Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS03165 and DDA3937_RS03170 are separated by 127 nucleotides DDA3937_RS03170 and DDA3937_RS03175 are separated by 60 nucleotides DDA3937_RS03175 and DDA3937_RS03180 are separated by 101 nucleotides DDA3937_RS03180 and DDA3937_RS03185 overlap by 32 nucleotides
DDA3937_RS03165: DDA3937_RS03165 - LysR family transcriptional regulator, at 696,596 to 697,513
_RS03165
DDA3937_RS03170: DDA3937_RS03170 - nuclear transport factor 2 family protein, at 697,641 to 698,036
_RS03170
DDA3937_RS03175: DDA3937_RS03175 - antibiotic biosynthesis monooxygenase, at 698,097 to 698,489
_RS03175
DDA3937_RS03180: DDA3937_RS03180 - ribosomal protein S18-alanine N-acetyltransferase, at 698,591 to 699,034
_RS03180
DDA3937_RS03185: DDA3937_RS03185 - DNA polymerase III subunit psi, at 699,003 to 699,422
_RS03185
Position (kb) 697
698
699 Strain fitness (log2 ratio) -2
-1
0
1
2 at 696.821 kb on + strand, within DDA3937_RS03165 at 696.821 kb on + strand, within DDA3937_RS03165 at 696.822 kb on - strand, within DDA3937_RS03165 at 696.822 kb on - strand, within DDA3937_RS03165 at 696.822 kb on - strand, within DDA3937_RS03165 at 696.946 kb on + strand, within DDA3937_RS03165 at 696.947 kb on - strand, within DDA3937_RS03165 at 697.032 kb on + strand, within DDA3937_RS03165 at 697.032 kb on + strand, within DDA3937_RS03165 at 697.032 kb on + strand, within DDA3937_RS03165 at 697.032 kb on + strand, within DDA3937_RS03165 at 697.032 kb on + strand, within DDA3937_RS03165 at 697.032 kb on + strand, within DDA3937_RS03165 at 697.032 kb on + strand, within DDA3937_RS03165 at 697.033 kb on - strand, within DDA3937_RS03165 at 697.033 kb on - strand, within DDA3937_RS03165 at 697.033 kb on - strand, within DDA3937_RS03165 at 697.033 kb on - strand, within DDA3937_RS03165 at 697.033 kb on - strand, within DDA3937_RS03165 at 697.033 kb on - strand, within DDA3937_RS03165 at 697.033 kb on - strand, within DDA3937_RS03165 at 697.036 kb on + strand, within DDA3937_RS03165 at 697.036 kb on + strand, within DDA3937_RS03165 at 697.037 kb on - strand, within DDA3937_RS03165 at 697.095 kb on - strand, within DDA3937_RS03165 at 697.095 kb on - strand, within DDA3937_RS03165 at 697.116 kb on - strand, within DDA3937_RS03165 at 697.116 kb on - strand, within DDA3937_RS03165 at 697.178 kb on + strand, within DDA3937_RS03165 at 697.178 kb on + strand, within DDA3937_RS03165 at 697.178 kb on + strand, within DDA3937_RS03165 at 697.178 kb on + strand, within DDA3937_RS03165 at 697.178 kb on + strand, within DDA3937_RS03165 at 697.179 kb on - strand, within DDA3937_RS03165 at 697.179 kb on - strand, within DDA3937_RS03165 at 697.179 kb on - strand, within DDA3937_RS03165 at 697.179 kb on - strand, within DDA3937_RS03165 at 697.179 kb on - strand, within DDA3937_RS03165 at 697.214 kb on - strand, within DDA3937_RS03165 at 697.241 kb on - strand, within DDA3937_RS03165 at 697.241 kb on - strand, within DDA3937_RS03165 at 697.333 kb on + strand, within DDA3937_RS03165 at 697.333 kb on + strand, within DDA3937_RS03165 at 697.334 kb on - strand, within DDA3937_RS03165 at 697.347 kb on - strand, within DDA3937_RS03165 at 697.424 kb on - strand at 697.443 kb on + strand at 697.444 kb on - strand at 697.455 kb on + strand at 697.455 kb on + strand at 697.455 kb on + strand at 697.455 kb on + strand at 697.455 kb on + strand at 697.455 kb on + strand at 697.455 kb on + strand at 697.456 kb on - strand at 697.456 kb on - strand at 697.456 kb on - strand at 697.456 kb on - strand at 697.456 kb on - strand at 697.456 kb on - strand at 697.456 kb on - strand at 697.458 kb on + strand at 697.478 kb on + strand at 697.478 kb on + strand at 697.479 kb on - strand at 697.580 kb on + strand at 697.580 kb on + strand at 697.580 kb on + strand at 697.580 kb on + strand at 697.580 kb on + strand at 697.581 kb on - strand at 697.581 kb on - strand at 697.581 kb on - strand at 697.671 kb on + strand at 697.672 kb on - strand at 697.672 kb on - strand at 697.672 kb on - strand at 697.694 kb on + strand, within DDA3937_RS03170 at 697.695 kb on - strand, within DDA3937_RS03170 at 697.743 kb on + strand, within DDA3937_RS03170 at 697.743 kb on + strand, within DDA3937_RS03170 at 697.743 kb on + strand, within DDA3937_RS03170 at 697.802 kb on + strand, within DDA3937_RS03170 at 697.814 kb on - strand, within DDA3937_RS03170 at 697.814 kb on - strand, within DDA3937_RS03170 at 697.845 kb on - strand, within DDA3937_RS03170 at 697.845 kb on - strand, within DDA3937_RS03170 at 697.848 kb on - strand, within DDA3937_RS03170 at 697.890 kb on + strand, within DDA3937_RS03170 at 697.891 kb on - strand, within DDA3937_RS03170 at 697.891 kb on - strand, within DDA3937_RS03170 at 697.891 kb on - strand, within DDA3937_RS03170 at 697.891 kb on - strand, within DDA3937_RS03170 at 697.929 kb on + strand, within DDA3937_RS03170 at 697.941 kb on + strand, within DDA3937_RS03170 at 697.941 kb on + strand, within DDA3937_RS03170 at 697.941 kb on + strand, within DDA3937_RS03170 at 697.942 kb on - strand, within DDA3937_RS03170 at 697.942 kb on - strand, within DDA3937_RS03170 at 698.000 kb on + strand at 698.034 kb on + strand at 698.035 kb on - strand at 698.072 kb on + strand at 698.084 kb on - strand at 698.084 kb on - strand at 698.123 kb on + strand at 698.123 kb on + strand at 698.123 kb on + strand at 698.123 kb on + strand at 698.124 kb on - strand at 698.124 kb on - strand at 698.124 kb on - strand at 698.124 kb on - strand at 698.181 kb on + strand, within DDA3937_RS03175 at 698.181 kb on + strand, within