Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS03095 and DDA3937_RS23000 are separated by 108 nucleotides DDA3937_RS23000 and DDA3937_RS03100 are separated by 12 nucleotides DDA3937_RS03100 and DDA3937_RS03105 are separated by 65 nucleotides
DDA3937_RS03095: DDA3937_RS03095 - lipoprotein NlpI, at 682,752 to 683,636
_RS03095
DDA3937_RS23000: DDA3937_RS23000 - protein YrbN, at 683,745 to 683,804
_RS23000
DDA3937_RS03100: DDA3937_RS03100 - DEAD/DEAH family ATP-dependent RNA helicase, at 683,817 to 685,712
_RS03100
DDA3937_RS03105: DDA3937_RS03105 - LLM class flavin-dependent oxidoreductase, at 685,778 to 686,797
_RS03105
Position (kb) 683
684
685
686 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 682.945 kb on + strand, within DDA3937_RS03095 at 682.945 kb on + strand, within DDA3937_RS03095 at 682.945 kb on + strand, within DDA3937_RS03095 at 682.946 kb on - strand, within DDA3937_RS03095 at 682.946 kb on - strand, within DDA3937_RS03095 at 682.947 kb on + strand, within DDA3937_RS03095 at 682.947 kb on + strand, within DDA3937_RS03095 at 682.948 kb on - strand, within DDA3937_RS03095 at 682.965 kb on + strand, within DDA3937_RS03095 at 682.965 kb on + strand, within DDA3937_RS03095 at 682.965 kb on + strand, within DDA3937_RS03095 at 682.965 kb on + strand, within DDA3937_RS03095 at 682.965 kb on + strand, within DDA3937_RS03095 at 682.966 kb on - strand, within DDA3937_RS03095 at 682.966 kb on - strand, within DDA3937_RS03095 at 683.052 kb on + strand, within DDA3937_RS03095 at 683.064 kb on + strand, within DDA3937_RS03095 at 683.065 kb on - strand, within DDA3937_RS03095 at 683.098 kb on - strand at 683.116 kb on + strand, within DDA3937_RS03095 at 683.119 kb on + strand, within DDA3937_RS03095 at 683.136 kb on + strand, within DDA3937_RS03095 at 683.136 kb on + strand, within DDA3937_RS03095 at 683.137 kb on - strand, within DDA3937_RS03095 at 683.173 kb on - strand, within DDA3937_RS03095 at 683.173 kb on - strand, within DDA3937_RS03095 at 683.175 kb on + strand, within DDA3937_RS03095 at 683.213 kb on - strand, within DDA3937_RS03095 at 683.319 kb on + strand, within DDA3937_RS03095 at 683.420 kb on + strand, within DDA3937_RS03095 at 683.420 kb on + strand, within DDA3937_RS03095 at 683.420 kb on + strand, within DDA3937_RS03095 at 683.420 kb on + strand, within DDA3937_RS03095 at 683.421 kb on - strand at 683.466 kb on + strand, within DDA3937_RS03095 at 683.466 kb on + strand, within DDA3937_RS03095 at 683.466 kb on + strand, within DDA3937_RS03095 at 683.466 kb on + strand, within DDA3937_RS03095 at 683.467 kb on - strand, within DDA3937_RS03095 at 683.467 kb on - strand, within DDA3937_RS03095 at 683.467 kb on - strand, within DDA3937_RS03095 at 683.470 kb on + strand, within DDA3937_RS03095 at 683.470 kb on + strand, within DDA3937_RS03095 at 683.474 kb on + strand, within DDA3937_RS03095 at 683.474 kb on + strand, within DDA3937_RS03095 at 683.481 kb on + strand, within DDA3937_RS03095 at 683.482 kb on - strand, within DDA3937_RS03095 at 683.485 kb on + strand, within DDA3937_RS03095 at 683.485 kb on + strand, within DDA3937_RS03095 at 683.485 kb on + strand, within DDA3937_RS03095 at 683.485 kb on + strand, within DDA3937_RS03095 at 683.485 kb on + strand, within DDA3937_RS03095 at 683.486 kb on - strand, within DDA3937_RS03095 at 683.486 kb on - strand, within DDA3937_RS03095 at 683.486 kb on - strand, within DDA3937_RS03095 at 683.486 kb on - strand, within