Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS02485 and DDA3937_RS02490 are separated by 468 nucleotides DDA3937_RS02490 and DDA3937_RS02495 are separated by 27 nucleotides DDA3937_RS02495 and DDA3937_RS02500 are separated by 250 nucleotides
DDA3937_RS02485: DDA3937_RS02485 - bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase, at 550,857 to 551,480
_RS02485
DDA3937_RS02490: DDA3937_RS02490 - amidohydrolase, at 551,949 to 553,118
_RS02490
DDA3937_RS02495: DDA3937_RS02495 - hypothetical protein, at 553,146 to 553,388
_RS02495
DDA3937_RS02500: DDA3937_RS02500 - ABC transporter ATP-binding protein, at 553,639 to 554,454
_RS02500
Position (kb) 551
552
553
554 Strain fitness (log2 ratio) -2
-1
0
1
2 at 551.095 kb on - strand, within DDA3937_RS02485 at 551.095 kb on - strand, within DDA3937_RS02485 at 551.095 kb on - strand, within DDA3937_RS02485 at 551.095 kb on - strand, within DDA3937_RS02485 at 551.095 kb on - strand, within DDA3937_RS02485 at 551.242 kb on + strand, within DDA3937_RS02485 at 551.242 kb on + strand, within DDA3937_RS02485 at 551.243 kb on - strand, within DDA3937_RS02485 at 551.243 kb on - strand, within DDA3937_RS02485 at 551.243 kb on - strand, within DDA3937_RS02485 at 551.274 kb on + strand, within DDA3937_RS02485 at 551.274 kb on + strand, within DDA3937_RS02485 at 551.274 kb on + strand, within DDA3937_RS02485 at 551.274 kb on + strand, within DDA3937_RS02485 at 551.274 kb on + strand, within DDA3937_RS02485 at 551.274 kb on + strand, within DDA3937_RS02485 at 551.274 kb on + strand, within DDA3937_RS02485 at 551.274 kb on + strand, within DDA3937_RS02485 at 551.275 kb on - strand, within DDA3937_RS02485 at 551.275 kb on - strand, within DDA3937_RS02485 at 551.275 kb on - strand, within DDA3937_RS02485 at 551.275 kb on - strand, within DDA3937_RS02485 at 551.323 kb on + strand, within DDA3937_RS02485 at 551.323 kb on + strand, within DDA3937_RS02485 at 551.323 kb on + strand, within DDA3937_RS02485 at 551.323 kb on + strand, within DDA3937_RS02485 at 551.324 kb on - strand, within DDA3937_RS02485 at 551.332 kb on - strand, within DDA3937_RS02485 at 551.332 kb on - strand, within DDA3937_RS02485 at 551.332 kb on - strand, within DDA3937_RS02485 at 551.332 kb on - strand, within DDA3937_RS02485 at 551.332 kb on - strand, within DDA3937_RS02485 at 551.332 kb on - strand, within DDA3937_RS02485 at 551.343 kb on - strand, within DDA3937_RS02485 at 551.361 kb on - strand, within DDA3937_RS02485 at 551.363 kb on + strand, within DDA3937_RS02485 at 551.363 kb on + strand, within DDA3937_RS02485 at 551.364 kb on - strand, within DDA3937_RS02485 at 551.364 kb on - strand, within DDA3937_RS02485 at 551.364 kb on - strand at 551.364 kb on - strand, within DDA3937_RS02485 at 551.372 kb on + strand at 551.373 kb on - strand, within