DDA3937_RS03175 at 698.182 kb on - strand, within DDA3937_RS03175 at 698.184 kb on + strand, within DDA3937_RS03175 at 698.185 kb on - strand, within DDA3937_RS03175 at 698.346 kb on + strand, within DDA3937_RS03175 at 698.346 kb on + strand, within DDA3937_RS03175 at 698.347 kb on - strand, within DDA3937_RS03175 at 698.347 kb on - strand, within DDA3937_RS03175 at 698.378 kb on - strand, within DDA3937_RS03175 at 698.399 kb on + strand, within DDA3937_RS03175 at 698.456 kb on + strand at 698.456 kb on + strand at 698.456 kb on + strand at 698.456 kb on + strand at 698.456 kb on + strand at 698.457 kb on - strand at 698.457 kb on - strand at 698.457 kb on - strand at 698.457 kb on - strand at 698.457 kb on - strand at 698.457 kb on - strand at 698.457 kb on - strand at 698.511 kb on + strand at 698.511 kb on + strand at 698.511 kb on + strand at 698.511 kb on + strand at 698.511 kb on + strand at 698.511 kb on + strand at 698.511 kb on + strand at 698.511 kb on + strand at 698.511 kb on + strand at 698.511 kb on + strand at 698.511 kb on + strand at 698.511 kb on + strand at 698.511 kb on + strand at 698.511 kb on + strand at 698.511 kb on + strand at 698.511 kb on + strand at 698.511 kb on + strand at 698.511 kb on + strand at 698.512 kb on - strand at 698.512 kb on - strand at 698.512 kb on - strand at 698.512 kb on - strand at 698.512 kb on - strand at 698.512 kb on - strand at 698.512 kb on - strand at 698.512 kb on - strand at 698.512 kb on - strand at 698.512 kb on - strand at 698.512 kb on - strand at 698.512 kb on - strand at 698.512 kb on - strand at 698.512 kb on - strand at 698.513 kb on + strand at 698.513 kb on + strand at 698.513 kb on + strand at 698.513 kb on + strand at 698.513 kb on + strand at 698.513 kb on + strand at 698.513 kb on + strand at 698.513 kb on + strand at 698.513 kb on + strand at 698.513 kb on + strand at 698.513 kb on + strand at 698.513 kb on + strand at 698.513 kb on + strand at 698.513 kb on + strand at 698.514 kb on - strand at 698.514 kb on - strand at 698.514 kb on - strand at 698.514 kb on - strand at 698.514 kb on - strand at 698.514 kb on - strand at 698.514 kb on - strand at 698.514 kb on - strand at 698.514 kb on - strand at 698.514 kb on - strand at 698.514 kb on - strand at 698.514 kb on - strand at 698.514 kb on - strand at 698.514 kb on - strand at 698.514 kb on - strand at 698.514 kb on - strand at 698.515 kb on + strand at 698.515 kb on + strand at 698.515 kb on + strand at 698.515 kb on + strand at 698.515 kb on + strand at 698.515 kb on + strand at 698.515 kb on + strand at 698.515 kb on + strand at 698.515 kb on + strand at 698.515 kb on + strand at 698.515 kb on + strand at 698.515 kb on + strand at 698.515 kb on + strand at 698.515 kb on + strand at 698.515 kb on + strand