Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS02510 and DDA3937_RS02515 are separated by 104 nucleotides DDA3937_RS02515 and DDA3937_RS02520 are separated by 79 nucleotides
DDA3937_RS02510: DDA3937_RS02510 - iron ABC transporter permease, at 555,440 to 556,438
_RS02510
DDA3937_RS02515: DDA3937_RS02515 - alkyl hydroperoxide reductase subunit C, at 556,543 to 557,106
_RS02515
DDA3937_RS02520: DDA3937_RS02520 - alkyl hydroperoxide reductase subunit F, at 557,186 to 558,748
_RS02520
Position (kb) 556
557
558 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 555.913 kb on + strand, within DDA3937_RS02510 at 555.914 kb on - strand, within DDA3937_RS02510 at 555.944 kb on + strand, within DDA3937_RS02510 at 556.044 kb on + strand, within DDA3937_RS02510 at 556.436 kb on + strand at 556.437 kb on - strand at 556.441 kb on - strand at 556.441 kb on - strand at 556.480 kb on + strand at 556.480 kb on + strand at 556.480 kb on + strand at 556.480 kb on + strand at 556.480 kb on + strand at 556.481 kb on - strand at 556.500 kb on + strand at 556.500 kb on + strand at 556.500 kb on + strand at 556.500 kb on + strand at 556.500 kb on + strand at 556.500 kb on + strand at 556.500 kb on + strand at 556.500 kb on + strand at 556.500 kb on + strand at 556.500 kb on + strand at 556.500 kb on + strand at 556.500 kb on + strand at 556.501 kb on - strand at 556.501 kb on - strand at 556.501 kb on - strand at 556.501 kb on - strand at 556.501 kb on - strand at 556.501 kb on - strand at 556.501 kb on - strand at 556.501 kb on - strand at 556.501 kb on - strand at 556.501 kb on - strand at 556.501 kb on - strand at 556.501 kb on - strand at 556.501 kb on - strand at 556.501 kb on - strand at 556.501 kb on - strand at 556.501 kb on - strand at 556.501 kb on - strand at 556.501 kb on - strand at 556.501 kb on - strand at 556.501 kb on - strand at 556.501 kb on - strand at 556.557 kb on + strand at 556.561 kb on - strand at 556.671 kb on + strand, within DDA3937_RS02515 at 556.712 kb on - strand, within DDA3937_RS02515 at 556.715 kb on - strand, within DDA3937_RS02515 at 556.739 kb on + strand, within DDA3937_RS02515 at 556.747 kb on + strand, within DDA3937_RS02515 at 556.747 kb on + strand, within DDA3937_RS02515 at 556.747 kb on + strand, within DDA3937_RS02515 at 556.747 kb on + strand, within DDA3937_RS02515 at 556.747 kb on + strand, within DDA3937_RS02515 at 556.747 kb on + strand, within DDA3937_RS02515 at 556.747 kb on + strand, within DDA3937_RS02515 at 556.748 kb on - strand, within DDA3937_RS02515 at 556.748 kb on - strand, within DDA3937_RS02515 at 556.748 kb on - strand, within DDA3937_RS02515 at 556.748 kb on - strand, within DDA3937_RS02515 at 556.748 kb on - strand, within DDA3937_RS02515 at 556.748 kb on - strand, within DDA3937_RS02515 at 556.748 kb on - strand, within DDA3937_RS02515 at 556.748 kb on - strand, within DDA3937_RS02515 at 556.774 kb on - strand, within DDA3937_RS02515 at 556.774 kb on - strand, within DDA3937_RS02515 at 556.929 kb on + strand, within DDA3937_RS02515 at 556.929 kb on + strand, within DDA3937_RS02515 at 556.930 kb on - strand, within DDA3937_RS02515 at 557.011 kb on + strand, within DDA3937_RS02515 at 557.011 kb on + strand, within DDA3937_RS02515 at 557.011 kb on + strand, within DDA3937_RS02515 at 557.012 kb on - strand, within DDA3937_RS02515 at 557.012 kb on - strand, within DDA3937_RS02515 at 557.012 kb on - strand, within