Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS02810 and DDA3937_RS02815 are separated by 743 nucleotides DDA3937_RS02815 and DDA3937_RS02820 are separated by 368 nucleotides
DDA3937_RS02810: DDA3937_RS02810 - DedA family protein, at 617,486 to 618,160
_RS02810
DDA3937_RS02815: DDA3937_RS02815 - transcriptional regulator ExuR, at 618,904 to 619,683
_RS02815
DDA3937_RS02820: DDA3937_RS02820 - MFS transporter, at 620,052 to 621,350
_RS02820
Position (kb) 618
619
620 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 617.951 kb on - strand at 617.956 kb on + strand, within DDA3937_RS02810 at 618.071 kb on + strand, within DDA3937_RS02810 at 618.071 kb on + strand, within DDA3937_RS02810 at 618.071 kb on + strand, within DDA3937_RS02810 at 618.072 kb on - strand, within DDA3937_RS02810 at 618.072 kb on - strand, within DDA3937_RS02810 at 618.072 kb on - strand, within DDA3937_RS02810 at 618.072 kb on - strand, within DDA3937_RS02810 at 618.072 kb on - strand, within DDA3937_RS02810 at 618.075 kb on + strand, within DDA3937_RS02810 at 618.075 kb on + strand, within DDA3937_RS02810 at 618.075 kb on + strand, within DDA3937_RS02810 at 618.075 kb on + strand, within DDA3937_RS02810 at 618.076 kb on - strand, within DDA3937_RS02810 at 618.076 kb on - strand, within DDA3937_RS02810 at 618.076 kb on - strand, within DDA3937_RS02810 at 618.135 kb on + strand at 618.135 kb on + strand at 618.135 kb on + strand at 618.136 kb on - strand at 618.149 kb on - strand at 618.149 kb on - strand at 618.152 kb on + strand at 618.152 kb on + strand at 618.152 kb on + strand at 618.152 kb on + strand at 618.152 kb on + strand at 618.152 kb on + strand at 618.152 kb on + strand at 618.152 kb on + strand at 618.152 kb on + strand at 618.152 kb on + strand at 618.153 kb on - strand at 618.153 kb on - strand at 618.153 kb on - strand at 618.153 kb on - strand at 618.153 kb on - strand at 618.153 kb on - strand at 618.153 kb on - strand at 618.153 kb on - strand at 618.153 kb on - strand at 618.153 kb on - strand at 618.153 kb on - strand at 618.153 kb on - strand at 618.153 kb on - strand at 618.154 kb on + strand at 618.154 kb on + strand at 618.155 kb on - strand at 618.155 kb on - strand at 618.155 kb on - strand at 618.303 kb on - strand at 618.303 kb on - strand at 618.338 kb on + strand at 618.338 kb on + strand at 618.338 kb on + strand at 618.338 kb on + strand at 618.339 kb on - strand at 618.339 kb on - strand at 618.339 kb on - strand at 618.339 kb on - strand at 618.339 kb on - strand at 618.339 kb on - strand at 618.339 kb on - strand at 618.339 kb on - strand at 618.339 kb on - strand at 618.339 kb on - strand at 618.339 kb on - strand at 618.341 kb on + strand at 618.341 kb on + strand at 618.341 kb on + strand at 618.356 kb on + strand at 618.356 kb on + strand at 618.357 kb on - strand at 618.361 kb on + strand at 618.361 kb on + strand at 618.361 kb on + strand at 618.361 kb on + strand at 618.361 kb on + strand at 618.386 kb on + strand at 618.480 kb on + strand at 618.551 kb on + strand at 618.616 kb on - strand at 618.618 kb on - strand at 