at 698.515 kb on + strand at 698.515 kb on + strand at 698.515 kb on + strand at 698.516 kb on - strand at 698.516 kb on - strand at 698.516 kb on - strand at 698.516 kb on - strand at 698.516 kb on - strand at 698.516 kb on - strand at 698.516 kb on - strand at 698.516 kb on - strand at 698.516 kb on - strand at 698.516 kb on - strand at 698.516 kb on - strand at 698.516 kb on - strand at 698.516 kb on - strand at 698.516 kb on - strand at 698.516 kb on - strand at 698.516 kb on - strand at 698.516 kb on - strand at 698.516 kb on - strand at 698.517 kb on + strand at 698.517 kb on + strand at 698.517 kb on + strand at 698.517 kb on + strand at 698.517 kb on + strand at 698.517 kb on + strand at 698.517 kb on + strand at 698.517 kb on + strand at 698.517 kb on + strand at 698.517 kb on + strand at 698.517 kb on + strand at 698.517 kb on + strand at 698.517 kb on + strand at 698.517 kb on + strand at 698.517 kb on + strand at 698.518 kb on - strand at 698.518 kb on - strand at 698.518 kb on - strand at 698.518 kb on - strand at 698.518 kb on - strand at 698.518 kb on - strand at 698.518 kb on - strand at 698.518 kb on - strand at 698.518 kb on - strand at 698.518 kb on - strand at 698.518 kb on - strand at 698.518 kb on - strand at 698.518 kb on - strand at 698.518 kb on - strand at 698.525 kb on + strand at 698.531 kb on + strand at 698.532 kb on - strand at 698.563 kb on + strand at 698.564 kb on - strand at 698.566 kb on + strand at 698.566 kb on + strand at 698.566 kb on + strand at 698.566 kb on + strand at 698.567 kb on - strand at 698.567 kb on - strand at 698.567 kb on - strand at 698.649 kb on + strand, within DDA3937_RS03180 at 698.691 kb on + strand, within DDA3937_RS03180 at 698.859 kb on - strand, within DDA3937_RS03180 at 698.859 kb on - strand, within DDA3937_RS03180 at 698.859 kb on - strand, within DDA3937_RS03180 at 698.859 kb on - strand, within DDA3937_RS03180 at 698.866 kb on + strand, within DDA3937_RS03180 at 698.874 kb on + strand, within DDA3937_RS03180 at 698.875 kb on - strand, within DDA3937_RS03180 at 698.916 kb on + strand, within DDA3937_RS03180
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 696,821 + DDA3937_RS03165 0.25 -0.8 696,821 + DDA3937_RS03165 0.25 -0.3 696,822 - DDA3937_RS03165 0.25 -0.4 696,822 - DDA3937_RS03165 0.25 -0.4 696,822 - DDA3937_RS03165 0.25 -1.5 696,946 + DDA3937_RS03165 0.38 -0.8 696,947 - DDA3937_RS03165 0.38 -0.9 697,032 + DDA3937_RS03165 0.47 -0.6 697,032 + DDA3937_RS03165 0.47 -0.5 697,032 + DDA3937_RS03165 0.47 +0.5 697,032 + DDA3937_RS03165 0.47 -0.5 697,032 + DDA3937_RS03165 0.47 +0.1 697,032 + DDA3937_RS03165 0.47 +1.6 697,032 + DDA3937_RS03165 0.47 -0.2 697,033 - DDA3937_RS03165 0.48 -0.3 697,033 - DDA3937_RS03165 0.48 -0.4 697,033 - DDA3937_RS03165 0.48 -0.6 