Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS03090 and DDA3937_RS03095 are separated by 127 nucleotides DDA3937_RS03095 and DDA3937_RS23000 are separated by 108 nucleotides DDA3937_RS23000 and DDA3937_RS03100 are separated by 12 nucleotides
DDA3937_RS03090: DDA3937_RS03090 - polyribonucleotide nucleotidyltransferase, at 680,504 to 682,624
_RS03090
DDA3937_RS03095: DDA3937_RS03095 - lipoprotein NlpI, at 682,752 to 683,636
_RS03095
DDA3937_RS23000: DDA3937_RS23000 - protein YrbN, at 683,745 to 683,804
_RS23000
DDA3937_RS03100: DDA3937_RS03100 - DEAD/DEAH family ATP-dependent RNA helicase, at 683,817 to 685,712
_RS03100
Position (kb) 682
683
684 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 681.777 kb on + strand, within DDA3937_RS03090 at 681.778 kb on - strand, within DDA3937_RS03090 at 681.786 kb on + strand, within DDA3937_RS03090 at 681.787 kb on - strand, within DDA3937_RS03090 at 682.214 kb on - strand, within DDA3937_RS03090 at 682.322 kb on + strand, within DDA3937_RS03090 at 682.322 kb on + strand at 682.322 kb on + strand, within DDA3937_RS03090 at 682.323 kb on - strand, within DDA3937_RS03090 at 682.323 kb on - strand, within DDA3937_RS03090 at 682.323 kb on - strand, within DDA3937_RS03090 at 682.373 kb on - strand, within DDA3937_RS03090 at 682.453 kb on + strand at 682.454 kb on - strand at 682.454 kb on - strand at 682.454 kb on - strand at 682.497 kb on - strand at 682.518 kb on + strand at 682.530 kb on + strand at 682.570 kb on - strand at 682.622 kb on + strand at 682.622 kb on + strand at 682.622 kb on + strand at 682.623 kb on - strand at 682.623 kb on - strand at 682.625 kb on + strand at 682.625 kb on + strand at 682.651 kb on + strand at 682.652 kb on - strand at 682.652 kb on - strand at 682.673 kb on + strand at 682.673 kb on + strand at 682.673 kb on + strand at 682.673 kb on + strand at 682.673 kb on + strand at 682.674 kb on - strand at 682.674 kb on - strand at 682.676 kb on + strand at 682.676 kb on + strand at 682.676 kb on + strand at 682.676 kb on + strand at 682.677 kb on - strand at 682.677 kb on - strand at 682.677 kb on - strand at 682.678 kb on + strand at 682.678 kb on + strand at 682.678 kb on + strand at 682.678 kb on + strand at 682.679 kb on - strand at 682.695 kb on + strand at 682.695 kb on + strand at 682.695 kb on + strand at 682.696 kb on - strand at 682.696 kb on - strand at 682.696 kb on - strand at 682.776 kb on + strand at 682.777 kb on - strand at 682.777 kb on - strand at 682.777 kb on - strand at 682.777 kb on - strand at 682.793 kb on + strand at 682.793 kb on + strand at 682.794 kb on - strand at 682.794 kb on - strand at 682.945 kb on + strand, within DDA3937_RS03095 at 682.945 kb on + strand, within DDA3937_RS03095 at 682.945 kb on + strand, within DDA3937_RS03095 at 682.946 kb on - strand, within DDA3937_RS03095 at 682.946 kb on - strand, within DDA3937_RS03095 at 682.947 kb on + strand, within DDA3937_RS03095 at 682.947 kb on + strand, within DDA3937_RS03095 at 682.948 kb on - strand, within DDA3937_RS03095 at 682.965 kb on + strand, within DDA3937_RS03095 at 682.965 kb on + strand, within