Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS02440 and DDA3937_RS02445 are separated by 430 nucleotides DDA3937_RS02445 and DDA3937_RS02450 are separated by 339 nucleotides
DDA3937_RS02440: DDA3937_RS02440 - hypothetical protein, at 539,842 to 540,714
_RS02440
DDA3937_RS02445: DDA3937_RS02445 - peptide chain release factor 3, at 541,145 to 542,734
_RS02445
DDA3937_RS02450: DDA3937_RS02450 - molecular chaperone OsmY, at 543,074 to 543,730
_RS02450
Position (kb) 541
542
543 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 540.161 kb on + strand, within DDA3937_RS02440 at 540.162 kb on - strand, within DDA3937_RS02440 at 540.162 kb on - strand, within DDA3937_RS02440 at 540.162 kb on - strand, within DDA3937_RS02440 at 540.194 kb on + strand, within DDA3937_RS02440 at 540.194 kb on + strand, within DDA3937_RS02440 at 540.195 kb on - strand, within DDA3937_RS02440 at 540.195 kb on - strand, within DDA3937_RS02440 at 540.209 kb on + strand, within DDA3937_RS02440 at 540.209 kb on + strand, within DDA3937_RS02440 at 540.209 kb on + strand, within DDA3937_RS02440 at 540.209 kb on + strand, within DDA3937_RS02440 at 540.209 kb on + strand, within DDA3937_RS02440 at 540.209 kb on + strand, within DDA3937_RS02440 at 540.209 kb on + strand, within DDA3937_RS02440 at 540.210 kb on - strand, within DDA3937_RS02440 at 540.210 kb on - strand, within DDA3937_RS02440 at 540.210 kb on - strand, within DDA3937_RS02440 at 540.210 kb on - strand, within DDA3937_RS02440 at 540.210 kb on - strand, within DDA3937_RS02440 at 540.210 kb on - strand, within DDA3937_RS02440 at 540.210 kb on - strand, within DDA3937_RS02440 at 540.210 kb on - strand, within DDA3937_RS02440 at 540.210 kb on - strand, within DDA3937_RS02440 at 540.270 kb on + strand, within DDA3937_RS02440 at 540.271 kb on - strand, within DDA3937_RS02440 at 540.296 kb on + strand, within DDA3937_RS02440 at 540.297 kb on - strand, within DDA3937_RS02440 at 540.364 kb on - strand, within DDA3937_RS02440 at 540.589 kb on + strand, within DDA3937_RS02440 at 540.590 kb on - strand, within DDA3937_RS02440 at 540.590 kb on - strand, within DDA3937_RS02440 at 540.590 kb on - strand, within DDA3937_RS02440 at 540.684 kb on + strand at 540.684 kb on + strand at 540.684 kb on + strand at 540.685 kb on - strand at 540.685 kb on - strand at 540.685 kb on - strand at 540.685 kb on - strand at 540.725 kb on + strand at 540.725 kb on + strand at 540.729 kb on + strand at 540.729 kb on + strand at 540.729 kb on + strand at 540.730 kb on - strand at 540.730 kb on - strand at 540.730 kb on - strand at 540.730 kb on - strand at 540.730 kb on - strand at 540.730 kb on - strand at 540.730 kb on - strand at 540.730 kb on - strand at 540.730 kb on - strand at 540.730 kb on - strand at 540.734 kb on + strand at 540.734 kb on + strand at 540.754 kb on - strand at 540.797 kb on + strand at 540.798 kb on - strand at 540.844 kb on - strand at 540.844 kb on - strand at 540.870 kb on + strand at 540.870 kb on + strand at 540.871 kb on - strand