Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS02580 and DDA3937_RS02585 are separated by 13 nucleotides DDA3937_RS02585 and DDA3937_RS02590 overlap by 4 nucleotides
DDA3937_RS02580: DDA3937_RS02580 - polysaccharide biosynthesis tyrosine autokinase, at 571,011 to 573,143
_RS02580
DDA3937_RS02585: DDA3937_RS02585 - oligosaccharide flippase family protein, at 573,157 to 574,368
_RS02585
DDA3937_RS02590: DDA3937_RS02590 - hypothetical protein, at 574,365 to 575,747
_RS02590
Position (kb) 573
574
575 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 572.166 kb on + strand, within DDA3937_RS02580 at 572.166 kb on + strand, within DDA3937_RS02580 at 572.166 kb on + strand, within DDA3937_RS02580 at 572.166 kb on + strand, within DDA3937_RS02580 at 572.166 kb on + strand at 572.166 kb on + strand, within DDA3937_RS02580 at 572.166 kb on + strand, within DDA3937_RS02580 at 572.166 kb on + strand, within DDA3937_RS02580 at 572.166 kb on + strand, within DDA3937_RS02580 at 572.167 kb on - strand, within DDA3937_RS02580 at 572.167 kb on - strand, within DDA3937_RS02580 at 572.167 kb on - strand, within DDA3937_RS02580 at 572.167 kb on - strand, within DDA3937_RS02580 at 572.167 kb on - strand, within DDA3937_RS02580 at 572.167 kb on - strand, within DDA3937_RS02580 at 572.167 kb on - strand, within DDA3937_RS02580 at 572.167 kb on - strand, within DDA3937_RS02580 at 572.167 kb on - strand, within DDA3937_RS02580 at 572.168 kb on + strand, within DDA3937_RS02580 at 572.168 kb on + strand, within DDA3937_RS02580 at 572.169 kb on - strand, within DDA3937_RS02580 at 572.169 kb on - strand, within DDA3937_RS02580 at 572.178 kb on + strand, within DDA3937_RS02580 at 572.179 kb on - strand, within DDA3937_RS02580 at 572.179 kb on - strand, within DDA3937_RS02580 at 572.214 kb on + strand, within DDA3937_RS02580 at 572.214 kb on + strand, within DDA3937_RS02580 at 572.214 kb on + strand, within DDA3937_RS02580 at 572.214 kb on + strand, within DDA3937_RS02580 at 572.214 kb on + strand, within DDA3937_RS02580 at 572.215 kb on - strand, within DDA3937_RS02580 at 572.215 kb on - strand, within DDA3937_RS02580 at 572.215 kb on - strand, within DDA3937_RS02580 at 572.215 kb on - strand, within DDA3937_RS02580 at 572.215 kb on - strand, within DDA3937_RS02580 at 572.215 kb on - strand, within DDA3937_RS02580 at 572.215 kb on - strand, within DDA3937_RS02580 at 572.218 kb on + strand, within DDA3937_RS02580 at 572.233 kb on + strand, within DDA3937_RS02580 at 572.233 kb on + strand, within DDA3937_RS02580 at 572.233 kb on + strand, within DDA3937_RS02580 at 572.234 kb on - strand, within DDA3937_RS02580 at 572.238 kb on + strand, within DDA3937_RS02580 at 572.238 kb on + strand, within DDA3937_RS02580 at 572.238 kb on + strand, within DDA3937_RS02580 at 572.279 kb on + strand, within DDA3937_RS02580 at 572.280 kb on - strand, within DDA3937_RS02580 at 572.311 kb on + strand, within DDA3937_RS02580 at 572.311 kb on + strand, within DDA3937_RS02580 at 572.334 kb on + strand, within DDA3937_RS02580 at 572.335 kb on - strand, within