697,033 - DDA3937_RS03165 0.48 -0.5 697,033 - DDA3937_RS03165 0.48 -1.7 697,033 - DDA3937_RS03165 0.48 -0.9 697,033 - DDA3937_RS03165 0.48 -1.0 697,036 + DDA3937_RS03165 0.48 -0.2 697,036 + DDA3937_RS03165 0.48 -0.0 697,037 - DDA3937_RS03165 0.48 -0.6 697,095 - DDA3937_RS03165 0.54 -0.7 697,095 - DDA3937_RS03165 0.54 -0.5 697,116 - DDA3937_RS03165 0.57 -0.9 697,116 - DDA3937_RS03165 0.57 -0.5 697,178 + DDA3937_RS03165 0.63 +0.1 697,178 + DDA3937_RS03165 0.63 -0.3 697,178 + DDA3937_RS03165 0.63 +1.3 697,178 + DDA3937_RS03165 0.63 -1.2 697,178 + DDA3937_RS03165 0.63 +0.3 697,179 - DDA3937_RS03165 0.64 -0.2 697,179 - DDA3937_RS03165 0.64 -0.1 697,179 - DDA3937_RS03165 0.64 -1.2 697,179 - DDA3937_RS03165 0.64 -0.2 697,179 - DDA3937_RS03165 0.64 +0.3 697,214 - DDA3937_RS03165 0.67 -0.6 697,241 - DDA3937_RS03165 0.70 +0.8 697,241 - DDA3937_RS03165 0.70 -0.5 697,333 + DDA3937_RS03165 0.80 +0.3 697,333 + DDA3937_RS03165 0.80 -0.7 697,334 - DDA3937_RS03165 0.80 +0.5 697,347 - DDA3937_RS03165 0.82 -2.1 697,424 - -1.0 697,443 + +0.2 697,444 - -1.3 697,455 + -0.7 697,455 + +0.0 697,455 + -0.5 697,455 + -2.2 697,455 + -0.4 697,455 + -1.1 697,455 + -0.4 697,456 - +0.5 697,456 - -0.5 697,456 - -0.3 697,456 - -1.5 697,456 - -0.5 697,456 - +0.7 697,456 - +0.5 697,458 + -0.3 697,478 + -1.7 697,478 + -0.4 697,479 - +0.3 697,580 + -0.9 697,580 + -0.3 697,580 + +0.7 697,580 + +0.3 697,580 + -1.0 697,581 - -1.0 697,581 - -0.3 697,581 - -2.0 697,671 + +0.2 697,672 - -0.3 697,672 - -0.7 697,672 - -0.0 697,694 + DDA3937_RS03170 0.13 -0.8 697,695 - DDA3937_RS03170 0.14 -0.2 697,743 + DDA3937_RS03170 0.26 -1.0 697,743 + DDA3937_RS03170 0.26 -0.5 697,743 + DDA3937_RS03170 0.26 -0.1 697,802 + DDA3937_RS03170 0.41 -1.8 697,814 - DDA3937_RS03170 0.44 -1.7 697,814 - DDA3937_RS03170 0.44 +0.0 697,845 - DDA3937_RS03170 0.52 -0.9 697,845 - DDA3937_RS03170 0.52 +0.9 697,848 - DDA3937_RS03170 0.52 -1.7 697,890 + DDA3937_RS03170 0.63 -0.4 697,891 - DDA3937_RS03170 0.63 -1.4 697,891 - DDA3937_RS03170 0.63 +0.1 697,891 - DDA3937_RS03170 0.63 -0.2 697,891 - DDA3937_RS03170 0.63 -1.8 697,929 + DDA3937_RS03170 0.73 -0.3 697,941 + DDA3937_RS03170 0.76 -1.3 697,941 + DDA3937_RS03170 0.76 +1.8 697,941 + DDA3937_RS03170 0.76 -1.9 697,942 - DDA3937_RS03170 0.76 -0.5 697,942 - DDA3937_RS03170 0.76 +0.8 698,000 + -0.2 698,034 + -1.5 698,035 - +0.1 698,072 + +0.5 698,084 - +0.0 698,084 - -0.7 698,123 + -0.6 698,123 + +0.1 698,123 + -0.5 698,123 + +1.7 698,124 - -0.6 698,124 - -0.5 698,124 - -0.9 698,124 - -0.5 698,181 + DDA3937_RS03175 0.21 +0.1 698,181 + DDA3937_RS03175 0.21 +0.0 698,182 - DDA3937_RS03175 0.22 +0.4 698,184 + DDA3937_RS03175 0.22 -0.2 698,185 - DDA3937_RS03175 0.22 -0.5 698,346 + DDA3937_RS03175 0.63 -0.2 698,346 + DDA3937_RS03175 0.63 -0.2 698,347 - DDA3937_RS03175 