618.713 kb on + strand at 618.718 kb on + strand at 618.718 kb on + strand at 618.773 kb on + strand at 618.773 kb on + strand at 618.774 kb on - strand at 618.774 kb on - strand at 618.787 kb on + strand at 618.788 kb on - strand at 619.134 kb on + strand, within DDA3937_RS02815 at 619.134 kb on + strand, within DDA3937_RS02815 at 619.135 kb on - strand, within DDA3937_RS02815 at 619.369 kb on + strand at 619.502 kb on + strand, within DDA3937_RS02815 at 619.572 kb on + strand, within DDA3937_RS02815 at 619.573 kb on - strand, within DDA3937_RS02815 at 619.696 kb on + strand at 619.697 kb on - strand at 619.697 kb on - strand at 619.697 kb on - strand at 619.697 kb on - strand at 619.701 kb on + strand at 619.748 kb on - strand at 619.766 kb on + strand at 619.766 kb on + strand at 619.766 kb on + strand at 619.766 kb on + strand at 619.766 kb on + strand at 619.767 kb on - strand at 619.767 kb on - strand at 619.767 kb on - strand at 619.777 kb on + strand at 619.778 kb on - strand at 619.778 kb on - strand at 619.825 kb on - strand at 619.883 kb on + strand at 619.891 kb on + strand at 619.892 kb on - strand at 619.892 kb on - strand at 619.893 kb on + strand at 619.893 kb on + strand at 619.893 kb on + strand at 619.894 kb on - strand at 619.894 kb on - strand at 619.894 kb on - strand at 619.928 kb on + strand at 619.928 kb on + strand at 619.929 kb on - strand at 619.962 kb on + strand at 619.962 kb on + strand at 619.962 kb on + strand at 619.962 kb on + strand at 619.962 kb on + strand at 619.963 kb on - strand at 619.975 kb on - strand at 620.053 kb on + strand at 620.053 kb on + strand at 620.053 kb on + strand at 620.053 kb on + strand at 620.087 kb on + strand at 620.087 kb on + strand at 620.087 kb on + strand at 620.087 kb on + strand at 620.087 kb on + strand at 620.087 kb on + strand at 620.087 kb on + strand at 620.119 kb on - strand at 620.155 kb on - strand at 620.156 kb on + strand at 620.157 kb on - strand at 620.157 kb on - strand at 620.181 kb on - strand at 620.229 kb on - strand, within DDA3937_RS02820 at 620.310 kb on - strand, within DDA3937_RS02820 at 620.373 kb on - strand, within DDA3937_RS02820 at 620.374 kb on + strand, within DDA3937_RS02820 at 620.374 kb on + strand, within DDA3937_RS02820 at 620.374 kb on + strand, within DDA3937_RS02820 at 620.473 kb on + strand, within DDA3937_RS02820 at 620.474 kb on - strand, within DDA3937_RS02820 at 620.474 kb on - strand, within DDA3937_RS02820 at 620.497 kb on + strand, within DDA3937_RS02820 at 620.497 kb on + strand, within DDA3937_RS02820 at 620.498 kb on - strand, within DDA3937_RS02820 at 620.510 kb on + strand, within DDA3937_RS02820 at 620.511 kb on - strand, within DDA3937_RS02820 at 620.618 kb on + strand, within DDA3937_RS02820