DDA3937_RS02580 at 572.461 kb on + strand, within DDA3937_RS02580 at 572.759 kb on + strand, within DDA3937_RS02580 at 572.760 kb on - strand, within DDA3937_RS02580 at 572.773 kb on + strand at 572.773 kb on + strand, within DDA3937_RS02580 at 572.774 kb on - strand, within DDA3937_RS02580 at 572.774 kb on - strand, within DDA3937_RS02580 at 572.868 kb on + strand, within DDA3937_RS02580 at 572.879 kb on + strand, within DDA3937_RS02580 at 572.879 kb on + strand, within DDA3937_RS02580 at 572.879 kb on + strand, within DDA3937_RS02580 at 572.880 kb on - strand, within DDA3937_RS02580 at 572.938 kb on + strand at 573.011 kb on - strand at 573.088 kb on + strand at 573.088 kb on + strand at 573.089 kb on - strand at 573.165 kb on - strand at 573.165 kb on - strand at 573.228 kb on + strand at 573.250 kb on + strand at 573.251 kb on - strand at 573.251 kb on - strand at 573.251 kb on - strand at 573.274 kb on + strand at 573.275 kb on - strand at 573.286 kb on + strand, within DDA3937_RS02585 at 573.286 kb on + strand, within DDA3937_RS02585 at 573.287 kb on - strand, within DDA3937_RS02585 at 573.287 kb on - strand, within DDA3937_RS02585 at 573.287 kb on - strand, within DDA3937_RS02585 at 573.318 kb on + strand, within DDA3937_RS02585 at 573.319 kb on - strand, within DDA3937_RS02585 at 573.466 kb on + strand, within DDA3937_RS02585 at 573.467 kb on - strand, within DDA3937_RS02585 at 573.467 kb on - strand, within DDA3937_RS02585 at 573.484 kb on + strand, within DDA3937_RS02585 at 573.484 kb on + strand, within DDA3937_RS02585 at 573.528 kb on + strand, within DDA3937_RS02585 at 573.528 kb on + strand, within DDA3937_RS02585 at 573.529 kb on - strand, within DDA3937_RS02585 at 573.660 kb on + strand, within DDA3937_RS02585 at 573.660 kb on + strand, within DDA3937_RS02585 at 573.661 kb on - strand, within DDA3937_RS02585 at 573.789 kb on + strand, within DDA3937_RS02585 at 573.789 kb on + strand, within DDA3937_RS02585 at 573.789 kb on + strand, within DDA3937_RS02585 at 573.792 kb on + strand, within DDA3937_RS02585 at 573.793 kb on - strand, within DDA3937_RS02585 at 573.795 kb on + strand, within DDA3937_RS02585 at 573.808 kb on - strand, within DDA3937_RS02585 at 573.816 kb on + strand, within DDA3937_RS02585 at 573.909 kb on + strand, within DDA3937_RS02585 at 573.989 kb on + strand, within DDA3937_RS02585 at 574.026 kb on - strand, within DDA3937_RS02585 at 574.100 kb on - strand, within DDA3937_RS02585 at 574.116 kb on - strand, within DDA3937_RS02585 at 574.217 kb on + strand, within DDA3937_RS02585 at 574.326 kb on + strand at 574.350 kb on + strand at 574.386 kb on + strand at 574.386 kb on + strand at 574.398 kb on + strand at 574.398 kb on + strand at 574.417 kb on + strand at 574.476 kb on - strand at 574.526 kb on + strand, within DDA3937_RS02590 at 574.527 kb on - strand, within DDA3937_RS02590 at 574.527 kb on - strand, within DDA3937_RS02590 at 574.597 kb on + strand, within DDA3937_RS02590 at 574.601 kb on + strand, within DDA3937_RS02590 at 574.602 kb on - strand, within DDA3937_RS02590 