb on - strand, within DDA3937_RS03265 at 715.080 kb on + strand, within DDA3937_RS03265 at 715.080 kb on + strand, within DDA3937_RS03265 at 715.081 kb on - strand, within DDA3937_RS03265 at 715.081 kb on - strand, within DDA3937_RS03265 at 715.081 kb on - strand, within DDA3937_RS03265 at 715.338 kb on - strand at 715.369 kb on + strand at 715.369 kb on + strand at 715.370 kb on - strand at 715.370 kb on - strand at 715.370 kb on - strand at 715.370 kb on - strand at 715.385 kb on + strand at 715.386 kb on - strand at 715.399 kb on + strand at 715.399 kb on + strand at 715.399 kb on + strand at 715.399 kb on + strand at 715.447 kb on + strand at 715.447 kb on + strand at 715.460 kb on + strand at 715.460 kb on + strand at 715.461 kb on - strand at 715.461 kb on - strand at 715.481 kb on + strand at 715.534 kb on - strand at 715.539 kb on + strand at 715.539 kb on + strand at 715.540 kb on - strand at 715.540 kb on - strand at 715.540 kb on - strand at 715.540 kb on - strand at 715.588 kb on - strand at 715.589 kb on + strand at 715.589 kb on + strand at 715.590 kb on - strand at 715.590 kb on - strand at 715.616 kb on + strand at 715.663 kb on + strand, within DDA3937_RS03270 at 715.663 kb on + strand, within DDA3937_RS03270 at 715.664 kb on - strand, within DDA3937_RS03270 at 715.664 kb on - strand, within DDA3937_RS03270 at 715.664 kb on - strand, within DDA3937_RS03270 at 715.664 kb on - strand, within DDA3937_RS03270 at 715.664 kb on - strand, within DDA3937_RS03270 at 715.666 kb on + strand, within DDA3937_RS03270 at 715.666 kb on + strand, within DDA3937_RS03270 at 715.716 kb on + strand, within DDA3937_RS03270 at 715.718 kb on + strand at 715.718 kb on + strand, within DDA3937_RS03270 at 715.718 kb on + strand, within DDA3937_RS03270 at 715.718 kb on + strand, within DDA3937_RS03270 at 715.718 kb on + strand, within DDA3937_RS03270 at 715.719 kb on - strand, within DDA3937_RS03270 at 715.719 kb on - strand, within DDA3937_RS03270 at 715.723 kb on + strand, within DDA3937_RS03270 at 715.723 kb on + strand, within DDA3937_RS03270 at 715.723 kb on + strand, within DDA3937_RS03270 at 715.723 kb on + strand, within DDA3937_RS03270 at 715.723 kb on + strand, within DDA3937_RS03270 at 715.723 kb on + strand, within DDA3937_RS03270 at 715.723 kb on + strand, within DDA3937_RS03270 at 715.723 kb on + strand, within DDA3937_RS03270 at 715.723 kb on + strand, within DDA3937_RS03270 at 715.723 kb on + strand, within DDA3937_RS03270 at 715.723 kb on + strand, within DDA3937_RS03270 at 715.724 kb on - strand, within DDA3937_RS03270 at 715.724 kb on - strand, within DDA3937_RS03270 at 715.724 kb on - strand, within DDA3937_RS03270 at 715.724 kb on - strand, within DDA3937_RS03270 at 715.726 kb on - strand, within DDA3937_RS03270 at 715.726 kb on - strand, within DDA3937_RS03270 at 715.726 kb on - strand, within DDA3937_RS03270 at 715.726 kb on - strand, within DDA3937_RS03270 at 715.744 kb on + strand, within DDA3937_RS03270 at 715.745 kb on - strand, within DDA3937_RS03270 at 715.768 kb on - strand, within DDA3937_RS03270 at 