Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS02805

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS02790 and DDA3937_RS02795 overlap by 4 nucleotidesDDA3937_RS02795 and DDA3937_RS02800 are separated by 3 nucleotidesDDA3937_RS02800 and DDA3937_RS02805 are separated by 198 nucleotidesDDA3937_RS02805 and DDA3937_RS02810 are separated by 3 nucleotides DDA3937_RS02790: DDA3937_RS02790 - YqjK-like family protein, at 615,924 to 616,229 _RS02790 DDA3937_RS02795: DDA3937_RS02795 - phage holin family protein, at 616,226 to 616,624 _RS02795 DDA3937_RS02800: DDA3937_RS02800 - DUF883 domain-containing protein, at 616,628 to 616,933 _RS02800 DDA3937_RS02805: DDA3937_RS02805 - EnvZ/OmpR regulon moderator MzrA, at 617,132 to 617,482 _RS02805 DDA3937_RS02810: DDA3937_RS02810 - DedA family protein, at 617,486 to 618,160 _RS02810 Position (kb) 617 618Strain fitness (log2 ratio) -2 -1 0 1 2 3at 616.385 kb on + strand, within DDA3937_RS02795at 616.385 kb on + strand, within DDA3937_RS02795at 616.385 kb on + strand, within DDA3937_RS02795at 616.385 kb on + strandat 616.661 kb on - strand, within DDA3937_RS02800at 616.702 kb on + strand, within DDA3937_RS02800at 616.707 kb on - strand, within DDA3937_RS02800at 616.843 kb on + strand, within DDA3937_RS02800at 616.844 kb on - strand, within DDA3937_RS02800at 616.860 kb on - strand, within DDA3937_RS02800at 616.860 kb on - strand, within DDA3937_RS02800at 616.947 kb on + strandat 616.984 kb on - strandat 616.987 kb on + strandat 616.987 kb on + strandat 616.987 kb on + strandat 616.987 kb on + strandat 616.987 kb on + strandat 616.987 kb on + strandat 616.987 kb on + strandat 616.987 kb on + strandat 616.987 kb on + strandat 616.987 kb on + strandat 616.987 kb on + strandat 616.988 kb on - strandat 616.988 kb on - strandat 616.988 kb on - strandat 616.988 kb on - strandat 616.988 kb on - strandat 616.988 kb on - strandat 616.988 kb on - strandat 616.988 kb on - strandat 616.988 kb on - strandat 616.988 kb on - strandat 617.024 kb on - strandat 617.087 kb on + strandat 617.088 kb on - strandat 617.088 kb on - strandat 617.165 kb on - strandat 617.165 kb on - strandat 617.187 kb on + strand, within DDA3937_RS02805at 617.207 kb on + strand, within DDA3937_RS02805at 617.207 kb on + strand, within DDA3937_RS02805at 617.207 kb on + strand, within DDA3937_RS02805at 617.208 kb on - strand, within DDA3937_RS02805at 617.208 kb on - strand, within DDA3937_RS02805at 617.275 kb on + strand, within DDA3937_RS02805at 617.276 kb on - strand, within DDA3937_RS02805at 617.322 kb on + strand, within DDA3937_RS02805at 617.322 kb on + strand, within DDA3937_RS02805at 617.322 kb on + strand, within DDA3937_RS02805at 617.322 kb on + strand, within DDA3937_RS02805at 617.323 kb on - strand, within DDA3937_RS02805at 617.610 kb on + strand, within DDA3937_RS02810at 