at 574.602 kb on - strand, within DDA3937_RS02590 at 574.610 kb on - strand, within DDA3937_RS02590 at 574.621 kb on + strand, within DDA3937_RS02590 at 574.629 kb on - strand, within DDA3937_RS02590 at 574.631 kb on + strand, within DDA3937_RS02590 at 574.734 kb on + strand, within DDA3937_RS02590 at 574.735 kb on - strand, within DDA3937_RS02590 at 574.746 kb on + strand, within DDA3937_RS02590 at 574.770 kb on + strand, within DDA3937_RS02590 at 574.770 kb on + strand, within DDA3937_RS02590 at 574.771 kb on - strand, within DDA3937_RS02590 at 574.878 kb on - strand, within DDA3937_RS02590 at 574.910 kb on + strand, within DDA3937_RS02590 at 574.911 kb on - strand, within DDA3937_RS02590 at 574.935 kb on - strand, within DDA3937_RS02590 at 575.070 kb on + strand, within DDA3937_RS02590 at 575.073 kb on - strand, within DDA3937_RS02590 at 575.074 kb on + strand, within DDA3937_RS02590 at 575.075 kb on - strand, within DDA3937_RS02590 at 575.092 kb on + strand, within DDA3937_RS02590 at 575.256 kb on + strand, within DDA3937_RS02590 at 575.259 kb on - strand at 575.288 kb on + strand, within DDA3937_RS02590 at 575.296 kb on + strand, within DDA3937_RS02590 at 575.360 kb on - strand, within DDA3937_RS02590
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 572,166 + DDA3937_RS02580 0.54 -0.3 572,166 + DDA3937_RS02580 0.54 -0.9 572,166 + DDA3937_RS02580 0.54 +0.2 572,166 + DDA3937_RS02580 0.54 +0.5 572,166 + +0.6 572,166 + DDA3937_RS02580 0.54 +0.8 572,166 + DDA3937_RS02580 0.54 -0.1 572,166 + DDA3937_RS02580 0.54 -0.3 572,166 + DDA3937_RS02580 0.54 -0.1 572,167 - DDA3937_RS02580 0.54 +0.2 572,167 - DDA3937_RS02580 0.54 -1.4 572,167 - DDA3937_RS02580 0.54 +1.2 572,167 - DDA3937_RS02580 0.54 -1.4 572,167 - DDA3937_RS02580 0.54 -0.6 572,167 - DDA3937_RS02580 0.54 +0.1 572,167 - DDA3937_RS02580 0.54 +0.1 572,167 - DDA3937_RS02580 0.54 -0.2 572,167 - DDA3937_RS02580 0.54 +1.5 572,168 + DDA3937_RS02580 0.54 -1.4 572,168 + DDA3937_RS02580 0.54 +0.2 572,169 - DDA3937_RS02580 0.54 +0.1 572,169 - DDA3937_RS02580 0.54 -0.9 572,178 + DDA3937_RS02580 0.55 +1.0 572,179 - DDA3937_RS02580 0.55 -0.8 572,179 - DDA3937_RS02580 0.55 -0.1 572,214 + DDA3937_RS02580 0.56 +0.3 572,214 + DDA3937_RS02580 0.56 -0.9 572,214 + DDA3937_RS02580 0.56 +0.9 572,214 + DDA3937_RS02580 0.56 -1.0 572,214 + DDA3937_RS02580 0.56 -0.6 572,215 - DDA3937_RS02580 0.56 -0.3 572,215 - DDA3937_RS02580 0.56 +0.5 572,215 - DDA3937_RS02580 0.56 -1.1 572,215 - DDA3937_RS02580 0.56 -0.8 572,215 - DDA3937_RS02580 0.56 -0.5 572,215 - DDA3937_RS02580 0.56 -1.5 572,215 - DDA3937_RS02580 0.56 -1.2 572,218 + DDA3937_RS02580 0.57 +0.8 572,233 + DDA3937_RS02580 0.57 +0.7 572,233 + DDA3937_RS02580 0.57 -0.7 572,233 + DDA3937_RS02580 0.57 -0.2 572,234 - DDA3937_RS02580 0.57 +0.5 572,238 + DDA3937_RS02580 0.58 -0.7 572,238 + DDA3937_RS02580 0.58 +0.1 572,238 + DDA3937_RS02580 0.58 +0.5 572,279 + DDA3937_RS02580 0.59 -0.2 572,280 - DDA3937_RS02580 0.59 +0.8 572,311 + DDA3937_RS02580 0.61 +0.0 572,311 + DDA3937_RS02580 0.61 -0.8 572,334 + DDA3937_RS02580 0.62 -0.1 