715.768 kb on - strand, within DDA3937_RS03270 at 715.768 kb on - strand, within DDA3937_RS03270 at 715.830 kb on + strand, within DDA3937_RS03270 at 715.831 kb on - strand, within DDA3937_RS03270 at 715.831 kb on - strand, within DDA3937_RS03270 at 715.831 kb on - strand, within DDA3937_RS03270 at 715.831 kb on - strand, within DDA3937_RS03270 at 715.851 kb on + strand, within DDA3937_RS03270 at 715.851 kb on + strand, within DDA3937_RS03270 at 715.851 kb on + strand, within DDA3937_RS03270 at 715.851 kb on + strand, within DDA3937_RS03270 at 715.851 kb on + strand, within DDA3937_RS03270 at 715.851 kb on + strand, within DDA3937_RS03270 at 715.851 kb on + strand, within DDA3937_RS03270 at 715.852 kb on - strand, within DDA3937_RS03270 at 715.852 kb on - strand, within DDA3937_RS03270 at 715.852 kb on - strand, within DDA3937_RS03270 at 715.852 kb on - strand, within DDA3937_RS03270 at 715.852 kb on - strand, within DDA3937_RS03270 at 715.852 kb on - strand, within DDA3937_RS03270 at 715.853 kb on + strand, within DDA3937_RS03270 at 715.854 kb on - strand, within DDA3937_RS03270 at 715.854 kb on - strand, within DDA3937_RS03270 at 715.877 kb on + strand, within DDA3937_RS03270 at 715.910 kb on + strand, within DDA3937_RS03270 at 715.910 kb on + strand, within DDA3937_RS03270 at 715.911 kb on - strand, within DDA3937_RS03270 at 715.939 kb on + strand, within DDA3937_RS03270 at 715.939 kb on + strand, within DDA3937_RS03270 at 715.939 kb on + strand, within DDA3937_RS03270 at 715.968 kb on - strand, within DDA3937_RS03270 at 715.968 kb on - strand, within DDA3937_RS03270 at 715.968 kb on - strand, within DDA3937_RS03270 at 715.985 kb on + strand, within DDA3937_RS03270 at 715.985 kb on + strand, within DDA3937_RS03270 at 715.986 kb on - strand, within DDA3937_RS03270 at 715.986 kb on - strand, within DDA3937_RS03270 at 715.986 kb on - strand, within DDA3937_RS03270 at 715.986 kb on - strand, within DDA3937_RS03270 at 715.989 kb on + strand, within DDA3937_RS03270 at 715.989 kb on + strand, within DDA3937_RS03270 at 715.990 kb on - strand, within DDA3937_RS03270 at 715.990 kb on - strand, within DDA3937_RS03270 at 715.990 kb on - strand, within DDA3937_RS03270 at 716.025 kb on + strand, within DDA3937_RS03270 at 716.025 kb on + strand, within DDA3937_RS03270 at 716.025 kb on + strand, within DDA3937_RS03270 at 716.026 kb on - strand, within DDA3937_RS03270 at 716.074 kb on + strand, within DDA3937_RS03270 at 716.088 kb on + strand, within DDA3937_RS03270 at 716.088 kb on + strand, within DDA3937_RS03270 at 716.089 kb on - strand, within DDA3937_RS03270 at 716.090 kb on + strand, within DDA3937_RS03270 at 716.090 kb on + strand, within DDA3937_RS03270 at 716.091 kb on - strand, within DDA3937_RS03270 at 716.091 kb on - strand, within DDA3937_RS03270 at 716.109 kb on + strand, within DDA3937_RS03270 at 716.109 kb on + strand, within DDA3937_RS03270 at 716.109 kb on + strand, within DDA3937_RS03270 at 716.110 kb on - strand, within DDA3937_RS03270 at 716.110 kb on - strand at 716.123 kb on + strand, within DDA3937_RS03270 at 