DDA3937_RS02485 at 551.413 kb on + strand, within DDA3937_RS02485 at 551.413 kb on + strand, within DDA3937_RS02485 at 551.424 kb on + strand at 551.424 kb on + strand at 551.424 kb on + strand at 551.449 kb on + strand at 551.450 kb on - strand at 551.450 kb on - strand at 551.503 kb on - strand at 551.507 kb on - strand at 551.525 kb on + strand at 551.534 kb on + strand at 551.534 kb on + strand at 551.535 kb on - strand at 551.535 kb on - strand at 551.604 kb on + strand at 551.604 kb on + strand at 551.604 kb on + strand at 551.604 kb on + strand at 551.605 kb on - strand at 551.639 kb on + strand at 551.639 kb on + strand at 551.639 kb on + strand at 551.640 kb on - strand at 551.640 kb on - strand at 551.712 kb on - strand at 551.712 kb on - strand at 551.712 kb on - strand at 551.727 kb on + strand at 551.729 kb on + strand at 551.730 kb on - strand at 551.733 kb on - strand at 551.742 kb on - strand at 551.744 kb on - strand at 551.744 kb on - strand at 551.744 kb on - strand at 551.787 kb on + strand at 551.787 kb on + strand at 551.787 kb on + strand at 551.788 kb on - strand at 551.788 kb on - strand at 551.788 kb on - strand at 551.788 kb on - strand at 551.816 kb on + strand at 551.817 kb on - strand at 551.839 kb on + strand at 551.847 kb on + strand at 551.847 kb on + strand at 551.847 kb on + strand at 551.847 kb on + strand at 551.847 kb on + strand at 551.847 kb on + strand at 551.847 kb on + strand at 551.848 kb on - strand at 551.972 kb on + strand at 551.973 kb on - strand at 552.041 kb on + strand at 552.041 kb on + strand at 552.041 kb on + strand at 552.042 kb on - strand at 552.042 kb on - strand at 552.042 kb on - strand at 552.231 kb on - strand, within DDA3937_RS02490 at 552.231 kb on - strand, within DDA3937_RS02490 at 552.231 kb on - strand, within DDA3937_RS02490 at 552.286 kb on - strand, within DDA3937_RS02490 at 552.414 kb on + strand, within DDA3937_RS02490 at 552.414 kb on + strand, within DDA3937_RS02490 at 552.414 kb on + strand, within DDA3937_RS02490 at 552.414 kb on + strand, within DDA3937_RS02490 at 552.414 kb on + strand, within DDA3937_RS02490 at 552.415 kb on - strand, within DDA3937_RS02490 at 552.415 kb on - strand, within DDA3937_RS02490 at 552.415 kb on - strand, within DDA3937_RS02490 at 552.415 kb on - strand, within DDA3937_RS02490 at 552.415 kb on - strand, within DDA3937_RS02490 at 552.763 kb on - strand, within DDA3937_RS02490 at 552.763 kb on - strand, within DDA3937_RS02490 at 552.946 kb on - strand, within DDA3937_RS02490 at 552.953 kb on - strand, within DDA3937_RS02490 at 552.953 kb on - strand, within DDA3937_RS02490 at 552.972 kb on + strand, within DDA3937_RS02490 at 552.973 kb on - strand, within DDA3937_RS02490 at 553.037 kb on + strand at 553.049 kb on + strand at 553.128 kb on + strand at 553.128 kb on + strand at 553.129 kb on - strand at 553.129 kb on - strand at 553.129 kb on - strand at 553.129 kb on - strand at 553.129 kb on - strand at 553.148 kb on - strand at 553.157 kb on + strand at 553.158 kb on - strand at 553.217 kb on + strand, within DDA3937_RS02495 at 553.415 kb on - strand at 553.415 kb on - strand at 553.467 kb on + strand at 553.468 kb on - strand at 553.468 kb on - strand at 553.473 kb on - strand at 553.516 kb on - strand at 553.516 kb on - strand at 553.525 kb on - strand at 553.525 kb on - strand at 553.525 kb on - strand at 553.525 kb on - strand at 553.670 kb on + strand at 553.671 kb on - strand at 553.693 kb on + strand at 553.694 kb on - strand at 553.694 kb on - strand at 553.719 kb on + strand at 553.945 kb on + strand, within DDA3937_RS02500 at 553.945 kb on + strand, within DDA3937_RS02500 at 553.945 kb on + strand, within DDA3937_RS02500 at 553.945 kb on + strand, within DDA3937_RS02500 at 553.946 kb on - strand, within DDA3937_RS02500 at 553.946 kb on - strand, within DDA3937_RS02500 at 553.946 kb on - strand, within DDA3937_RS02500 at 553.946 kb on - strand, within DDA3937_RS02500 at 553.946 kb on - strand, within DDA3937_RS02500 at 553.946 kb on - strand, within DDA3937_RS02500 at 553.946 kb on - strand, within DDA3937_RS02500 at 554.046 kb on - strand, within DDA3937_RS02500
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 551,095 - DDA3937_RS02485 0.38 +0.1 551,095 - DDA3937_RS02485 0.38 -0.9 551,095 - DDA3937_RS02485 0.38 +0.4 551,095 - DDA3937_RS02485 0.38 -0.5 551,095 - DDA3937_RS02485 0.38 +0.3 551,242 + DDA3937_RS02485 0.62 +0.0 551,242 + DDA3937_RS02485 0.62 +0.7 551,243 - DDA3937_RS02485 0.62 -1.1 551,243 - DDA3937_RS02485 0.62 +0.3 551,243 - DDA3937_RS02485 0.62 +1.0 551,274 + DDA3937_RS02485 0.67 -0.4 551,274 + DDA3937_RS02485 0.67 +1.2 551,274 + DDA3937_RS02485 0.67 +0.2 551,274 + DDA3937_RS02485 0.67 -1.9 551,274 + DDA3937_RS02485 0.67 +0.1 551,274 + DDA3937_RS02485 0.67 -1.2 551,274 + DDA3937_RS02485 0.67 -0.4 551,274 + DDA3937_RS02485 0.67 -0.6 551,275 - DDA3937_RS02485 0.67 +0.2 551,275 - DDA3937_RS02485 0.67 +0.3 551,275 - DDA3937_RS02485 0.67 -0.8 551,275 - DDA3937_RS02485 0.67 -1.4 551,323 + DDA3937_RS02485 0.75 +0.0 551,323 + DDA3937_RS02485 0.75 -0.7 551,323 + DDA3937_RS02485 0.75 -0.1 551,323 + DDA3937_RS02485 0.75 -0.2 551,324 - DDA3937_RS02485 0.75 +0.2 551,332 - DDA3937_RS02485 0.76 +0.8 551,332 - DDA3937_RS02485 0.76 -0.4 551,332 - DDA3937_RS02485 0.76 +0.6 551,332 - DDA3937_RS02485 0.76 -0.9 551,332 - DDA3937_RS02485 0.76 -0.6 551,332 - DDA3937_RS02485 0.76 -1.6 551,343 - DDA3937_RS02485 0.78 -0.1 551,361 - DDA3937_RS02485 0.81 -0.7 551,363 + DDA3937_RS02485 0.81 -2.1 551,363 + DDA3937_RS02485 0.81 -0.5 551,364 - DDA3937_RS02485 0.81 +0.5 551,364 - DDA3937_RS02485 