617.610 kb on + strand, within DDA3937_RS02810at 617.622 kb on - strand, within DDA3937_RS02810at 617.902 kb on - strand, within DDA3937_RS02810at 617.951 kb on - strandat 617.956 kb on + strand, within DDA3937_RS02810at 618.071 kb on + strand, within DDA3937_RS02810at 618.071 kb on + strand, within DDA3937_RS02810at 618.071 kb on + strand, within DDA3937_RS02810at 618.072 kb on - strand, within DDA3937_RS02810at 618.072 kb on - strand, within DDA3937_RS02810at 618.072 kb on - strand, within DDA3937_RS02810at 618.072 kb on - strand, within DDA3937_RS02810at 618.072 kb on - strand, within DDA3937_RS02810at 618.075 kb on + strand, within DDA3937_RS02810at 618.075 kb on + strand, within DDA3937_RS02810at 618.075 kb on + strand, within DDA3937_RS02810at 618.075 kb on + strand, within DDA3937_RS02810at 618.076 kb on - strand, within DDA3937_RS02810at 618.076 kb on - strand, within DDA3937_RS02810at 618.076 kb on - strand, within DDA3937_RS02810at 618.135 kb on + strandat 618.135 kb on + strandat 618.135 kb on + strandat 618.136 kb on - strandat 618.149 kb on - strandat 618.149 kb on - strandat 618.152 kb on + strandat 618.152 kb on + strandat 618.152 kb on + strandat 618.152 kb on + strandat 618.152 kb on + strandat 618.152 kb on + strandat 618.152 kb on + strandat 618.152 kb on + strandat 618.152 kb on + strandat 618.152 kb on + strandat 618.153 kb on - strandat 618.153 kb on - strandat 618.153 kb on - strandat 618.153 kb on - strandat 618.153 kb on - strandat 618.153 kb on - strandat 618.153 kb on - strandat 618.153 kb on - strandat 618.153 kb on - strandat 618.153 kb on - strandat 618.153 kb on - strandat 618.153 kb on - strandat 618.153 kb on - strandat 618.154 kb on + strandat 618.154 kb on + strandat 618.155 kb on - strandat 618.155 kb on - strandat 618.155 kb on - strandat 618.303 kb on - strandat 618.303 kb on - strandat 618.338 kb on + strandat 618.338 kb on + strandat 618.338 kb on + strandat 618.338 kb on + strandat 618.339 kb on - strandat 618.339 kb on - strandat 618.339 kb on - strandat 618.339 kb on - strandat 618.339 kb on - strandat 618.339 kb on - strandat 618.339 kb on - strandat 618.339 kb on - strandat 618.339 kb on - strandat 618.339 kb on - strandat 618.339 kb on - strandat 618.341 kb on + strandat 618.341 kb on + strandat 618.341 kb on + strandat 618.356 kb on + strandat 618.356 kb on + strandat 618.357 kb on - strandat 618.361 kb on + strandat 618.361 kb on + strandat 618.361 kb on + strandat 618.361 kb on + strandat 618.361 kb on + strandat 618.386 kb on + strandat 618.480 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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616,385 + DDA3937_RS02795 0.40 -1.0
616,385 + DDA3937_RS02795 0.40 -1.4
616,385 + DDA3937_RS02795 0.40 -1.1
616,385 + -0.8
616,661 - DDA3937_RS02800 0.11 -0.4
616,702 + DDA3937_RS02800 0.24 -0.5