DDA3937_RS03095 at 683.486 kb on - strand, within DDA3937_RS03095 at 683.486 kb on - strand, within DDA3937_RS03095 at 683.486 kb on - strand, within DDA3937_RS03095 at 683.593 kb on + strand at 683.593 kb on + strand at 683.593 kb on + strand at 683.614 kb on + strand at 683.614 kb on + strand at 683.615 kb on - strand at 683.634 kb on + strand at 683.634 kb on + strand at 683.634 kb on + strand at 683.634 kb on + strand at 683.634 kb on + strand at 683.635 kb on - strand at 684.775 kb on - strand, within DDA3937_RS03100 at 685.023 kb on + strand, within DDA3937_RS03100 at 685.024 kb on - strand, within DDA3937_RS03100 at 685.211 kb on + strand, within DDA3937_RS03100 at 685.211 kb on + strand, within DDA3937_RS03100 at 685.211 kb on + strand, within DDA3937_RS03100 at 685.333 kb on + strand, within DDA3937_RS03100 at 685.347 kb on - strand, within DDA3937_RS03100 at 685.611 kb on - strand at 685.774 kb on + strand at 685.862 kb on + strand at 686.063 kb on - strand, within DDA3937_RS03105 at 686.135 kb on + strand, within DDA3937_RS03105 at 686.135 kb on + strand, within DDA3937_RS03105 at 686.135 kb on + strand, within DDA3937_RS03105 at 686.136 kb on - strand, within DDA3937_RS03105 at 686.136 kb on - strand, within DDA3937_RS03105 at 686.136 kb on - strand, within DDA3937_RS03105 at 686.136 kb on - strand, within DDA3937_RS03105 at 686.136 kb on - strand, within DDA3937_RS03105 at 686.136 kb on - strand, within DDA3937_RS03105 at 686.145 kb on + strand, within DDA3937_RS03105 at 686.145 kb on + strand, within DDA3937_RS03105 at 686.146 kb on - strand, within DDA3937_RS03105 at 686.146 kb on - strand at 686.146 kb on - strand, within DDA3937_RS03105 at 686.146 kb on - strand at 686.212 kb on + strand, within DDA3937_RS03105 at 686.212 kb on + strand, within DDA3937_RS03105 at 686.277 kb on + strand, within DDA3937_RS03105 at 686.278 kb on - strand, within DDA3937_RS03105 at 686.337 kb on - strand, within DDA3937_RS03105 at 686.384 kb on + strand, within DDA3937_RS03105 at 686.385 kb on - strand, within DDA3937_RS03105 at 686.385 kb on - strand, within DDA3937_RS03105 at 686.385 kb on - strand, within DDA3937_RS03105 at 686.485 kb on + strand, within DDA3937_RS03105 at 686.581 kb on + strand, within DDA3937_RS03105 at 686.604 kb on + strand, within DDA3937_RS03105 at 686.605 kb on - strand, within DDA3937_RS03105 at 686.605 kb on - strand, within DDA3937_RS03105 at 686.605 kb on - strand, within DDA3937_RS03105 at 686.623 kb on + strand, within DDA3937_RS03105 at 686.623 kb on + strand, within DDA3937_RS03105 at 686.624 kb on - strand, within DDA3937_RS03105 at 686.624 kb on - strand, within DDA3937_RS03105 at 686.624 kb on - strand, within DDA3937_RS03105 at 686.624 kb on - strand, within DDA3937_RS03105 at 686.624 kb on - strand, within DDA3937_RS03105 at 686.624 kb on - strand, within DDA3937_RS03105
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 682,945 + DDA3937_RS03095 0.22 -0.5 682,945 + DDA3937_RS03095 0.22 -0.4 682,945 + DDA3937_RS03095 0.22 -0.7 682,946 - DDA3937_RS03095 0.22 -1.4 682,946 - DDA3937_RS03095 0.22 -0.6 682,947 + DDA3937_RS03095 0.22 -2.5 682,947 + DDA3937_RS03095 0.22 -1.9 682,948 - DDA3937_RS03095 0.22 -0.9 682,965 + DDA3937_RS03095 0.24 +0.1 682,965 + DDA3937_RS03095 0.24 -1.4 682,965 + DDA3937_RS03095 0.24 -0.7 682,965 + DDA3937_RS03095 0.24 -1.2 682,965 + DDA3937_RS03095 0.24 -0.3 682,966 - DDA3937_RS03095 0.24 -1.6 682,966 - DDA3937_RS03095 0.24 +0.5 