Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS02855

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS02850 and DDA3937_RS02855 are separated by 93 nucleotidesDDA3937_RS02855 and DDA3937_RS02860 are separated by 308 nucleotides DDA3937_RS02850: DDA3937_RS02850 - 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG, at 628,664 to 629,836 _RS02850 DDA3937_RS02855: DDA3937_RS02855 - hypothetical protein, at 629,930 to 630,226 _RS02855 DDA3937_RS02860: DDA3937_RS02860 - pectate lyase, at 630,535 to 631,482 _RS02860 Position (kb) 629 630 631Strain fitness (log2 ratio) -2 -1 0 1at 629.111 kb on - strand, within DDA3937_RS02850at 629.111 kb on - strand, within DDA3937_RS02850at 629.111 kb on - strand, within DDA3937_RS02850at 629.111 kb on - strand, within DDA3937_RS02850at 629.155 kb on + strand, within DDA3937_RS02850at 629.297 kb on + strand, within DDA3937_RS02850at 629.297 kb on + strand, within DDA3937_RS02850at 629.297 kb on + strand, within DDA3937_RS02850at 629.298 kb on - strand, within DDA3937_RS02850at 629.298 kb on - strand, within DDA3937_RS02850at 629.312 kb on + strand, within DDA3937_RS02850at 629.312 kb on + strand, within DDA3937_RS02850at 629.313 kb on - strand, within DDA3937_RS02850at 629.313 kb on - strand, within DDA3937_RS02850at 629.313 kb on - strand, within DDA3937_RS02850at 629.313 kb on - strand, within DDA3937_RS02850at 629.462 kb on + strand, within DDA3937_RS02850at 629.462 kb on + strand, within DDA3937_RS02850at 629.463 kb on - strand, within DDA3937_RS02850at 629.486 kb on + strand, within DDA3937_RS02850at 629.486 kb on + strand, within DDA3937_RS02850at 629.486 kb on + strand, within DDA3937_RS02850at 629.486 kb on + strand, within DDA3937_RS02850at 629.486 kb on + strand, within DDA3937_RS02850at 629.486 kb on + strand, within DDA3937_RS02850at 629.486 kb on + strand, within DDA3937_RS02850at 629.486 kb on + strand, within DDA3937_RS02850at 629.487 kb on - strand, within DDA3937_RS02850at 629.487 kb on - strand, within DDA3937_RS02850at 629.487 kb on - strand, within DDA3937_RS02850at 629.487 kb on - strand, within DDA3937_RS02850at 629.487 kb on - strand, within DDA3937_RS02850at 629.487 kb on - strand, within DDA3937_RS02850at 629.487 kb on - strand, within DDA3937_RS02850at 629.487 kb on - strand, within DDA3937_RS02850at 629.489 kb on - strand, within DDA3937_RS02850at 629.489 kb on - strand, within DDA3937_RS02850at 629.738 kb on + strandat 629.817 kb on + strandat 629.881 kb on + strandat 629.881 kb on + strandat 629.881 kb on + strandat 629.882 kb on - strandat 629.882 kb on - strandat 629.882 kb on - strandat 629.882 kb on - strandat 629.909 kb on + strandat 629.909 kb on + strandat 629.910 kb on - strandat 629.929 kb on + strandat 629.929 kb on + strandat 629.930 kb on - strandat 629.930 kb on - strandat 629.930 kb on - strandat 629.930 kb on - strandat 629.930 kb on - strandat 629.958 kb on + strandat 630.024 kb on - strand, within DDA3937_RS02855at 630.140 kb on - strand, within DDA3937_RS02855at 630.210 kb on - strandat 630.247 kb on - strandat 630.264 kb on - strandat 630.432 kb on - strandat 630.454 kb on - strandat 630.515 kb on - strandat 630.531 kb on + strandat 630.532 kb on - strandat 630.542 kb on - strandat 630.624 kb on + strandat 630.624 kb on + strandat 630.628 kb on - strandat 630.628 kb on - strandat 630.628 kb on - strandat 630.628 kb on - strandat 630.697 kb on - strand, within DDA3937_RS02860at 630.777 kb on + strand, within DDA3937_RS02860at 630.778 kb on - strand, within DDA3937_RS02860at 630.843 kb on + strand, within DDA3937_RS02860at 630.881 kb on - strand, within DDA3937_RS02860at 630.937 kb on + strand, within DDA3937_RS02860at 630.938 kb on - strand, within DDA3937_RS02860at 630.939 kb on + strand, within DDA3937_RS02860at 630.939 kb on + strand, within DDA3937_RS02860at 630.973 kb on + strand, within DDA3937_RS02860at 630.973 kb on + strand, within DDA3937_RS02860at 630.974 kb on - strand, within DDA3937_RS02860at 630.976 kb on - strand, within DDA3937_RS02860at 630.994 kb on + strand, within DDA3937_RS02860at 630.995 kb on - strand, within DDA3937_RS02860at 631.034 kb on - strand, within DDA3937_RS02860at 631.034 kb on - strand, within DDA3937_RS02860at 631.072 kb on - strand, within DDA3937_RS02860at 631.084 kb on + strand, within DDA3937_RS02860at 631.084 kb on + strand, within DDA3937_RS02860at 631.084 kb on + strand, within DDA3937_RS02860at 631.085 kb on - strand, within DDA3937_RS02860at 631.108 kb on - strand, within DDA3937_RS02860at 631.120 kb on + strand, within DDA3937_RS02860at 631.120 kb on + strand, within DDA3937_RS02860at 631.121 kb on - strand, within DDA3937_RS02860at 631.121 kb on - strand, within DDA3937_RS02860at 631.131 kb on + strand, within DDA3937_RS02860at 631.131 kb on + strand, within DDA3937_RS02860at 631.135 kb on + strand, within DDA3937_RS02860at 631.168 kb on + strand, within DDA3937_RS02860at 631.169 kb on - strand, within DDA3937_RS02860at 631.169 kb on - strand, within DDA3937_RS02860at 631.180 kb on + strand, within DDA3937_RS02860at 631.180 kb on + strand, within DDA3937_RS02860at 631.180 kb on + strand, within DDA3937_RS02860at 631.180 kb on + strand, within DDA3937_RS02860at 631.181 kb on - strand, within DDA3937_RS02860at 631.181 kb on - strand, within DDA3937_RS02860at 631.181 kb on - strand, within DDA3937_RS02860at 631.181 kb on - strand, within DDA3937_RS02860at 631.201 kb on + strand, within DDA3937_RS02860at 631.202 kb on - strand, within DDA3937_RS02860at 631.202 kb on - strand, within DDA3937_RS02860at 631.215 kb on + strand, within DDA3937_RS02860at 631.216 kb on - strand, within DDA3937_RS02860

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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629,111 - DDA3937_RS02850 0.38 +1.4
629,111 - DDA3937_RS02850 0.38 +0.4
629,111 - DDA3937_RS02850 0.38 -0.5
629,111 - DDA3937_RS02850 0.38 -0.7
629,155 + DDA3937_RS02850 0.42 -1.8
629,297 + DDA3937_RS02850 0.54 +0.5
629,297 + DDA3937_RS02850 0.54 -0.4
629,297 + DDA3937_RS02850 0.54 -0.0
629,298 - DDA3937_RS02850 0.54 -1.2
629,298 - DDA3937_RS02850 0.54 -0.3
629,312 + DDA3937_RS02850 0.55 -0.2
629,312 + DDA3937_RS02850 0.55 +0.3
629,313 - DDA3937_RS02850 0.55 -0.1
629,313 - DDA3937_RS02850 0.55 -0.8