DDA3937_RS02515 at 557.046 kb on + strand, within DDA3937_RS02515 at 557.046 kb on + strand, within DDA3937_RS02515 at 557.067 kb on + strand at 557.067 kb on + strand at 557.067 kb on + strand at 557.068 kb on - strand at 557.068 kb on - strand at 557.105 kb on - strand at 557.132 kb on - strand at 557.185 kb on + strand at 557.185 kb on + strand at 557.185 kb on + strand at 557.185 kb on + strand at 557.185 kb on + strand at 557.185 kb on + strand at 557.186 kb on - strand at 557.186 kb on - strand at 557.186 kb on - strand at 557.186 kb on - strand at 557.186 kb on - strand at 557.186 kb on - strand at 557.186 kb on - strand at 557.186 kb on - strand at 557.186 kb on - strand at 557.186 kb on - strand at 557.186 kb on - strand at 557.186 kb on - strand at 557.186 kb on - strand at 557.186 kb on - strand at 557.186 kb on - strand at 557.197 kb on + strand at 557.198 kb on - strand at 557.198 kb on - strand at 557.198 kb on - strand at 557.198 kb on - strand at 557.200 kb on + strand at 557.200 kb on + strand at 557.200 kb on + strand at 557.200 kb on + strand at 557.200 kb on + strand at 557.200 kb on + strand at 557.200 kb on + strand at 557.200 kb on + strand at 557.201 kb on - strand at 557.201 kb on - strand at 557.201 kb on - strand at 557.201 kb on - strand at 557.201 kb on - strand at 557.201 kb on - strand at 557.201 kb on - strand at 557.201 kb on - strand at 557.201 kb on - strand at 557.201 kb on - strand at 557.223 kb on - strand at 557.236 kb on - strand at 557.253 kb on + strand at 557.253 kb on + strand at 557.350 kb on + strand, within DDA3937_RS02520 at 557.351 kb on - strand, within DDA3937_RS02520 at 557.369 kb on - strand, within DDA3937_RS02520 at 557.369 kb on - strand, within DDA3937_RS02520 at 557.447 kb on - strand, within DDA3937_RS02520 at 557.536 kb on + strand, within DDA3937_RS02520 at 557.537 kb on - strand, within DDA3937_RS02520 at 557.555 kb on + strand, within DDA3937_RS02520 at 557.555 kb on + strand, within DDA3937_RS02520 at 557.556 kb on - strand, within DDA3937_RS02520 at 557.556 kb on - strand, within DDA3937_RS02520 at 557.558 kb on + strand, within DDA3937_RS02520 at 557.558 kb on + strand, within DDA3937_RS02520 at 557.608 kb on - strand, within DDA3937_RS02520 at 557.683 kb on + strand, within DDA3937_RS02520 at 557.684 kb on - strand, within DDA3937_RS02520 at 557.686 kb on + strand, within DDA3937_RS02520 at 557.687 kb on - strand, within DDA3937_RS02520 at 557.687 kb on - strand, within DDA3937_RS02520 at 557.707 kb on - strand, within DDA3937_RS02520 at 557.707 kb on - strand, within DDA3937_RS02520 at 557.822 kb on + strand, within DDA3937_RS02520 at 557.823 kb on - strand, within DDA3937_RS02520 at 557.872 kb on - strand, within DDA3937_RS02520 at 557.873 kb on + strand, within DDA3937_RS02520 at 557.957 kb on + strand, within DDA3937_RS02520 at 557.958 kb on - strand, within DDA3937_RS02520 at 557.958 kb on - strand, within DDA3937_RS02520