at 540.871 kb on - strand at 540.876 kb on - strand at 540.921 kb on + strand at 540.921 kb on + strand at 540.921 kb on + strand at 540.921 kb on + strand at 540.921 kb on + strand at 540.921 kb on + strand at 540.921 kb on + strand at 540.921 kb on + strand at 540.922 kb on - strand at 540.922 kb on - strand at 540.922 kb on - strand at 540.925 kb on + strand at 540.925 kb on + strand at 540.925 kb on + strand at 540.925 kb on + strand at 540.925 kb on + strand at 540.925 kb on + strand at 540.926 kb on - strand at 540.926 kb on - strand at 540.926 kb on - strand at 540.941 kb on + strand at 540.941 kb on + strand at 540.941 kb on + strand at 540.941 kb on + strand at 540.941 kb on + strand at 540.941 kb on + strand at 540.941 kb on + strand at 540.941 kb on + strand at 540.942 kb on - strand at 540.942 kb on - strand at 540.942 kb on - strand at 540.942 kb on - strand at 540.954 kb on + strand at 540.954 kb on + strand at 540.954 kb on + strand at 540.954 kb on + strand at 540.955 kb on - strand at 540.955 kb on - strand at 540.955 kb on - strand at 540.980 kb on + strand at 540.990 kb on + strand at 540.990 kb on + strand at 541.021 kb on + strand at 541.041 kb on + strand at 541.042 kb on - strand at 541.055 kb on + strand at 541.120 kb on + strand at 541.120 kb on + strand at 541.120 kb on + strand at 541.120 kb on + strand at 541.124 kb on + strand at 541.124 kb on + strand at 541.124 kb on + strand at 541.124 kb on + strand at 541.127 kb on + strand at 541.199 kb on - strand at 541.443 kb on - strand, within DDA3937_RS02445 at 541.700 kb on + strand, within DDA3937_RS02445 at 541.845 kb on + strand, within DDA3937_RS02445 at 541.939 kb on - strand, within DDA3937_RS02445 at 542.062 kb on + strand, within DDA3937_RS02445 at 542.651 kb on + strand at 542.652 kb on - strand at 542.652 kb on - strand at 542.798 kb on + strand at 542.892 kb on + strand at 542.892 kb on + strand at 542.892 kb on + strand at 542.892 kb on + strand at 542.892 kb on + strand at 542.892 kb on + strand at 542.892 kb on + strand at 542.892 kb on + strand at 542.892 kb on + strand at 542.892 kb on + strand at 542.892 kb on + strand at 542.892 kb on + strand at 542.893 kb on - strand at 542.893 kb on - strand at 542.893 kb on - strand at 542.893 kb on - strand at 542.896 kb on + strand at 542.897 kb on - strand at 542.897 kb on - strand at 542.897 kb on - strand at 542.897 kb on - strand at 542.897 kb on - strand at 542.897 kb on - strand at 542.898 kb on + strand at 542.898 kb on + strand at 542.898 kb on + strand at 542.899 kb on - strand at 542.899 kb on - strand at 542.899 kb on - strand at 542.902 kb on + strand at 542.930 kb on + strand at 542.935 kb on - strand at 542.941 kb on - strand at 542.941 kb on - strand at 542.941 kb on - strand at 542.945 kb on + strand at 542.946 kb on - strand at 542.960 kb on + strand at 542.960 kb on + strand at 542.960 kb on + strand at 542.960 kb on + strand at 542.961 kb on - strand at 542.961 kb on - strand at 542.961 kb on - strand at 543.069 