629,313 - DDA3937_RS02850 0.55 -0.4
629,313 - DDA3937_RS02850 0.55 +0.2
629,462 + DDA3937_RS02850 0.68 -1.1
629,462 + DDA3937_RS02850 0.68 -0.2
629,463 - DDA3937_RS02850 0.68 -0.4
629,486 + DDA3937_RS02850 0.70 -0.4
629,486 + DDA3937_RS02850 0.70 +0.0
629,486 + DDA3937_RS02850 0.70 +0.7
629,486 + DDA3937_RS02850 0.70 -0.1
629,486 + DDA3937_RS02850 0.70 +0.0
629,486 + DDA3937_RS02850 0.70 -0.4
629,486 + DDA3937_RS02850 0.70 +0.9
629,486 + DDA3937_RS02850 0.70 -1.4
629,487 - DDA3937_RS02850 0.70 +0.2
629,487 - DDA3937_RS02850 0.70 -0.3
629,487 - DDA3937_RS02850 0.70 +0.2
629,487 - DDA3937_RS02850 0.70 -0.3
629,487 - DDA3937_RS02850 0.70 +0.3
629,487 - DDA3937_RS02850 0.70 -0.4
629,487 - DDA3937_RS02850 0.70 -0.8
629,487 - DDA3937_RS02850 0.70 +0.4
629,489 - DDA3937_RS02850 0.70 +0.9
629,489 - DDA3937_RS02850 0.70 -0.4
629,738 + -1.2
629,817 + -1.3
629,881 + +0.5
629,881 + +0.4
629,881 + -0.1
629,882 - -0.8
629,882 - -0.6
629,882 - +0.5
629,882 - -0.4
629,909 + +0.5
629,909 + +0.3
629,910 - -0.4
629,929 + -0.7
629,929 + +0.4
629,930 - +0.2
629,930 - +0.4
629,930 - -1.8
629,930 - -1.2
629,930 - -0.7
629,958 + -1.9
630,024 - DDA3937_RS02855 0.32 -1.3
630,140 - DDA3937_RS02855 0.71 -0.9
630,210 - -0.5
630,247 - +0.6
630,264 - -0.0
630,432 - +1.3
630,454 - -0.5
630,515 - +0.4
630,531 + -0.7
630,532 - -2.0
630,542 - +0.4
630,624 + -0.6
630,624 + -1.4
630,628 - -0.5
630,628 - -0.2
630,628 - -0.4
630,628 - -0.4
630,697 - DDA3937_RS02860 0.17 -0.2
630,777 + DDA3937_RS02860 0.26 -0.4
630,778 - DDA3937_RS02860 0.26 -1.5
630,843 + DDA3937_RS02860 0.32 -0.9
630,881 - DDA3937_RS02860 0.36 -0.2
630,937 + DDA3937_RS02860 0.42 -1.8
630,938 - DDA3937_RS02860 0.43 -0.1
630,939 + DDA3937_RS02860 0.43 -0.0
630,939 + DDA3937_RS02860 0.43 +0.4
630,973 + DDA3937_RS02860 0.46 -1.8
630,973 + DDA3937_RS02860 0.46 -1.5
630,974 - DDA3937_RS02860 0.46 +0.5
630,976 - DDA3937_RS02860 0.47 +0.7
630,994 + DDA3937_RS02860 0.48 -0.2
630,995 - DDA3937_RS02860 0.49 -1.2
631,034 - DDA3937_RS02860 0.53 -1.1
631,034 - DDA3937_RS02860 0.53 +0.1
631,072 - DDA3937_RS02860 0.57 -0.7
631,084 + DDA3937_RS02860 0.58 -0.3
631,084 + DDA3937_RS02860 0.58 +0.4
631,084 + DDA3937_RS02860 0.58 -0.2
631,085 - DDA3937_RS02860 0.58 -0.8
631,108 - DDA3937_RS02860 0.60 +0.5
631,120 + DDA3937_RS02860 0.62 -2.3
631,120 + DDA3937_RS02860 0.62 -0.3
631,121 - DDA3937_RS02860 0.62 -1.0
631,121 - DDA3937_RS02860 0.62 -0.8
631,131 + DDA3937_RS02860 0.63 -1.0
631,131 + DDA3937_RS02860 0.63 -0.5
631,135 + DDA3937_RS02860 0.63 +1.2
631,168 + DDA3937_RS02860 0.67 +1.2
631,169 - DDA3937_RS02860 0.67 -1.4
631,169 - DDA3937_RS02860 0.67 -0.7
631,180 + DDA3937_RS02860 0.68 -1.2
631,180 + DDA3937_RS02860 0.68 +0.8
631,180 + DDA3937_RS02860 0.68 +0.4
631,180 + DDA3937_RS02860 0.68 -0.7
631,181 - DDA3937_RS02860 0.68 -1.4
631,181 - DDA3937_RS02860 0.68 -1.1
631,181 - DDA3937_RS02860 0.68 -0.3
631,181 - DDA3937_RS02860 0.68 +0.2
631,201 + DDA3937_RS02860 0.70 -0.1
631,202 - DDA3937_RS02860 0.70 -1.6
631,202 - DDA3937_RS02860 0.70 -1.0
631,215 + DDA3937_RS02860 0.72 -1.0
631,216 - DDA3937_RS02860 0.72 -0.2

Or see this region's nucleotide sequence