683,052 + DDA3937_RS03095 0.34 -0.2 683,064 + DDA3937_RS03095 0.35 -0.6 683,065 - DDA3937_RS03095 0.35 -0.4 683,098 - +0.1 683,116 + DDA3937_RS03095 0.41 +1.5 683,119 + DDA3937_RS03095 0.41 -3.0 683,136 + DDA3937_RS03095 0.43 +0.5 683,136 + DDA3937_RS03095 0.43 +1.4 683,137 - DDA3937_RS03095 0.44 -2.0 683,173 - DDA3937_RS03095 0.48 -1.4 683,173 - DDA3937_RS03095 0.48 -1.4 683,175 + DDA3937_RS03095 0.48 -0.4 683,213 - DDA3937_RS03095 0.52 +0.8 683,319 + DDA3937_RS03095 0.64 +0.1 683,420 + DDA3937_RS03095 0.75 -1.8 683,420 + DDA3937_RS03095 0.75 -2.3 683,420 + DDA3937_RS03095 0.75 -0.4 683,420 + DDA3937_RS03095 0.75 -2.0 683,421 - +0.1 683,466 + DDA3937_RS03095 0.81 -1.2 683,466 + DDA3937_RS03095 0.81 -0.2 683,466 + DDA3937_RS03095 0.81 +0.9 683,466 + DDA3937_RS03095 0.81 -0.4 683,467 - DDA3937_RS03095 0.81 -2.0 683,467 - DDA3937_RS03095 0.81 -0.4 683,467 - DDA3937_RS03095 0.81 -1.7 683,470 + DDA3937_RS03095 0.81 -0.9 683,470 + DDA3937_RS03095 0.81 -0.3 683,474 + DDA3937_RS03095 0.82 -1.0 683,474 + DDA3937_RS03095 0.82 -0.6 683,481 + DDA3937_RS03095 0.82 -0.3 683,482 - DDA3937_RS03095 0.82 +0.1 683,485 + DDA3937_RS03095 0.83 -0.4 683,485 + DDA3937_RS03095 0.83 -1.9 683,485 + DDA3937_RS03095 0.83 -0.9 683,485 + DDA3937_RS03095 0.83 -0.8 683,485 + DDA3937_RS03095 0.83 -1.2 683,486 - DDA3937_RS03095 0.83 +0.7 683,486 - DDA3937_RS03095 0.83 -0.9 683,486 - DDA3937_RS03095 0.83 -1.2 683,486 - DDA3937_RS03095 0.83 -1.7 683,486 - DDA3937_RS03095 0.83 -0.6 683,486 - DDA3937_RS03095 0.83 -0.7 683,486 - DDA3937_RS03095 0.83 +0.1 683,593 + -1.0 683,593 + +1.5 683,593 + -1.0 683,614 + -1.1 683,614 + +2.1 683,615 - -0.2 683,634 + -1.0 683,634 + +0.1 683,634 + +1.1 683,634 + -0.0 683,634 + -1.2 683,635 - -2.3 684,775 - DDA3937_RS03100 0.51 +0.4 685,023 + DDA3937_RS03100 0.64 -0.6 685,024 - DDA3937_RS03100 0.64 -0.3 685,211 + DDA3937_RS03100 0.74 -1.9 685,211 + DDA3937_RS03100 0.74 -2.9 685,211 + DDA3937_RS03100 0.74 -0.5 685,333 + DDA3937_RS03100 0.80 -1.9 685,347 - DDA3937_RS03100 0.81 -0.9 685,611 - -1.0 685,774 + -0.0 685,862 + -0.9 686,063 - DDA3937_RS03105 0.28 -0.1 686,135 + DDA3937_RS03105 0.35 +0.7 686,135 + DDA3937_RS03105 0.35 +0.1 686,135 + DDA3937_RS03105 0.35 -0.1 686,136 - DDA3937_RS03105 0.35 +1.0 686,136 - DDA3937_RS03105 0.35 -0.7 686,136 - DDA3937_RS03105 0.35 +0.0 686,136 - DDA3937_RS03105 0.35 -0.2 686,136 - DDA3937_RS03105 0.35 +0.1 686,136 - DDA3937_RS03105 0.35 +0.6 686,145 + DDA3937_RS03105 0.36 +0.1 686,145 + DDA3937_RS03105 0.36 +0.4 686,146 - DDA3937_RS03105 0.36 +0.1 686,146 - +1.1 686,146 - DDA3937_RS03105 0.36 +0.0 686,146 - -0.9 686,212 + DDA3937_RS03105 0.43 +0.1 686,212 + DDA3937_RS03105 0.43 -0.0 686,277 + DDA3937_RS03105 0.49 +0.6 686,278 - DDA3937_RS03105 0.49 +0.3 686,337 - DDA3937_RS03105 0.55 +0.9 686,384 + DDA3937_RS03105 0.59 -1.0 686,385 - DDA3937_RS03105 0.60 -0.3 686,385 - DDA3937_RS03105 0.60 +0.1 686,385 - DDA3937_RS03105 0.60 +0.3 686,485 + DDA3937_RS03105 0.69 -0.1 686,581 + DDA3937_RS03105 0.79 -0.9 686,604 + DDA3937_RS03105 0.81 -0.3 686,605 - DDA3937_RS03105 0.81 +0.2 686,605 - DDA3937_RS03105 0.81 +1.5 686,605 - DDA3937_RS03105 0.81 -2.0 686,623 + DDA3937_RS03105 0.83 -0.7 686,623 + DDA3937_RS03105 0.83 -2.8 686,624 - DDA3937_RS03105 0.83 -0.5 686,624 - DDA3937_RS03105 0.83 +0.3 686,624 - DDA3937_RS03105 0.83 -0.1 686,624 - DDA3937_RS03105 0.83 -1.0 686,624 - DDA3937_RS03105 0.83 +0.1 686,624 - DDA3937_RS03105 0.83 -0.6
Or see this region's nucleotide sequence