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 617,951 - +1.2 617,956 + DDA3937_RS02810 0.70 +0.2 618,071 + DDA3937_RS02810 0.87 +0.7 618,071 + DDA3937_RS02810 0.87 -0.2 618,071 + DDA3937_RS02810 0.87 +0.7 618,072 - DDA3937_RS02810 0.87 +0.2 618,072 - DDA3937_RS02810 0.87 +0.2 618,072 - DDA3937_RS02810 0.87 +0.6 618,072 - DDA3937_RS02810 0.87 -0.2 618,072 - DDA3937_RS02810 0.87 -0.2 618,075 + DDA3937_RS02810 0.87 -0.6 618,075 + DDA3937_RS02810 0.87 -0.3 618,075 + DDA3937_RS02810 0.87 -0.8 618,075 + DDA3937_RS02810 0.87 -1.1 618,076 - DDA3937_RS02810 0.87 -0.0 618,076 - DDA3937_RS02810 0.87 +0.8 618,076 - DDA3937_RS02810 0.87 +0.5 618,135 + +0.7 618,135 + -0.4 618,135 + -0.2 618,136 - +0.3 618,149 - -0.1 618,149 - -1.4 618,152 + -0.8 618,152 + -2.1 618,152 + -1.4 618,152 + -1.1 618,152 + +0.2 618,152 + -0.5 618,152 + +0.2 618,152 + +0.0 618,152 + +1.0 618,152 + -0.0 618,153 - +0.1 618,153 - +1.5 618,153 - -0.0 618,153 - +1.2 618,153 - +0.3 618,153 - -0.1 618,153 - -0.3 618,153 - +1.8 618,153 - -1.0 618,153 - +0.8 618,153 - +3.2 618,153 - -0.8 618,153 - -0.3 618,154 + -0.8 618,154 + -0.1 618,155 - +0.3 618,155 - -1.1 618,155 - +0.6 618,303 - +0.2 618,303 - +2.8 618,338 + -0.6 618,338 + -0.6 618,338 + -0.4 618,338 + +0.4 618,339 - -1.1 618,339 - +0.1 618,339 - -2.5 618,339 - +1.2 618,339 - -0.6 618,339 - +0.2 618,339 - -0.0 618,339 - +0.7 618,339 - -0.8 618,339 - -0.4 618,339 - -0.5 618,341 + -0.2 618,341 + -0.1 618,341 + -1.1 618,356 + +0.7 618,356 + -1.3 618,357 - +0.2 618,361 + -1.6 618,361 + -0.1 618,361 + -1.8 618,361 + +0.2 618,361 + -0.3 618,386 + +0.5 618,480 + -0.0 618,551 + -0.2 618,616 - +1.2 618,618 - +0.2 618,713 + +0.1 618,718 + -0.7 618,718 + +1.1 618,773 + -0.7 618,773 + +0.7 618,774 - +0.6 618,774 - -0.1 618,787 + -0.5 618,788 - -1.1 619,134 + DDA3937_RS02815 0.29 -1.1 619,134 + DDA3937_RS02815 0.29 +0.1 619,135 - DDA3937_RS02815 0.30 -1.1 619,369 + +1.8 619,502 + DDA3937_RS02815 0.77 -1.8 619,572 + DDA3937_RS02815 0.86 -0.4 619,573 - DDA3937_RS02815 0.86 -0.6 619,696 + -0.3 619,697 - -0.1 619,697 - -0.8 619,697 - -0.2 619,697 - -0.0 619,701 + +0.9 619,748 - -1.2 619,766 + -0.6 619,766 + -2.0 619,766 + -0.3 619,766 + -0.6 619,766 + -0.1 619,767 - -0.1 619,767 - +0.3 619,767 - -0.7 619,777 + -1.2 619,778 - -0.8 619,778 - -0.8 619,825 - +0.2 619,883 + -0.3 619,891 + +0.8 619,892 - +1.0 619,892 - +1.7 619,893 + -0.0 619,893 + +1.2 619,893 + -1.3 619,894 - -0.8 619,894 - -0.3 619,894 - -0.5 619,928 + -1.0 619,928 + -0.2 619,929 - -0.8 619,962 + -0.1 619,962 + -0.8 619,962 + -0.0 619,962 + -0.1 619,962 + +0.1 619,963 - -0.9 619,975 - -0.2 620,053 + -0.8 620,053 + +0.4 620,053 + +1.2 620,053 + -0.8 620,087 + +2.3 620,087 + -0.1 620,087 + -0.3 620,087 + +0.2 620,087 + -0.3 620,087 + -1.0 620,087 + +0.3 620,119 - +1.2 620,155 - -0.7 620,156 + -0.1 620,157 - +0.3 620,157 - -0.1 620,181 - +0.1 620,229 - DDA3937_RS02820 0.14 -0.8 620,310 - DDA3937_RS02820 0.20 +0.2 620,373 - DDA3937_RS02820 0.25 +0.1 620,374 + DDA3937_RS02820 0.25 -0.5 620,374 + DDA3937_RS02820 0.25 +0.2 620,374 + DDA3937_RS02820 0.25 -0.0 620,473 + DDA3937_RS02820 0.32 -0.2 620,474 - DDA3937_RS02820 0.32 -0.8 620,474 - DDA3937_RS02820 0.32 -1.1 620,497 + DDA3937_RS02820 0.34 +0.1 620,497 + DDA3937_RS02820 0.34 +0.1 620,498 - DDA3937_RS02820 0.34 +0.3 620,510 + DDA3937_RS02820 0.35 -0.3 620,511 - DDA3937_RS02820 0.35 +1.2 620,618 + DDA3937_RS02820 0.44 +0.6
Or see this region's nucleotide sequence