Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS02790 and DDA3937_RS02795 overlap by 4 nucleotides DDA3937_RS02795 and DDA3937_RS02800 are separated by 3 nucleotides DDA3937_RS02800 and DDA3937_RS02805 are separated by 198 nucleotides DDA3937_RS02805 and DDA3937_RS02810 are separated by 3 nucleotides
DDA3937_RS02790: DDA3937_RS02790 - YqjK-like family protein, at 615,924 to 616,229
_RS02790
DDA3937_RS02795: DDA3937_RS02795 - phage holin family protein, at 616,226 to 616,624
_RS02795
DDA3937_RS02800: DDA3937_RS02800 - DUF883 domain-containing protein, at 616,628 to 616,933
_RS02800
DDA3937_RS02805: DDA3937_RS02805 - EnvZ/OmpR regulon moderator MzrA, at 617,132 to 617,482
_RS02805
DDA3937_RS02810: DDA3937_RS02810 - DedA family protein, at 617,486 to 618,160
_RS02810
Position (kb) 616
617 Strain fitness (log2 ratio) -2
-1
0
1
2 at 615.628 kb on - strand at 615.638 kb on - strand at 615.638 kb on - strand at 615.693 kb on - strand at 615.693 kb on - strand at 615.721 kb on + strand at 615.721 kb on + strand at 615.721 kb on + strand at 615.721 kb on + strand at 615.721 kb on + strand at 615.722 kb on - strand at 615.722 kb on - strand at 615.722 kb on - strand at 615.722 kb on - strand at 615.724 kb on + strand at 615.725 kb on - strand at 615.768 kb on + strand at 615.824 kb on + strand at 615.824 kb on + strand at 615.839 kb on + strand at 615.840 kb on - strand at 615.840 kb on - strand at 615.863 kb on + strand at 615.954 kb on + strand at 615.955 kb on - strand, within DDA3937_RS02790 at 615.966 kb on + strand, within DDA3937_RS02790 at 616.044 kb on + strand, within DDA3937_RS02790 at 616.385 kb on + strand, within DDA3937_RS02795 at 616.385 kb on + strand, within DDA3937_RS02795 at 616.385 kb on + strand, within DDA3937_RS02795 at 616.385 kb on + strand at 616.661 kb on - strand, within DDA3937_RS02800 at 616.702 kb on + strand, within DDA3937_RS02800 at 616.707 kb on - strand, within DDA3937_RS02800 at 616.843 kb on + strand, within DDA3937_RS02800 at 616.844 kb on - strand, within DDA3937_RS02800 at 616.860 kb on - strand, within DDA3937_RS02800 at 616.860 kb on - strand, within DDA3937_RS02800 at 616.947 kb on + strand at 616.984 kb on - strand at 616.987 kb on + strand at 616.987 kb on + strand at 616.987 kb on + strand at 616.987 kb on + strand at 616.987 kb on + strand at 616.987 kb on + strand at 616.987 kb on + strand at 616.987 kb on + strand at 616.987 kb on + strand at 616.987 kb on + strand at 616.987 kb on + strand at 616.988 kb on - strand at 616.988 kb on - strand at 616.988 kb on - strand at 616.988 kb on - strand at 616.988 kb on - strand at 616.988 kb on - strand at 616.988 kb on - strand at 616.988 kb on - strand at 616.988 kb on - strand at 616.988 kb on - strand at 617.024 kb on - strand at 617.087 kb on + strand at 617.088 kb on - strand at 617.088 kb on - strand at 617.165 kb on - strand at 617.165 kb on - strand at 617.187 kb on + strand, within DDA3937_RS02805 at 617.207 kb on + strand, within DDA3937_RS02805 at 617.207 kb on + strand, within DDA3937_RS02805 at 617.207 kb on + strand, within DDA3937_RS02805 at 617.208 kb on - strand, within DDA3937_RS02805 at 617.208 kb on - strand, within DDA3937_RS02805 at 617.275 kb on + strand, within DDA3937_RS02805 at 617.276 kb on - strand, within DDA3937_RS02805 at 617.322 kb on + strand, within DDA3937_RS02805 at 617.322 kb on + strand, within DDA3937_RS02805 at 617.322 kb on + strand, within DDA3937_RS02805 at 617.322 kb on + strand, within DDA3937_RS02805 at 617.323 kb on - strand, within DDA3937_RS02805 at 617.610 kb on + strand, within DDA3937_RS02810 at 617.610 kb on + strand, within DDA3937_RS02810 at 617.622 kb on - strand, within DDA3937_RS02810 at 617.902 kb on - strand, within DDA3937_RS02810
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 615,628 - +0.1 615,638 - +0.8 615,638 - -0.8 615,693 - -0.0 615,693 - +0.0 615,721 + +0.3 615,721 + +1.2 615,721 + -0.3 615,721 + +0.0 615,721 + +0.2 615,722 - -0.8 615,722 - +0.9 615,722 - -0.7 615,722 - -0.0 615,724 + +1.1 615,725 - -0.8 615,768 + +1.4 615,824 + +0.1 615,824 + +0.0 615,839 + +0.7 615,840 - -0.3 615,840 - +0.0 615,863 + -0.0 615,954 + -0.0 615,955 - DDA3937_RS02790 0.10 -1.5 615,966 + DDA3937_RS02790 0.14 +1.2 616,044 + DDA3937_RS02790 0.39 +1.3 616,385 + DDA3937_RS02795 0.40 -1.0 616,385 + DDA3937_RS02795 0.40 -1.4 616,385 + DDA3937_RS02795 0.40 -1.1 616,385 + -0.8 616,661 - DDA3937_RS02800 0.11 -0.4 616,702 + DDA3937_RS02800 0.24 -0.5 616,707 - DDA3937_RS02800 0.26 +0.9 616,843 + DDA3937_RS02800 0.70 -1.6 616,844 - DDA3937_RS02800 0.71 -0.2 616,860 - DDA3937_RS02800 0.76 -0.4 616,860 - DDA3937_RS02800 0.76 -0.8 616,947 + +2.2 616,984 - +0.0 616,987 + -0.1 616,987 + -0.0 616,987 + -2.0 616,987 + +0.6 616,987 + +0.8 616,987 + -0.6 616,987 + +0.4 616,987 + -0.0 616,987 + -0.4 616,987 + +0.5 616,987 + +0.4 616,988 - -1.0 616,988 - -1.5 616,988 - +0.8 616,988 - -0.3 616,988 - -0.5 616,988 - -0.5 616,988 - +0.4 616,988 - -1.6 616,988 - -2.1 616,988 - -1.0 617,024 - -0.5 617,087 + +0.0 617,088 - -1.0 617,088 - -0.3 617,165 - +0.6 617,165 - -0.8 617,187 + DDA3937_RS02805 0.16 -0.6 617,207 + DDA3937_RS02805 0.21 -0.1 617,207 + DDA3937_RS02805 0.21 -1.4 617,207 + DDA3937_RS02805 0.21 -0.9 617,208 - DDA3937_RS02805 0.22 -1.4 617,208 - DDA3937_RS02805 0.22 -0.3 617,275 + DDA3937_RS02805 0.41 -1.0 617,276 - DDA3937_RS02805 0.41 -1.0 617,322 + DDA3937_RS02805 0.54 +1.0 617,322 + DDA3937_RS02805 0.54 -0.7 617,322 + DDA3937_RS02805 0.54 -1.0 617,322 + DDA3937_RS02805 0.54 -0.9 617,323 - DDA3937_RS02805 0.54 +0.2 617,610 + DDA3937_RS02810 0.18 -0.1 617,610 + DDA3937_RS02810 0.18 -1.8 617,622 - DDA3937_RS02810 0.20 -1.0 617,902 - DDA3937_RS02810 0.62 +0.6
Or see this region's nucleotide sequence