DDA3937_RS03095 at 682.965 kb on + strand, within DDA3937_RS03095 at 682.965 kb on + strand, within DDA3937_RS03095 at 682.965 kb on + strand, within DDA3937_RS03095 at 682.966 kb on - strand, within DDA3937_RS03095 at 682.966 kb on - strand, within DDA3937_RS03095 at 683.052 kb on + strand, within DDA3937_RS03095 at 683.064 kb on + strand, within DDA3937_RS03095 at 683.065 kb on - strand, within DDA3937_RS03095 at 683.098 kb on - strand at 683.116 kb on + strand, within DDA3937_RS03095 at 683.119 kb on + strand, within DDA3937_RS03095 at 683.136 kb on + strand, within DDA3937_RS03095 at 683.136 kb on + strand, within DDA3937_RS03095 at 683.137 kb on - strand, within DDA3937_RS03095 at 683.173 kb on - strand, within DDA3937_RS03095 at 683.173 kb on - strand, within DDA3937_RS03095 at 683.175 kb on + strand, within DDA3937_RS03095 at 683.213 kb on - strand, within DDA3937_RS03095 at 683.319 kb on + strand, within DDA3937_RS03095 at 683.420 kb on + strand, within DDA3937_RS03095 at 683.420 kb on + strand, within DDA3937_RS03095 at 683.420 kb on + strand, within DDA3937_RS03095 at 683.420 kb on + strand, within DDA3937_RS03095 at 683.421 kb on - strand at 683.466 kb on + strand, within DDA3937_RS03095 at 683.466 kb on + strand, within DDA3937_RS03095 at 683.466 kb on + strand, within DDA3937_RS03095 at 683.466 kb on + strand, within DDA3937_RS03095 at 683.467 kb on - strand, within DDA3937_RS03095 at 683.467 kb on - strand, within DDA3937_RS03095 at 683.467 kb on - strand, within DDA3937_RS03095 at 683.470 kb on + strand, within DDA3937_RS03095 at 683.470 kb on + strand, within DDA3937_RS03095 at 683.474 kb on + strand, within DDA3937_RS03095 at 683.474 kb on + strand, within DDA3937_RS03095 at 683.481 kb on + strand, within DDA3937_RS03095 at 683.482 kb on - strand, within DDA3937_RS03095 at 683.485 kb on + strand, within DDA3937_RS03095 at 683.485 kb on + strand, within DDA3937_RS03095 at 683.485 kb on + strand, within DDA3937_RS03095 at 683.485 kb on + strand, within DDA3937_RS03095 at 683.485 kb on + strand, within DDA3937_RS03095 at 683.486 kb on - strand, within DDA3937_RS03095 at 683.486 kb on - strand, within DDA3937_RS03095 at 683.486 kb on - strand, within DDA3937_RS03095 at 683.486 kb on - strand, within DDA3937_RS03095 at 683.486 kb on - strand, within DDA3937_RS03095 at 683.486 kb on - strand, within DDA3937_RS03095 at 683.486 kb on - strand, within DDA3937_RS03095 at 683.593 kb on + strand at 683.593 kb on + strand at 683.593 kb on + strand at 683.614 kb on + strand at 683.614 kb on + strand at 683.615 kb on - strand at 683.634 kb on + strand at 683.634 kb on + strand at 683.634 kb on + strand at 683.634 kb on + strand at 683.634 kb on + strand at 683.635 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 681,777 + DDA3937_RS03090 0.60 +1.1 681,778 - DDA3937_RS03090 0.60 -0.4 681,786 + DDA3937_RS03090 0.60 -1.0 681,787 - DDA3937_RS03090 0.60 -0.6 682,214 - DDA3937_RS03090 0.81 +0.3 682,322 + DDA3937_RS03090 0.86 -2.1 682,322 + -0.9 682,322 + DDA3937_RS03090 0.86 -0.7 682,323 - DDA3937_RS03090 0.86 +0.5 682,323 - DDA3937_RS03090 0.86 -0.0 682,323 - DDA3937_RS03090 