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 555,913 + DDA3937_RS02510 0.47 +0.8 555,914 - DDA3937_RS02510 0.47 +0.0 555,944 + DDA3937_RS02510 0.50 +0.6 556,044 + DDA3937_RS02510 0.60 -0.7 556,436 + +0.2 556,437 - -2.2 556,441 - +0.0 556,441 - -0.3 556,480 + +0.5 556,480 + +0.2 556,480 + +1.4 556,480 + +0.6 556,480 + -2.0 556,481 - -1.6 556,500 + -0.5 556,500 + -0.0 556,500 + -0.4 556,500 + +0.2 556,500 + -0.2 556,500 + +0.7 556,500 + -0.0 556,500 + -0.0 556,500 + +0.1 556,500 + -0.5 556,500 + +1.2 556,500 + -0.8 556,501 - +0.5 556,501 - +2.2 556,501 - -0.4 556,501 - -1.2 556,501 - -0.3 556,501 - -0.6 556,501 - -1.1 556,501 - -0.6 556,501 - -0.6 556,501 - +1.0 556,501 - -0.6 556,501 - +1.2 556,501 - +0.5 556,501 - +0.3 556,501 - -0.4 556,501 - -1.3 556,501 - -0.3 556,501 - -2.1 556,501 - +2.5 556,501 - -0.4 556,501 - -0.8 556,557 + +1.2 556,561 - -0.6 556,671 + DDA3937_RS02515 0.23 +0.3 556,712 - DDA3937_RS02515 0.30 -1.0 556,715 - DDA3937_RS02515 0.30 -0.0 556,739 + DDA3937_RS02515 0.35 -0.3 556,747 + DDA3937_RS02515 0.36 -1.0 556,747 + DDA3937_RS02515 0.36 -0.2 556,747 + DDA3937_RS02515 0.36 -0.8 556,747 + DDA3937_RS02515 0.36 +0.1 556,747 + DDA3937_RS02515 0.36 +0.3 556,747 + DDA3937_RS02515 0.36 +1.4 556,747 + DDA3937_RS02515 0.36 -0.1 556,748 - DDA3937_RS02515 0.36 -1.0 556,748 - DDA3937_RS02515 0.36 -0.5 556,748 - DDA3937_RS02515 0.36 -1.8 556,748 - DDA3937_RS02515 0.36 +0.2 556,748 - DDA3937_RS02515 0.36 +1.2 556,748 - DDA3937_RS02515 0.36 -2.0 556,748 - DDA3937_RS02515 0.36 -1.3 556,748 - DDA3937_RS02515 0.36 +0.2 556,774 - DDA3937_RS02515 0.41 -2.4 556,774 - DDA3937_RS02515 0.41 +2.8 556,929 + DDA3937_RS02515 0.68 -1.1 556,929 + DDA3937_RS02515 0.68 -1.6 556,930 - DDA3937_RS02515 0.69 +0.7 557,011 + DDA3937_RS02515 0.83 -2.1 557,011 + DDA3937_RS02515 0.83 +0.6 557,011 + DDA3937_RS02515 0.83 -0.2 557,012 - DDA3937_RS02515 0.83 -1.8 557,012 - DDA3937_RS02515 0.83 -0.2 557,012 - DDA3937_RS02515 0.83 -1.0 557,046 + DDA3937_RS02515 0.89 -0.3 557,046 + DDA3937_RS02515 0.89 -0.1 557,067 + -1.0 557,067 + +0.2 557,067 + -0.9 557,068 - -1.1 557,068 - +0.6 557,105 - +0.1 557,132 - +0.8 557,185 + -1.3 557,185 + -0.5 557,185 + -0.3 557,185 + -0.7 557,185 + +0.6 557,185 + -1.6 557,186 - +0.2 557,186 - -0.1 557,186 - +0.6 557,186 - +0.0 557,186 - +0.5 557,186 - -1.1 557,186 - -0.2 557,186 - -0.2 557,186 - +0.1 557,186 - -1.1 557,186 - -0.4 557,186 - +0.9 557,186 - +0.1 557,186 - -0.1 557,186 - -0.5 557,197 + +1.6 557,198 - -0.4 557,198 - -0.8 557,198 - -0.4 557,198 - -0.5 557,200 + -1.3 557,200 + -0.0 557,200 + -1.8 557,200 + -0.3 557,200 + +0.5 557,200 + +0.6 557,200 + -2.1 557,200 + -0.1 557,201 - -1.0 557,201 - +0.5 557,201 - -1.0 557,201 - -0.3 557,201 - -0.9 557,201 - -0.7 557,201 - -0.5 557,201 - +0.7 557,201 - -0.8 557,201 - +0.1 557,223 - -2.3 557,236 - +0.9 557,253 + +0.2 557,253 + +0.1 557,350 + DDA3937_RS02520 0.10 +0.4 557,351 - DDA3937_RS02520 0.11 +0.1 557,369 - DDA3937_RS02520 0.12 +0.5 557,369 - DDA3937_RS02520 0.12 +1.0 557,447 - DDA3937_RS02520 0.17 +0.5 557,536 + DDA3937_RS02520 0.22 -0.2 557,537 - DDA3937_RS02520 0.22 +1.2 557,555 + DDA3937_RS02520 0.24 +1.0 557,555 + DDA3937_RS02520 0.24 -0.9 557,556 - DDA3937_RS02520 0.24 -0.3 557,556 - DDA3937_RS02520 0.24 -0.8 557,558 + DDA3937_RS02520 0.24 -0.4 557,558 + DDA3937_RS02520 0.24 -1.0 557,608 - DDA3937_RS02520 0.27 +0.1 557,683 + DDA3937_RS02520 0.32 +1.0 557,684 - DDA3937_RS02520 0.32 -0.4 557,686 + DDA3937_RS02520 0.32 +0.0 557,687 - DDA3937_RS02520 0.32 -0.5 557,687 - DDA3937_RS02520 0.32 -0.4 557,707 - DDA3937_RS02520 0.33 -2.6 557,707 - DDA3937_RS02520 0.33 -0.2 557,822 + DDA3937_RS02520 0.41 +1.2 557,823 - DDA3937_RS02520 0.41 -0.0 557,872 - DDA3937_RS02520 0.44 -0.2 557,873 + DDA3937_RS02520 0.44 -0.3 557,957 + DDA3937_RS02520 0.49 +0.2 557,958 - DDA3937_RS02520 0.49 -0.0 557,958 - DDA3937_RS02520 0.49 -0.4
Or see this region's nucleotide sequence