Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS02720 and DDA3937_RS02725 are separated by 442 nucleotides DDA3937_RS02725 and DDA3937_RS02730 are separated by 194 nucleotides DDA3937_RS02730 and DDA3937_RS02735 are separated by 50 nucleotides
DDA3937_RS02720: DDA3937_RS02720 - aspartate ammonia-lyase, at 601,115 to 602,554
_RS02720
DDA3937_RS02725: DDA3937_RS02725 - FxsA family protein, at 602,997 to 603,524
_RS02725
DDA3937_RS02730: DDA3937_RS02730 - co-chaperone GroES, at 603,719 to 604,012
_RS02730
DDA3937_RS02735: DDA3937_RS02735 - chaperonin GroEL, at 604,063 to 605,709
_RS02735
Position (kb) 602
603
604 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 602.054 kb on + strand, within DDA3937_RS02720 at 602.085 kb on + strand, within DDA3937_RS02720 at 602.085 kb on + strand, within DDA3937_RS02720 at 602.086 kb on - strand, within DDA3937_RS02720 at 602.086 kb on - strand, within DDA3937_RS02720 at 602.086 kb on - strand, within DDA3937_RS02720 at 602.086 kb on - strand, within DDA3937_RS02720 at 602.086 kb on - strand, within DDA3937_RS02720 at 602.170 kb on - strand, within DDA3937_RS02720 at 602.170 kb on - strand, within DDA3937_RS02720 at 602.306 kb on + strand, within DDA3937_RS02720 at 602.306 kb on + strand, within DDA3937_RS02720 at 602.307 kb on - strand, within DDA3937_RS02720 at 602.307 kb on - strand, within DDA3937_RS02720 at 602.351 kb on + strand, within DDA3937_RS02720 at 602.351 kb on + strand, within DDA3937_RS02720 at 602.352 kb on - strand, within DDA3937_RS02720 at 602.399 kb on + strand, within DDA3937_RS02720 at 602.399 kb on + strand, within DDA3937_RS02720 at 602.400 kb on - strand, within DDA3937_RS02720 at 602.412 kb on - strand at 602.449 kb on + strand at 602.451 kb on + strand at 602.451 kb on + strand at 602.451 kb on + strand at 602.451 kb on + strand at 602.451 kb on + strand at 602.451 kb on + strand at 602.451 kb on + strand at 602.451 kb on + strand at 602.451 kb on + strand at 602.451 kb on + strand at 602.452 kb on - strand at 602.452 kb on - strand at 602.452 kb on - strand at 602.452 kb on - strand at 602.487 kb on + strand at 602.488 kb on - strand at 602.490 kb on + strand at 602.490 kb on + strand at 602.490 kb on + strand at 602.490 kb on + strand at 602.490 kb on + strand at 602.490 kb on + strand at 602.490 kb on + strand at 602.490 kb on + strand at 602.490 kb on + strand at 602.490 kb on + strand at 602.491 kb on - strand at 602.491 kb on - strand at 602.491 kb on - strand at 602.491 kb on - strand at 602.491 kb on - strand at 602.519 kb on + strand at 602.519 kb on + strand at 602.519 kb on + strand at 602.520 kb on - strand at 602.520 kb on - strand at 602.520 kb on - strand at 602.520 kb on - strand at 602.520 kb on - strand at 602.546 kb on - strand at 602.546 kb on - strand at 602.546 kb on - strand at 602.568 kb on + strand at 602.568 kb on + strand at 602.568 kb on + strand at 602.568 kb on + strand at 602.590 kb on + strand at 602.591 kb on - strand at 602.591 kb on - strand at 602.597 kb on + strand at 602.597 kb on + strand at 602.598 kb on - strand at 602.598 kb on - strand at 602.598 kb on - strand at 602.633 kb on - strand at 602.657 kb on + strand at 602.658 kb on - strand at 602.674 kb on - strand at 602.703 kb on - strand at 602.703 kb on - strand at 602.703 kb on - strand at 602.723 kb on + strand at 602.724 kb on - strand at 602.724 kb on - strand at 602.774 kb on + strand at 602.774 kb on + strand at 602.774 kb on + strand at 602.774 kb on + strand at 602.774 kb on + strand at 602.775 kb on - strand at 602.775 kb on - strand at 602.810 kb on + strand at 602.843 kb on + strand at 602.843 kb on + strand at 602.844 kb on - strand at 602.860 kb on + strand at 602.860 kb on + strand at 602.861 kb on - strand at 602.861 kb on - strand at 602.861 kb on - strand at 602.862 kb on + strand at 602.862 kb on + strand at 602.862 kb on + strand at 602.863 kb on - strand at 602.863 kb on - strand at 602.867 kb on + strand at 602.867 kb on + strand at 602.867 kb on + strand at 602.867 kb on + strand at 602.867 kb on + strand at 602.867 kb on + strand at 602.867 kb on + strand at 602.868 kb on - strand at 602.868 kb on - strand at 602.868 kb on - strand