0.86 -0.9 682,373 - DDA3937_RS03090 0.88 -0.0 682,453 + -0.4 682,454 - -3.0 682,454 - -1.4 682,454 - -1.1 682,497 - -0.3 682,518 + +1.1 682,530 + -2.6 682,570 - +0.1 682,622 + -0.8 682,622 + -0.9 682,622 + -0.3 682,623 - +0.1 682,623 - +0.7 682,625 + +0.0 682,625 + -0.3 682,651 + +0.3 682,652 - -0.9 682,652 - -0.1 682,673 + -1.4 682,673 + -0.2 682,673 + -0.8 682,673 + -0.2 682,673 + -0.1 682,674 - -0.9 682,674 - -1.4 682,676 + +1.1 682,676 + +1.7 682,676 + +0.1 682,676 + -0.6 682,677 - -0.4 682,677 - +1.1 682,677 - -0.9 682,678 + +0.7 682,678 + -0.5 682,678 + -0.3 682,678 + +0.0 682,679 - -0.8 682,695 + +1.6 682,695 + -0.4 682,695 + -1.2 682,696 - -0.9 682,696 - -0.2 682,696 - -1.0 682,776 + -1.4 682,777 - -2.1 682,777 - +0.7 682,777 - +1.1 682,777 - -2.4 682,793 + -1.7 682,793 + -0.6 682,794 - +0.1 682,794 - -1.0 682,945 + DDA3937_RS03095 0.22 -0.5 682,945 + DDA3937_RS03095 0.22 -0.4 682,945 + DDA3937_RS03095 0.22 -0.7 682,946 - DDA3937_RS03095 0.22 -1.4 682,946 - DDA3937_RS03095 0.22 -0.6 682,947 + DDA3937_RS03095 0.22 -2.5 682,947 + DDA3937_RS03095 0.22 -1.9 682,948 - DDA3937_RS03095 0.22 -0.9 682,965 + DDA3937_RS03095 0.24 +0.1 682,965 + DDA3937_RS03095 0.24 -1.4 682,965 + DDA3937_RS03095 0.24 -0.7 682,965 + DDA3937_RS03095 0.24 -1.2 682,965 + DDA3937_RS03095 0.24 -0.3 682,966 - DDA3937_RS03095 0.24 -1.6 682,966 - DDA3937_RS03095 0.24 +0.5 683,052 + DDA3937_RS03095 0.34 -0.2 683,064 + DDA3937_RS03095 0.35 -0.6 683,065 - DDA3937_RS03095 0.35 -0.4 683,098 - +0.1 683,116 + DDA3937_RS03095 0.41 +1.5 683,119 + DDA3937_RS03095 0.41 -3.0 683,136 + DDA3937_RS03095 0.43 +0.5 683,136 + DDA3937_RS03095 0.43 +1.4 683,137 - DDA3937_RS03095 0.44 -2.0 683,173 - DDA3937_RS03095 0.48 -1.4 683,173 - DDA3937_RS03095 0.48 -1.4 683,175 + DDA3937_RS03095 0.48 -0.4 683,213 - DDA3937_RS03095 0.52 +0.8 683,319 + DDA3937_RS03095 0.64 +0.1 683,420 + DDA3937_RS03095 0.75 -1.8 683,420 + DDA3937_RS03095 0.75 -2.3 683,420 + DDA3937_RS03095 0.75 -0.4 683,420 + DDA3937_RS03095 0.75 -2.0 683,421 - +0.1 683,466 + DDA3937_RS03095 0.81 -1.2 683,466 + DDA3937_RS03095 0.81 -0.2 683,466 + DDA3937_RS03095 0.81 +0.9 683,466 + DDA3937_RS03095 0.81 -0.4 683,467 - DDA3937_RS03095 0.81 -2.0 683,467 - DDA3937_RS03095 0.81 -0.4 683,467 - DDA3937_RS03095 0.81 -1.7 683,470 + DDA3937_RS03095 0.81 -0.9 683,470 + DDA3937_RS03095 0.81 -0.3 683,474 + DDA3937_RS03095 0.82 -1.0 683,474 + DDA3937_RS03095 0.82 -0.6 683,481 + DDA3937_RS03095 0.82 -0.3 683,482 - DDA3937_RS03095 0.82 +0.1 683,485 + DDA3937_RS03095 0.83 -0.4 683,485 + DDA3937_RS03095 0.83 -1.9 683,485 + DDA3937_RS03095 0.83 -0.9 683,485 + DDA3937_RS03095 0.83 -0.8 683,485 + DDA3937_RS03095 0.83 -1.2 683,486 - DDA3937_RS03095 0.83 +0.7 683,486 - DDA3937_RS03095 0.83 -0.9 683,486 - DDA3937_RS03095 0.83 -1.2 683,486 - DDA3937_RS03095 0.83 -1.7 683,486 - DDA3937_RS03095 0.83 -0.6 683,486 - DDA3937_RS03095 0.83 -0.7 683,486 - DDA3937_RS03095 0.83 +0.1 683,593 + -1.0 683,593 + +1.5 683,593 + -1.0 683,614 + -1.1 683,614 + +2.1 683,615 - -0.2 683,634 + -1.0 683,634 + +0.1 683,634 + +1.1 683,634 + -0.0 683,634 + -1.2 683,635 - -2.3
Or see this region's nucleotide sequence