0.64 -0.6 698,347 - DDA3937_RS03175 0.64 +0.4 698,378 - DDA3937_RS03175 0.72 -0.5 698,399 + DDA3937_RS03175 0.77 +0.2 698,456 + -0.9 698,456 + -0.3 698,456 + +0.8 698,456 + -0.2 698,456 + +0.3 698,457 - +0.5 698,457 - +0.3 698,457 - -1.3 698,457 - +0.2 698,457 - -0.4 698,457 - +0.3 698,457 - -0.5 698,511 + +0.1 698,511 + -0.7 698,511 + +0.2 698,511 + -0.2 698,511 + -2.3 698,511 + +0.1 698,511 + +0.4 698,511 + +1.5 698,511 + +0.3 698,511 + -0.5 698,511 + -0.5 698,511 + -0.2 698,511 + -0.9 698,511 + +1.3 698,511 + -0.3 698,511 + -0.9 698,511 + +0.3 698,511 + -1.0 698,512 - -0.2 698,512 - -0.3 698,512 - +0.6 698,512 - -0.7 698,512 - -0.5 698,512 - -0.2 698,512 - -0.1 698,512 - -0.7 698,512 - -0.3 698,512 - -0.5 698,512 - +0.1 698,512 - -0.1 698,512 - -0.2 698,512 - -0.0 698,513 + +0.2 698,513 + -0.0 698,513 + -0.1 698,513 + +0.1 698,513 + +0.5 698,513 + -0.9 698,513 + +1.1 698,513 + -0.4 698,513 + -0.6 698,513 + +0.0 698,513 + +0.3 698,513 + -0.7 698,513 + +0.1 698,513 + -0.1 698,514 - -0.6 698,514 - +0.3 698,514 - +1.1 698,514 - -0.7 698,514 - +0.1 698,514 - +0.1 698,514 - -1.3 698,514 - +0.4 698,514 - -0.8 698,514 - -1.1 698,514 - -0.1 698,514 - +0.5 698,514 - -0.5 698,514 - -0.1 698,514 - -0.2 698,514 - -1.0 698,515 + -0.8 698,515 + +0.5 698,515 + -0.0 698,515 + +0.4 698,515 + -2.3 698,515 + +1.0 698,515 + +0.1 698,515 + -1.0 698,515 + +2.7 698,515 + -0.8 698,515 + +0.5 698,515 + +0.7 698,515 + -0.2 698,515 + -0.5 698,515 + +0.4 698,515 + -0.1 698,515 + -0.1 698,515 + -0.9 698,516 - -0.9 698,516 - +0.1 698,516 - -1.3 698,516 - -0.7 698,516 - -0.2 698,516 - -1.7 698,516 - -2.7 698,516 - -0.5 698,516 - -0.2 698,516 - +0.2 698,516 - -0.2 698,516 - +0.5 698,516 - -2.1 698,516 - -0.1 698,516 - +0.1 698,516 - -0.5 698,516 - -1.4 698,516 - +0.7 698,517 + +0.1 698,517 + -0.7 698,517 + -0.6 698,517 + +0.2 698,517 + -1.0 698,517 + -0.9 698,517 + -0.5 698,517 + -1.2 698,517 + +0.3 698,517 + +0.0 698,517 + +0.8 698,517 + -0.5 698,517 + -0.5 698,517 + -0.7 698,517 + +1.0 698,518 - -0.1 698,518 - -0.5 698,518 - -1.2 698,518 - -0.6 698,518 - -1.1 698,518 - -0.9 698,518 - +0.0 698,518 - -1.6 698,518 - -0.7 698,518 - +0.8 698,518 - -1.1 698,518 - -1.6 698,518 - +0.1 698,518 - +1.6 698,525 + -1.3 698,531 + -2.2 698,532 - +1.1 698,563 + +1.1 698,564 - +0.1 698,566 + +0.1 698,566 + +0.1 698,566 + -1.0 698,566 + -0.5 698,567 - -0.8 698,567 - -0.2 698,567 - +2.4 698,649 + DDA3937_RS03180 0.13 -0.9 698,691 + DDA3937_RS03180 0.23 -1.6 698,859 - DDA3937_RS03180 0.60 +0.5 698,859 - DDA3937_RS03180 0.60 -0.6 698,859 - DDA3937_RS03180 0.60 +0.1 698,859 - DDA3937_RS03180 0.60 -0.3 698,866 + DDA3937_RS03180 0.62 +0.3 698,874 + DDA3937_RS03180 0.64 +2.3 698,875 - DDA3937_RS03180 0.64 -1.0 698,916 + DDA3937_RS03180 0.73 +1.2
Or see this region's nucleotide sequence