572,335 - DDA3937_RS02580 0.62 -0.6 572,461 + DDA3937_RS02580 0.68 +0.1 572,759 + DDA3937_RS02580 0.82 -2.8 572,760 - DDA3937_RS02580 0.82 -0.1 572,773 + +3.2 572,773 + DDA3937_RS02580 0.83 +0.3 572,774 - DDA3937_RS02580 0.83 +0.1 572,774 - DDA3937_RS02580 0.83 -0.8 572,868 + DDA3937_RS02580 0.87 -0.5 572,879 + DDA3937_RS02580 0.88 -0.0 572,879 + DDA3937_RS02580 0.88 +1.3 572,879 + DDA3937_RS02580 0.88 +0.3 572,880 - DDA3937_RS02580 0.88 -0.3 572,938 + -1.2 573,011 - -0.4 573,088 + +0.6 573,088 + -0.2 573,089 - -0.3 573,165 - +0.3 573,165 - +0.2 573,228 + -0.7 573,250 + -0.7 573,251 - +1.2 573,251 - -0.2 573,251 - -0.5 573,274 + -1.1 573,275 - +1.2 573,286 + DDA3937_RS02585 0.11 -1.0 573,286 + DDA3937_RS02585 0.11 -1.7 573,287 - DDA3937_RS02585 0.11 -1.3 573,287 - DDA3937_RS02585 0.11 -1.8 573,287 - DDA3937_RS02585 0.11 -0.3 573,318 + DDA3937_RS02585 0.13 +0.2 573,319 - DDA3937_RS02585 0.13 -1.5 573,466 + DDA3937_RS02585 0.25 -0.6 573,467 - DDA3937_RS02585 0.26 -2.3 573,467 - DDA3937_RS02585 0.26 +0.3 573,484 + DDA3937_RS02585 0.27 -0.8 573,484 + DDA3937_RS02585 0.27 -1.1 573,528 + DDA3937_RS02585 0.31 -0.1 573,528 + DDA3937_RS02585 0.31 -1.9 573,529 - DDA3937_RS02585 0.31 +2.8 573,660 + DDA3937_RS02585 0.42 -2.4 573,660 + DDA3937_RS02585 0.42 -1.0 573,661 - DDA3937_RS02585 0.42 -1.3 573,789 + DDA3937_RS02585 0.52 -0.8 573,789 + DDA3937_RS02585 0.52 -2.9 573,789 + DDA3937_RS02585 0.52 -0.2 573,792 + DDA3937_RS02585 0.52 +1.0 573,793 - DDA3937_RS02585 0.52 +0.2 573,795 + DDA3937_RS02585 0.53 -1.3 573,808 - DDA3937_RS02585 0.54 -1.1 573,816 + DDA3937_RS02585 0.54 -0.1 573,909 + DDA3937_RS02585 0.62 -1.0 573,989 + DDA3937_RS02585 0.69 +0.2 574,026 - DDA3937_RS02585 0.72 +0.0 574,100 - DDA3937_RS02585 0.78 -0.5 574,116 - DDA3937_RS02585 0.79 -0.6 574,217 + DDA3937_RS02585 0.87 -2.4 574,326 + +0.4 574,350 + -1.5 574,386 + -0.9 574,386 + +0.2 574,398 + -0.0 574,398 + -0.2 574,417 + +0.2 574,476 - -0.6 574,526 + DDA3937_RS02590 0.12 +0.3 574,527 - DDA3937_RS02590 0.12 +0.3 574,527 - DDA3937_RS02590 0.12 -0.4 574,597 + DDA3937_RS02590 0.17 -0.0 574,601 + DDA3937_RS02590 0.17 -0.2 574,602 - DDA3937_RS02590 0.17 +0.2 574,602 - DDA3937_RS02590 0.17 -0.2 574,610 - DDA3937_RS02590 0.18 +0.5 574,621 + DDA3937_RS02590 0.19 -0.6 574,629 - DDA3937_RS02590 0.19 -0.1 574,631 + DDA3937_RS02590 0.19 -0.4 574,734 + DDA3937_RS02590 0.27 -1.3 574,735 - DDA3937_RS02590 0.27 -1.5 574,746 + DDA3937_RS02590 0.28 -0.2 574,770 + DDA3937_RS02590 0.29 +0.1 574,770 + DDA3937_RS02590 0.29 -0.1 574,771 - DDA3937_RS02590 0.29 +0.1 574,878 - DDA3937_RS02590 0.37 -0.6 574,910 + DDA3937_RS02590 0.39 -0.3 574,911 - DDA3937_RS02590 0.39 +1.0 574,935 - DDA3937_RS02590 0.41 -0.0 575,070 + DDA3937_RS02590 0.51 -1.0 575,073 - DDA3937_RS02590 0.51 -2.0 575,074 + DDA3937_RS02590 0.51 -0.0 575,075 - DDA3937_RS02590 0.51 -0.4 575,092 + DDA3937_RS02590 0.53 -1.1 575,256 + DDA3937_RS02590 0.64 -1.3 575,259 - +0.2 575,288 + DDA3937_RS02590 0.67 -0.3 575,296 + DDA3937_RS02590 0.67 +0.2 575,360 - DDA3937_RS02590 0.72 -0.6
Or see this region's nucleotide sequence