0.81 -0.4 551,364 - -0.4 551,364 - DDA3937_RS02485 0.81 +0.5 551,372 + -1.1 551,373 - DDA3937_RS02485 0.83 -0.4 551,413 + DDA3937_RS02485 0.89 -0.9 551,413 + DDA3937_RS02485 0.89 -1.0 551,424 + +0.1 551,424 + -0.8 551,424 + +0.2 551,449 + -1.0 551,450 - -0.5 551,450 - +0.1 551,503 - -0.2 551,507 - -0.6 551,525 + -0.7 551,534 + +0.3 551,534 + -1.7 551,535 - -1.0 551,535 - +1.2 551,604 + -0.1 551,604 + +0.5 551,604 + -0.1 551,604 + -0.3 551,605 - -1.5 551,639 + +1.5 551,639 + -0.7 551,639 + -0.4 551,640 - -1.3 551,640 - +0.2 551,712 - -0.5 551,712 - -1.6 551,712 - -0.2 551,727 + -0.6 551,729 + -0.9 551,730 - -0.5 551,733 - +0.4 551,742 - +0.7 551,744 - -1.4 551,744 - -1.8 551,744 - -1.1 551,787 + -0.1 551,787 + +0.2 551,787 + -0.9 551,788 - -0.6 551,788 - -0.7 551,788 - +0.1 551,788 - +0.1 551,816 + -0.9 551,817 - -0.9 551,839 + +0.8 551,847 + -1.1 551,847 + -0.3 551,847 + +0.6 551,847 + -0.9 551,847 + -0.4 551,847 + -1.1 551,847 + +0.5 551,848 - +0.0 551,972 + +0.5 551,973 - -1.9 552,041 + +0.1 552,041 + +0.6 552,041 + -1.2 552,042 - -1.4 552,042 - -0.8 552,042 - -2.3 552,231 - DDA3937_RS02490 0.24 -0.0 552,231 - DDA3937_RS02490 0.24 -0.2 552,231 - DDA3937_RS02490 0.24 -0.4 552,286 - DDA3937_RS02490 0.29 -0.3 552,414 + DDA3937_RS02490 0.40 -0.8 552,414 + DDA3937_RS02490 0.40 +1.2 552,414 + DDA3937_RS02490 0.40 -1.3 552,414 + DDA3937_RS02490 0.40 +0.4 552,414 + DDA3937_RS02490 0.40 +1.8 552,415 - DDA3937_RS02490 0.40 -0.0 552,415 - DDA3937_RS02490 0.40 -0.1 552,415 - DDA3937_RS02490 0.40 -0.2 552,415 - DDA3937_RS02490 0.40 -0.0 552,415 - DDA3937_RS02490 0.40 -0.4 552,763 - DDA3937_RS02490 0.70 +0.4 552,763 - DDA3937_RS02490 0.70 +1.3 552,946 - DDA3937_RS02490 0.85 -0.8 552,953 - DDA3937_RS02490 0.86 -0.4 552,953 - DDA3937_RS02490 0.86 +0.5 552,972 + DDA3937_RS02490 0.87 +0.2 552,973 - DDA3937_RS02490 0.88 -0.5 553,037 + -1.2 553,049 + -0.5 553,128 + +0.3 553,128 + +2.2 553,129 - -0.6 553,129 - +0.5 553,129 - +0.3 553,129 - +0.1 553,129 - +1.8 553,148 - -0.2 553,157 + -0.2 553,158 - -1.4 553,217 + DDA3937_RS02495 0.29 -0.5 553,415 - -1.0 553,415 - +0.4 553,467 + +0.5 553,468 - -0.6 553,468 - +0.2 553,473 - -0.6 553,516 - +0.6 553,516 - -0.6 553,525 - +1.2 553,525 - -0.9 553,525 - +0.3 553,525 - -2.0 553,670 + -0.8 553,671 - -0.5 553,693 + +0.0 553,694 - -2.4 553,694 - +0.2 553,719 + +1.9 553,945 + DDA3937_RS02500 0.38 -0.3 553,945 + DDA3937_RS02500 0.38 +0.4 553,945 + DDA3937_RS02500 0.38 -0.0 553,945 + DDA3937_RS02500 0.38 +0.6 553,946 - DDA3937_RS02500 0.38 +0.2 553,946 - DDA3937_RS02500 0.38 +2.1 553,946 - DDA3937_RS02500 0.38 -0.2 553,946 - DDA3937_RS02500 0.38 -0.5 553,946 - DDA3937_RS02500 0.38 -0.4 553,946 - DDA3937_RS02500 0.38 +0.1 553,946 - DDA3937_RS02500 0.38 -1.0 554,046 - DDA3937_RS02500 0.50 -0.7
Or see this region's nucleotide sequence