kb on + strand at 543.221 kb on - strand, within DDA3937_RS02450 at 543.250 kb on + strand, within DDA3937_RS02450 at 543.270 kb on + strand, within DDA3937_RS02450 at 543.271 kb on - strand, within DDA3937_RS02450 at 543.275 kb on + strand, within DDA3937_RS02450 at 543.275 kb on + strand, within DDA3937_RS02450 at 543.276 kb on - strand, within DDA3937_RS02450 at 543.276 kb on - strand, within DDA3937_RS02450 at 543.276 kb on - strand, within DDA3937_RS02450 at 543.474 kb on + strand, within DDA3937_RS02450 at 543.498 kb on + strand, within DDA3937_RS02450 at 543.498 kb on + strand, within DDA3937_RS02450 at 543.498 kb on + strand, within DDA3937_RS02450 at 543.515 kb on + strand, within DDA3937_RS02450 at 543.515 kb on + strand, within DDA3937_RS02450 at 543.515 kb on + strand, within DDA3937_RS02450 at 543.515 kb on + strand, within DDA3937_RS02450 at 543.516 kb on - strand, within DDA3937_RS02450 at 543.516 kb on - strand, within DDA3937_RS02450 at 543.516 kb on - strand, within DDA3937_RS02450 at 543.516 kb on - strand, within DDA3937_RS02450 at 543.516 kb on - strand, within DDA3937_RS02450 at 543.597 kb on + strand, within DDA3937_RS02450 at 543.598 kb on - strand, within DDA3937_RS02450 at 543.598 kb on - strand, within DDA3937_RS02450 at 543.598 kb on - strand, within DDA3937_RS02450 at 543.733 kb on + strand at 543.733 kb on + strand at 543.733 kb on + strand at 543.734 kb on - strand at 543.734 kb on - strand at 543.734 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 540,161 + DDA3937_RS02440 0.37 -2.7 540,162 - DDA3937_RS02440 0.37 -1.4 540,162 - DDA3937_RS02440 0.37 +0.1 540,162 - DDA3937_RS02440 0.37 -0.4 540,194 + DDA3937_RS02440 0.40 -0.2 540,194 + DDA3937_RS02440 0.40 +0.4 540,195 - DDA3937_RS02440 0.40 +0.2 540,195 - DDA3937_RS02440 0.40 +0.2 540,209 + DDA3937_RS02440 0.42 +1.0 540,209 + DDA3937_RS02440 0.42 -0.4 540,209 + DDA3937_RS02440 0.42 -0.6 540,209 + DDA3937_RS02440 0.42 -0.4 540,209 + DDA3937_RS02440 0.42 +1.2 540,209 + DDA3937_RS02440 0.42 -1.0 540,209 + DDA3937_RS02440 0.42 -0.4 540,210 - DDA3937_RS02440 0.42 -0.6 540,210 - DDA3937_RS02440 0.42 +0.4 540,210 - DDA3937_RS02440 0.42 -1.4 540,210 - DDA3937_RS02440 0.42 -0.1 540,210 - DDA3937_RS02440 0.42 -1.1 540,210 - DDA3937_RS02440 0.42 -0.3 540,210 - DDA3937_RS02440 0.42 +1.8 540,210 - DDA3937_RS02440 0.42 +0.3 540,210 - DDA3937_RS02440 0.42 -0.0 540,270 + DDA3937_RS02440 0.49 +0.9 540,271 - DDA3937_RS02440 0.49 +0.5 540,296 + DDA3937_RS02440 0.52 +0.1 540,297 - DDA3937_RS02440 0.52 -0.9 540,364 - DDA3937_RS02440 0.60 -0.2 540,589 + DDA3937_RS02440 0.86 +0.3 540,590 - DDA3937_RS02440 0.86 -0.0 540,590 - DDA3937_RS02440 0.86 +0.4 540,590 - DDA3937_RS02440 0.86 -1.1 540,684 + -1.3 540,684 + +1.6 540,684 + -0.7 540,685 - -0.0 540,685 - -0.2 540,685 - +0.4 540,685 - +0.8 540,725 + -0.1 540,725 + -1.4 540,729 + -2.3 540,729 + -0.1 540,729 + -0.4 540,730 - -0.7 540,730 - -0.4 540,730 - -0.0 540,730 - +0.9 540,730 - -1.0 540,730 - -0.2 540,730 - -0.3 540,730 - -0.1 540,730 - +0.2 