at 602.868 kb on - strand at 602.868 kb on - strand at 602.868 kb on - strand at 602.868 kb on - strand at 602.872 kb on + strand at 602.872 kb on + strand at 602.873 kb on - strand at 602.880 kb on + strand at 602.881 kb on - strand at 602.890 kb on + strand at 602.890 kb on + strand at 602.890 kb on + strand at 602.890 kb on + strand at 602.891 kb on - strand at 602.899 kb on - strand at 602.899 kb on - strand at 602.931 kb on + strand at 602.931 kb on + strand at 602.934 kb on + strand at 602.972 kb on + strand at 602.972 kb on + strand at 602.972 kb on + strand at 602.972 kb on + strand at 602.976 kb on + strand at 602.976 kb on + strand at 602.977 kb on - strand at 602.977 kb on - strand at 603.036 kb on + strand at 603.223 kb on + strand, within DDA3937_RS02725 at 603.224 kb on - strand, within DDA3937_RS02725 at 603.289 kb on + strand, within DDA3937_RS02725 at 603.290 kb on - strand, within DDA3937_RS02725 at 603.583 kb on + strand at 603.637 kb on + strand at 603.637 kb on + strand at 603.637 kb on + strand at 603.637 kb on + strand at 603.637 kb on + strand at 603.637 kb on + strand at 603.637 kb on + strand at 603.678 kb on + strand at 603.683 kb on + strand at 604.020 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 602,054 + DDA3937_RS02720 0.65 -0.7 602,085 + DDA3937_RS02720 0.67 +1.6 602,085 + DDA3937_RS02720 0.67 +0.8 602,086 - DDA3937_RS02720 0.67 +0.8 602,086 - DDA3937_RS02720 0.67 -3.0 602,086 - DDA3937_RS02720 0.67 -0.8 602,086 - DDA3937_RS02720 0.67 -1.4 602,086 - DDA3937_RS02720 0.67 -0.9 602,170 - DDA3937_RS02720 0.73 -0.4 602,170 - DDA3937_RS02720 0.73 -0.3 602,306 + DDA3937_RS02720 0.83 -0.6 602,306 + DDA3937_RS02720 0.83 -0.8 602,307 - DDA3937_RS02720 0.83 -0.8 602,307 - DDA3937_RS02720 0.83 +1.2 602,351 + DDA3937_RS02720 0.86 -1.5 602,351 + DDA3937_RS02720 0.86 -0.6 602,352 - DDA3937_RS02720 0.86 -0.7 602,399 + DDA3937_RS02720 0.89 -1.1 602,399 + DDA3937_RS02720 0.89 +0.4 602,400 - DDA3937_RS02720 0.89 -0.3 602,412 - -0.2 602,449 + -1.5 602,451 + -0.6 602,451 + -0.6 602,451 + +0.9 602,451 + -0.8 602,451 + -0.7 602,451 + -1.0 602,451 + -1.4 602,451 + -1.0 602,451 + -0.1 602,451 + -2.3 602,452 - -0.7 602,452 - -0.4 602,452 - +0.2 602,452 - -0.7 602,487 + -0.9 602,488 - -1.1 602,490 + -1.1 602,490 + +0.8 602,490 + -0.3 602,490 + +0.0 602,490 + -0.6 602,490 + -0.1 602,490 + +0.0 602,490 + -0.4 602,490 + -1.5 602,490 + -1.3 602,491 - -2.1 602,491 - -1.1 602,491 - +1.2 602,491 - +0.0 602,491 - +0.2 602,519 + -1.8 602,519 + -0.8 602,519 + +0.0 602,520 - -0.5 602,520 - -0.4 602,520 - -1.3 602,520 - -1.4 602,520 - -0.4 602,546 - +0.8 602,546 - -1.2 602,546 - +0.6 602,568 + -0.3 602,568 + -0.2 602,568 + -0.5 602,568 + -0.5 602,590 + -0.8 602,591 - +0.3 602,591 - -1.4 602,597 + +0.3 602,597 + -0.2 602,598 - -0.7 602,598 - -0.4 602,598 - +0.4 602,633 - +1.8 602,657 + -0.6 602,658 - -1.8 602,674 - -0.5 602,703 - +0.3 602,703 - +0.0 602,703 - +1.4 602,723 + +0.2 602,724 - +0.7 602,724 - -0.1 602,774 + -0.4 602,774 + -0.8 602,774 + +1.2 602,774 + -0.3 602,774 + -0.4 602,775 - +0.3 602,775 - -1.1 602,810 + +0.2 602,843 + -0.4 602,843 + +0.2 602,844 - -1.1 602,860 + -0.8 602,860 + -0.4 602,861 - -0.4 602,861 - -0.5 602,861 - -1.3 602,862 + +0.2 602,862 + -1.9 602,862 + +0.2 602,863 - -1.1 602,863 - -0.6 602,867 + +1.1 602,867 + +1.2 602,867 + +0.2 602,867 + -0.6 602,867 + +0.6 602,867 + +0.2 602,867 + -0.0 602,868 - -0.5 602,868 - -2.4 602,868 - -1.1 602,868 - -2.1 602,868 - -1.6 602,868 - -1.0 602,868 - +1.2 602,872 + -0.2 602,872 + -0.8 602,873 - +0.9 602,880 + +0.8 602,881 - -1.4 602,890 + -0.2 602,890 + +1.1 602,890 + +0.1 602,890 + +0.1 602,891 - -1.1 602,899 - -0.2 602,899 - -0.8 602,931 + -1.1 602,931 + -0.4 602,934 + +1.6 602,972 + +0.2 602,972 + +1.2 602,972 + +1.2 602,972 + +0.0 602,976 + +0.4 602,976 + -0.4 602,977 - +0.6 602,977 - +0.2 603,036 + -0.6 603,223 + DDA3937_RS02725 0.43 -0.4 603,224 - DDA3937_RS02725 0.43 -1.4 603,289 + DDA3937_RS02725 0.55 +0.2 603,290 - DDA3937_RS02725 0.55 -1.1 603,583 + +0.3 603,637 + +0.2 603,637 + +0.5 603,637 + -1.6 603,637 + -1.6 603,637 + +0.9 603,637 + -0.1 603,637 + -0.7 603,678 + -1.4 603,683 + -0.4 604,020 + +0.6
Or see this region's nucleotide sequence