716.124 kb on - strand, within DDA3937_RS03270 at 716.193 kb on + strand at 716.193 kb on + strand at 716.194 kb on - strand at 716.199 kb on + strand at 716.199 kb on + strand at 716.199 kb on + strand at 716.199 kb on + strand at 716.199 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 713,749 - +0.6 713,792 + -0.5 713,793 - +0.5 713,793 - +0.1 713,793 - +0.0 713,827 - +1.5 713,827 - -1.7 713,832 + -0.7 713,832 + -0.9 713,833 - -0.2 713,833 - +0.1 713,845 + -0.1 713,846 - +0.7 713,846 - +0.7 713,857 - -0.8 713,857 - -0.8 713,951 + +1.1 713,951 + -0.0 713,951 + -1.2 713,951 + +0.4 713,951 + -0.2 713,951 + -0.8 713,952 - -0.2 713,952 - +0.0 714,027 + +1.1 714,040 + +0.1 714,041 - -0.2 714,041 - -0.2 714,053 - -1.3 714,106 + DDA3937_RS03260 0.13 +0.5 714,107 - DDA3937_RS03260 0.13 -1.3 714,242 - DDA3937_RS03260 0.34 +0.4 714,270 - DDA3937_RS03260 0.38 +0.8 714,270 - DDA3937_RS03260 0.38 +1.1 714,278 + DDA3937_RS03260 0.39 +0.2 714,279 - DDA3937_RS03260 0.39 -0.8 714,279 - DDA3937_RS03260 0.39 +1.0 714,279 - DDA3937_RS03260 0.39 +0.3 714,279 - DDA3937_RS03260 0.39 +0.2 714,280 + DDA3937_RS03260 0.39 -1.3 714,408 + DDA3937_RS03260 0.59 -0.6 714,408 + DDA3937_RS03260 0.59 -0.4 714,409 - +1.4 714,409 - DDA3937_RS03260 0.59 -0.6 714,409 - DDA3937_RS03260 0.59 -0.9 714,610 + -0.1 714,610 + -0.2 714,610 + +0.5 714,611 - -0.0 714,631 + +0.4 714,631 + -0.2 714,632 - -2.6 714,745 - +0.6 714,792 + -0.1 714,793 - -0.3 714,814 + DDA3937_RS03265 0.12 -1.1 714,814 + DDA3937_RS03265 0.12 +0.4 714,824 - DDA3937_RS03265 0.13 -0.7 714,859 + DDA3937_RS03265 0.19 -1.1 714,869 + DDA3937_RS03265 0.21 -0.7 714,966 + DDA3937_RS03265 0.37 -1.1 714,967 - DDA3937_RS03265 0.37 -0.5 715,080 + DDA3937_RS03265 0.55 -0.7 715,080 + DDA3937_RS03265 0.55 -1.2 715,081 - DDA3937_RS03265 0.56 +0.6 715,081 - DDA3937_RS03265 0.56 -0.3 715,081 - DDA3937_RS03265 0.56 +0.2 715,338 - -0.1 715,369 + +0.4 715,369 + -0.3 715,370 - -0.5 715,370 - -1.1 715,370 - +0.2 715,370 - -0.4 715,385 + -0.3 715,386 - -0.5 715,399 + +0.1 715,399 + -0.1 715,399 + -0.4 715,399 + -0.5 715,447 + -0.2 715,447 + -0.3 715,460 + +0.9 715,460 + +1.1 715,461 - -1.0 715,461 - -0.6 715,481 + -0.6 715,534 - +0.2 715,539 + -0.7 715,539 + -1.5 715,540 - +0.7 715,540 - -0.4 715,540 - -0.7 715,540 - +0.9 715,588 - +1.4 715,589 + -0.9 715,589 + +0.3 715,590 - -0.9 715,590 - -0.9 715,616 + -0.8 715,663 + DDA3937_RS03270 0.16 -0.1 715,663 + DDA3937_RS03270 0.16 -0.8 715,664 - DDA3937_RS03270 0.16 -2.6 715,664 - DDA3937_RS03270 0.16 -1.5 715,664 - DDA3937_RS03270 0.16 -0.3 715,664 - DDA3937_RS03270 0.16 -1.2 715,664 - DDA3937_RS03270 0.16 -0.5 715,666 + DDA3937_RS03270 0.16 +0.1 715,666 + DDA3937_RS03270 0.16 -0.6 715,716 + DDA3937_RS03270 0.24 -0.0 715,718 + +1.1 715,718 + DDA3937_RS03270 0.24 -0.4 715,718 + DDA3937_RS03270 0.24 -0.4 715,718 + DDA3937_RS03270 0.24 -0.2 715,718 + DDA3937_RS03270 0.24 -0.3 715,719 - DDA3937_RS03270 0.24 +0.0 715,719 - DDA3937_RS03270 0.24 -0.5 715,723 + DDA3937_RS03270 0.25 -0.4 715,723 + DDA3937_RS03270 0.25 -1.5 715,723 + DDA3937_RS03270 0.25 -0.3 715,723 + DDA3937_RS03270 0.25 -0.2 715,723 + DDA3937_RS03270 0.25 +0.2 715,723 + DDA3937_RS03270 0.25 -0.9 715,723 + DDA3937_RS03270 0.25 -0.3 715,723 + DDA3937_RS03270 0.25 -0.3 715,723 + DDA3937_RS03270 0.25 +0.3 715,723 + DDA3937_RS03270 0.25 +1.7 715,723 + DDA3937_RS03270 0.25 -0.2 715,724 - DDA3937_RS03270 0.25 -0.5 715,724 - DDA3937_RS03270 0.25 +0.1 715,724 - DDA3937_RS03270 0.25 +1.9 715,724 - DDA3937_RS03270 0.25 -0.2 715,726 - DDA3937_RS03270 0.25 -0.9 715,726 - DDA3937_RS03270 0.25 -1.5 715,726 - DDA3937_RS03270 0.25 -0.6 715,726 - DDA3937_RS03270 0.25 -0.9 715,744 + DDA3937_RS03270 0.28 -0.9 715,745 - DDA3937_RS03270 0.28 -0.4 715,768 - DDA3937_RS03270 0.32 +1.4 715,768 - DDA3937_RS03270 0.32 -1.0 715,768 - DDA3937_RS03270 0.32 -1.3 715,830 + DDA3937_RS03270 0.41 +0.3 715,831 - DDA3937_RS03270 0.42 -0.9 715,831 - DDA3937_RS03270 0.42 +0.5 715,831 - DDA3937_RS03270 0.42 -2.1 715,831 - DDA3937_RS03270 0.42 -0.3 715,851 + DDA3937_RS03270 0.45 -0.3 715,851 + DDA3937_RS03270 0.45 -1.1 715,851 + DDA3937_RS03270 0.45 -0.8 715,851 + DDA3937_RS03270 0.45 -0.3 715,851 + DDA3937_RS03270 0.45 +1.1 715,851 + DDA3937_RS03270 0.45 +0.4 715,851 + DDA3937_RS03270 0.45 -0.3 715,852 - DDA3937_RS03270 0.45 -0.2 715,852 - DDA3937_RS03270 0.45 -1.3 715,852 - DDA3937_RS03270 0.45 -0.9 715,852 - DDA3937_RS03270 0.45 -0.8 715,852 - DDA3937_RS03270 0.45 +0.2 715,852 - DDA3937_RS03270 0.45 +0.1 715,853 + DDA3937_RS03270 0.45 +0.1 715,854 - DDA3937_RS03270 0.45 -0.7 715,854 - DDA3937_RS03270 0.45 +0.9 715,877 + DDA3937_RS03270 0.49 +1.4 715,910 + DDA3937_RS03270 0.54 +0.8 715,910 + DDA3937_RS03270 0.54 +0.0 715,911 - DDA3937_RS03270 0.54 -1.1 715,939 + DDA3937_RS03270 0.58 -1.0 715,939 + DDA3937_RS03270 0.58 +0.5 715,939 + DDA3937_RS03270 0.58 -0.6 715,968 - DDA3937_RS03270 0.63 -1.2 715,968 - DDA3937_RS03270 0.63 -0.7 715,968 - DDA3937_RS03270 0.63 -0.6 715,985 + DDA3937_RS03270 0.65 -1.2 715,985 + DDA3937_RS03270 0.65 +0.2 715,986 - DDA3937_RS03270 0.65 -0.9 715,986 - DDA3937_RS03270 0.65 -0.1 715,986 - DDA3937_RS03270 0.65 -0.7 715,986 - DDA3937_RS03270 0.65 -0.1 715,989 + DDA3937_RS03270 0.66 +0.5 715,989 + DDA3937_RS03270 0.66 -0.1 715,990 - DDA3937_RS03270 0.66 -0.0 715,990 - DDA3937_RS03270 0.66 -0.8 715,990 - DDA3937_RS03270 0.66 -1.2 716,025 + DDA3937_RS03270 0.71 +0.4 716,025 + DDA3937_RS03270 0.71 -1.0 716,025 + DDA3937_RS03270 0.71 -0.9 716,026 - DDA3937_RS03270 0.72 +0.0 716,074 + DDA3937_RS03270 0.79 -0.3 716,088 + DDA3937_RS03270 0.81 -3.2 716,088 + DDA3937_RS03270 0.81 -0.6 716,089 - DDA3937_RS03270 0.81 +0.1 716,090 + DDA3937_RS03270 0.81 +1.9 716,090 + DDA3937_RS03270 0.81 +0.2 716,091 - DDA3937_RS03270 0.82 -0.1 716,091 - DDA3937_RS03270 0.82 +0.1 716,109 + DDA3937_RS03270 0.84 -1.0 716,109 + DDA3937_RS03270 0.84 -1.7 716,109 + DDA3937_RS03270 0.84 +2.4 716,110 - DDA3937_RS03270 0.84 -0.2 716,110 - +1.1 716,123 + DDA3937_RS03270 0.86 +1.0 716,124 - DDA3937_RS03270 0.87 -0.2 716,193 + +0.1 716,193 + -1.3 716,194 - +0.1 716,199 + -0.0 716,199 + +0.7 716,199 + +0.5 716,199 + -0.4 716,199 + +1.1
Or see this region's nucleotide sequence