540,730 - -0.3 540,734 + -1.1 540,734 + -0.2 540,754 - -2.3 540,797 + -1.6 540,798 - -0.9 540,844 - +0.1 540,844 - +0.5 540,870 + +0.0 540,870 + +0.3 540,871 - +0.1 540,871 - -1.0 540,876 - -0.6 540,921 + +0.1 540,921 + +0.3 540,921 + -0.3 540,921 + +0.2 540,921 + -0.7 540,921 + -1.3 540,921 + +0.1 540,921 + -0.5 540,922 - -0.8 540,922 - -0.3 540,922 - +0.2 540,925 + -1.4 540,925 + -0.6 540,925 + -0.6 540,925 + -0.1 540,925 + -0.9 540,925 + +1.5 540,926 - -2.3 540,926 - -0.8 540,926 - -0.1 540,941 + +2.2 540,941 + -0.0 540,941 + +0.0 540,941 + -0.8 540,941 + -0.7 540,941 + -0.7 540,941 + -0.8 540,941 + -0.3 540,942 - +0.2 540,942 - -1.4 540,942 - -0.7 540,942 - -0.8 540,954 + -0.3 540,954 + -1.0 540,954 + +0.8 540,954 + -1.2 540,955 - -0.6 540,955 - -2.0 540,955 - -0.7 540,980 + -0.6 540,990 + -0.0 540,990 + +1.2 541,021 + +1.2 541,041 + -1.1 541,042 - -1.4 541,055 + +0.1 541,120 + +1.2 541,120 + -0.3 541,120 + +0.1 541,120 + +0.9 541,124 + -1.0 541,124 + +0.5 541,124 + +0.2 541,124 + +1.2 541,127 + -0.1 541,199 - +0.6 541,443 - DDA3937_RS02445 0.19 -0.6 541,700 + DDA3937_RS02445 0.35 -1.0 541,845 + DDA3937_RS02445 0.44 +0.3 541,939 - DDA3937_RS02445 0.50 -1.6 542,062 + DDA3937_RS02445 0.58 +0.8 542,651 + -1.2 542,652 - -0.6 542,652 - -1.0 542,798 + -0.3 542,892 + -0.8 542,892 + -0.3 542,892 + -0.9 542,892 + -0.5 542,892 + +0.3 542,892 + +0.5 542,892 + +3.2 542,892 + -0.3 542,892 + -0.7 542,892 + +0.5 542,892 + -0.0 542,892 + -1.3 542,893 - -2.5 542,893 - +0.2 542,893 - +0.7 542,893 - +0.3 542,896 + -0.4 542,897 - +0.1 542,897 - +1.2 542,897 - -0.4 542,897 - -0.3 542,897 - -1.0 542,897 - -1.4 542,898 + -0.3 542,898 + -0.4 542,898 + +0.2 542,899 - -0.5 542,899 - -0.7 542,899 - -0.5 542,902 + -2.1 542,930 + +1.5 542,935 - -1.1 542,941 - -0.4 542,941 - +0.4 542,941 - -0.1 542,945 + +0.0 542,946 - -1.1 542,960 + +1.3 542,960 + +0.2 542,960 + -1.0 542,960 + -0.4 542,961 - +0.5 542,961 - -0.4 542,961 - -0.6 543,069 + -0.2 543,221 - DDA3937_RS02450 0.22 +1.4 543,250 + DDA3937_RS02450 0.27 +0.1 543,270 + DDA3937_RS02450 0.30 -0.2 543,271 - DDA3937_RS02450 0.30 -0.6 543,275 + DDA3937_RS02450 0.31 -0.1 543,275 + DDA3937_RS02450 0.31 -1.5 543,276 - DDA3937_RS02450 0.31 -0.8 543,276 - DDA3937_RS02450 0.31 -0.6 543,276 - DDA3937_RS02450 0.31 -1.6 543,474 + DDA3937_RS02450 0.61 -0.6 543,498 + DDA3937_RS02450 0.65 +1.1 543,498 + DDA3937_RS02450 0.65 -0.3 543,498 + DDA3937_RS02450 0.65 -0.4 543,515 + DDA3937_RS02450 0.67 -0.4 543,515 + DDA3937_RS02450 0.67 -1.6 543,515 + DDA3937_RS02450 0.67 -0.7 543,515 + DDA3937_RS02450 0.67 -1.4 543,516 - DDA3937_RS02450 0.67 +0.3 543,516 - DDA3937_RS02450 0.67 -0.6 543,516 - DDA3937_RS02450 0.67 +0.2 543,516 - DDA3937_RS02450 0.67 -0.1 543,516 - DDA3937_RS02450 0.67 -0.4 543,597 + DDA3937_RS02450 0.80 -0.2 543,598 - DDA3937_RS02450 0.80 +0.7 543,598 - DDA3937_RS02450 0.80 -1.5 543,598 - DDA3937_RS02450 0.80 -1.5 543,733 + -0.7 543,733 + -1.0 543,733 + -0.4 543,734 - -0.3 543,734 - +0.5 543,734 - -0.1
Or see this region's nucleotide sequence