616,707 - DDA3937_RS02800 0.26 +0.9
616,843 + DDA3937_RS02800 0.70 -1.6
616,844 - DDA3937_RS02800 0.71 -0.2
616,860 - DDA3937_RS02800 0.76 -0.4
616,860 - DDA3937_RS02800 0.76 -0.8
616,947 + +2.2
616,984 - +0.0
616,987 + -0.1
616,987 + -0.0
616,987 + -2.0
616,987 + +0.6
616,987 + +0.8
616,987 + -0.6
616,987 + +0.4
616,987 + -0.0
616,987 + -0.4
616,987 + +0.5
616,987 + +0.4
616,988 - -1.0
616,988 - -1.5
616,988 - +0.8
616,988 - -0.3
616,988 - -0.5
616,988 - -0.5
616,988 - +0.4
616,988 - -1.6
616,988 - -2.1
616,988 - -1.0
617,024 - -0.5
617,087 + +0.0
617,088 - -1.0
617,088 - -0.3
617,165 - +0.6
617,165 - -0.8
617,187 + DDA3937_RS02805 0.16 -0.6
617,207 + DDA3937_RS02805 0.21 -0.1
617,207 + DDA3937_RS02805 0.21 -1.4
617,207 + DDA3937_RS02805 0.21 -0.9
617,208 - DDA3937_RS02805 0.22 -1.4
617,208 - DDA3937_RS02805 0.22 -0.3
617,275 + DDA3937_RS02805 0.41 -1.0
617,276 - DDA3937_RS02805 0.41 -1.0
617,322 + DDA3937_RS02805 0.54 +1.0
617,322 + DDA3937_RS02805 0.54 -0.7
617,322 + DDA3937_RS02805 0.54 -1.0
617,322 + DDA3937_RS02805 0.54 -0.9
617,323 - DDA3937_RS02805 0.54 +0.2
617,610 + DDA3937_RS02810 0.18 -0.1
617,610 + DDA3937_RS02810 0.18 -1.8
617,622 - DDA3937_RS02810 0.20 -1.0
617,902 - DDA3937_RS02810 0.62 +0.6
617,951 - +1.2
617,956 + DDA3937_RS02810 0.70 +0.2
618,071 + DDA3937_RS02810 0.87 +0.7
618,071 + DDA3937_RS02810 0.87 -0.2
618,071 + DDA3937_RS02810 0.87 +0.7
618,072 - DDA3937_RS02810 0.87 +0.2
618,072 - DDA3937_RS02810 0.87 +0.2
618,072 - DDA3937_RS02810 0.87 +0.6
618,072 - DDA3937_RS02810 0.87 -0.2
618,072 - DDA3937_RS02810 0.87 -0.2
618,075 + DDA3937_RS02810 0.87 -0.6
618,075 + DDA3937_RS02810 0.87 -0.3
618,075 + DDA3937_RS02810 0.87 -0.8
618,075 + DDA3937_RS02810 0.87 -1.1
618,076 - DDA3937_RS02810 0.87 -0.0
618,076 - DDA3937_RS02810 0.87 +0.8
618,076 - DDA3937_RS02810 0.87 +0.5
618,135 + +0.7
618,135 + -0.4
618,135 + -0.2
618,136 - +0.3
618,149 - -0.1
618,149 - -1.4
618,152 + -0.8
618,152 + -2.1
618,152 + -1.4
618,152 + -1.1
618,152 + +0.2
618,152 + -0.5
618,152 + +0.2
618,152 + +0.0
618,152 + +1.0
618,152 + -0.0
618,153 - +0.1
618,153 - +1.5
618,153 - -0.0
618,153 - +1.2
618,153 - +0.3
618,153 - -0.1
618,153 - -0.3
618,153 - +1.8
618,153 - -1.0
618,153 - +0.8
618,153 - +3.2
618,153 - -0.8
618,153 - -0.3
618,154 + -0.8
618,154 + -0.1
618,155 - +0.3
618,155 - -1.1
618,155 - +0.6
618,303 - +0.2
618,303 - +2.8
618,338 + -0.6
618,338 + -0.6
618,338 + -0.4
618,338 + +0.4
618,339 - -1.1
618,339 - +0.1
618,339 - -2.5
618,339 - +1.2
618,339 - -0.6
618,339 - +0.2
618,339 - -0.0
618,339 - +0.7
618,339 - -0.8
618,339 - -0.4
618,339 - -0.5
618,341 + -0.2
618,341 + -0.1
618,341 + -1.1
618,356 + +0.7
618,356 + -1.3
618,357 - +0.2
618,361 + -1.6
618,361 + -0.1
618,361 + -1.8
618,361 + +0.2
618,361 + -0.3
618,386 + +0.5
618,480 + -0.0

Or see this region's nucleotide sequence