Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS02130

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS02125 and DDA3937_RS02130 overlap by 38 nucleotidesDDA3937_RS02130 and DDA3937_RS02135 are separated by 106 nucleotidesDDA3937_RS02135 and DDA3937_RS02140 overlap by 4 nucleotides DDA3937_RS02125: DDA3937_RS02125 - MFS transporter, at 472,983 to 474,374 _RS02125 DDA3937_RS02130: DDA3937_RS02130 - PLP-dependent aminotransferase family protein, at 474,337 to 475,821 _RS02130 DDA3937_RS02135: DDA3937_RS02135 - GNAT family N-acetyltransferase, at 475,928 to 476,377 _RS02135 DDA3937_RS02140: DDA3937_RS02140 - carboxymuconolactone decarboxylase family protein, at 476,374 to 476,805 _RS02140 Position (kb) 474 475 476Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 473.404 kb on - strand, within DDA3937_RS02125at 473.414 kb on + strand, within DDA3937_RS02125at 473.414 kb on + strand, within DDA3937_RS02125at 473.414 kb on + strand, within DDA3937_RS02125at 473.415 kb on - strand, within DDA3937_RS02125at 473.415 kb on - strand, within DDA3937_RS02125at 473.415 kb on - strand, within DDA3937_RS02125at 473.534 kb on + strand, within DDA3937_RS02125at 473.534 kb on + strand, within DDA3937_RS02125at 473.534 kb on + strand, within DDA3937_RS02125at 473.534 kb on + strand, within DDA3937_RS02125at 473.535 kb on - strand, within DDA3937_RS02125at 473.535 kb on - strand, within DDA3937_RS02125at 473.535 kb on - strand, within DDA3937_RS02125at 473.535 kb on - strand, within DDA3937_RS02125at 473.535 kb on - strand, within DDA3937_RS02125at 473.535 kb on - strand, within DDA3937_RS02125at 473.536 kb on + strand, within DDA3937_RS02125at 473.536 kb on + strand, within DDA3937_RS02125at 473.536 kb on + strand, within DDA3937_RS02125at 473.537 kb on - strand, within DDA3937_RS02125at 473.537 kb on - strand, within DDA3937_RS02125at 473.743 kb on - strand, within DDA3937_RS02125at 473.772 kb on + strand, within DDA3937_RS02125at 473.773 kb on - strand, within DDA3937_RS02125at 473.801 kb on + strand, within DDA3937_RS02125at 473.801 kb on + strand, within DDA3937_RS02125at 473.801 kb on + strand, within DDA3937_RS02125at 473.809 kb on + strand, within DDA3937_RS02125at 473.828 kb on + strand, within DDA3937_RS02125at 473.829 kb on - strand, within DDA3937_RS02125at 473.884 kb on - strand, within DDA3937_RS02125at 474.007 kb on + strand, within DDA3937_RS02125at 474.008 kb on - strand, within DDA3937_RS02125at 474.102 kb on - strand, within DDA3937_RS02125at 474.373 kb on - strandat 474.487 kb on + strand, within DDA3937_RS02130at 474.488 kb on - strand, within DDA3937_RS02130at 474.643 kb on + strand, within DDA3937_RS02130at 474.643 kb on + strand, within DDA3937_RS02130at 474.643 kb on + strand, within DDA3937_RS02130at 474.644 kb on - strand, within DDA3937_RS02130at 474.644 kb on - strand, within DDA3937_RS02130at 474.684 kb on - strand, within DDA3937_RS02130at 474.701 kb on + strand, within DDA3937_RS02130at 474.724 kb on - strand, within DDA3937_RS02130at 474.724 kb on - strand, within DDA3937_RS02130at 474.751 kb on - strand, within DDA3937_RS02130at 474.789 kb on + strand, within DDA3937_RS02130at 474.790 kb on - strand, within DDA3937_RS02130at 474.851 kb on + strand, within DDA3937_RS02130at 474.851 kb on + strand, within DDA3937_RS02130at 474.851 kb on + strand, within DDA3937_RS02130at 474.852 kb on - strand, within DDA3937_RS02130at 474.899 kb on + strand, within DDA3937_RS02130at 474.899 kb on + strand, within DDA3937_RS02130at 474.899 kb on + strand, within DDA3937_RS02130at 474.900 kb on - strand, within DDA3937_RS02130at 474.904 kb on - strand, within DDA3937_RS02130at 474.904 kb on - strand, within DDA3937_RS02130at 474.918 kb on + strand, within DDA3937_RS02130at 474.940 kb on + strand, within DDA3937_RS02130at 474.974 kb on + strand, within DDA3937_RS02130at 474.974 kb on + strand, within DDA3937_RS02130at 474.975 kb on - strand, within DDA3937_RS02130at 474.975 kb on - strand, within DDA3937_RS02130at 474.975 kb on - strand, within DDA3937_RS02130at 475.051 kb on + strand, within DDA3937_RS02130at 475.109 kb on + strand, within DDA3937_RS02130at 475.110 kb on - strand, within DDA3937_RS02130at 475.220 kb on + strandat 475.220 kb on + strand, within DDA3937_RS02130at 475.221 kb on - strand, within DDA3937_RS02130at 475.221 kb on - strand, within DDA3937_RS02130at 475.258 kb on + strand, within DDA3937_RS02130at 475.258 kb on + strand, within DDA3937_RS02130at 475.259 kb on - strand, within DDA3937_RS02130at 475.259 kb on - strand, within DDA3937_RS02130at 475.259 kb on - strand, within DDA3937_RS02130at 475.261 kb on - strand, within DDA3937_RS02130at 475.340 kb on + strand, within DDA3937_RS02130at 475.340 kb on + strand, within DDA3937_RS02130at 475.341 kb on - strand, within DDA3937_RS02130at 475.350 kb on + strand, within DDA3937_RS02130at 475.350 kb on + strand, within DDA3937_RS02130at 475.351 kb on - strand, within DDA3937_RS02130at 475.593 kb on + strand, within DDA3937_RS02130at 475.620 kb on - strand, within DDA3937_RS02130at 475.643 kb on + strand, within DDA3937_RS02130at 475.696 kb on + strandat 475.696 kb on + strandat 475.723 kb on + strandat 475.724 kb on - strandat 475.760 kb on + strandat 475.825 kb on + strandat 475.826 kb on - strandat 475.826 kb on - strandat 475.826 kb on - strandat 475.839 kb on + strandat 475.839 kb on + strandat 475.846 kb on + strandat 475.846 kb on + strandat 475.846 kb on + strandat 475.846 kb on + strandat 475.847 kb on - strandat 475.847 kb on - strandat 475.847 kb on - strandat 475.880 kb on + strandat 475.880 kb on + strandat 475.880 kb on + strandat 475.880 kb on + strandat 475.881 kb on - strandat 475.907 kb on - strandat 475.914 kb on + strandat 475.915 kb on - strandat 475.957 kb on + strandat 475.958 kb on - strandat 475.974 kb on + strand, within DDA3937_RS02135at 475.974 kb on + strand, within DDA3937_RS02135at 475.974 kb on + strand, within DDA3937_RS02135at 475.974 kb on + strand, within DDA3937_RS02135at 475.984 kb on + strand, within DDA3937_RS02135at 475.985 kb on - strand, within DDA3937_RS02135at 475.985 kb on - strand, within DDA3937_RS02135at 476.013 kb on + strand, within DDA3937_RS02135at 476.013 kb on + strand, within DDA3937_RS02135at 476.013 kb on + strand, within DDA3937_RS02135at 476.043 kb on + strand, within DDA3937_RS02135at 476.044 kb on - strand, within DDA3937_RS02135at 476.044 kb on - strand, within DDA3937_RS02135at 476.157 kb on - strand, within DDA3937_RS02135at 476.157 kb on - strand, within DDA3937_RS02135at 476.172 kb on + strand, within DDA3937_RS02135at 476.172 kb on + strand, within DDA3937_RS02135at 476.172 kb on + strand, within DDA3937_RS02135at 476.172 kb on + strand, within DDA3937_RS02135at 476.173 kb on - strand, within DDA3937_RS02135at 476.228 kb on + strand, within DDA3937_RS02135at 476.228 kb on + strand, within DDA3937_RS02135at 476.228 kb on + strand, within DDA3937_RS02135at 476.228 kb on + strand, within DDA3937_RS02135at 476.228 kb on + strand, within DDA3937_RS02135at 476.229 kb on - strand, within DDA3937_RS02135at 476.280 kb on + strand, within DDA3937_RS02135at 476.284 kb on + strand, within DDA3937_RS02135at 476.284 kb on + strand, within DDA3937_RS02135at 476.284 kb on + strand, within DDA3937_RS02135at 476.284 kb on + strand, within DDA3937_RS02135at 476.285 kb on - strand, within DDA3937_RS02135at 476.285 kb on - strand, within DDA3937_RS02135at 476.285 kb on - strand, within DDA3937_RS02135at 476.292 kb on + strand, within DDA3937_RS02135at 476.345 kb on - strandat 476.371 kb on - strandat 476.373 kb on + strandat 476.373 kb on + strandat 476.373 kb on + strandat 476.373 kb on + strandat 476.374 kb on - strandat 476.374 kb on - strandat 476.385 kb on - strandat 476.385 kb on - strandat 476.385 kb on - strandat 476.419 kb on + strand, within DDA3937_RS02140at 476.419 kb on + strand, within DDA3937_RS02140at 476.420 kb on - strand, within DDA3937_RS02140at 476.480 kb on + strand, within DDA3937_RS02140at 476.480 kb on + strand, within DDA3937_RS02140at 476.481 kb on - strand, within DDA3937_RS02140at 476.481 kb on - strand, within DDA3937_RS02140at 476.491 kb on + strand, within DDA3937_RS02140at 476.492 kb on - strand, within DDA3937_RS02140at 476.492 kb on - strand, within DDA3937_RS02140at 476.492 kb on - strand, within DDA3937_RS02140at 476.492 kb on - strand, within DDA3937_RS02140at 476.492 kb on - strand, within DDA3937_RS02140at 476.567 kb on + strand, within DDA3937_RS02140at 476.567 kb on + strand, within DDA3937_RS02140at 476.568 kb on - strand, within DDA3937_RS02140at 476.568 kb on - strand, within DDA3937_RS02140at 476.610 kb on + strand, within DDA3937_RS02140at 476.610 kb on + strand, within DDA3937_RS02140at 476.610 kb on + strand, within DDA3937_RS02140at 476.611 kb on - strand, within DDA3937_RS02140at 476.700 kb on + strand, within DDA3937_RS02140at 476.701 kb on - strand, within DDA3937_RS02140

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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473,404 - DDA3937_RS02125 0.30 +1.4
473,414 + DDA3937_RS02125 0.31 +0.1
473,414 + DDA3937_RS02125 0.31 -0.0
473,414 + DDA3937_RS02125 0.31 +0.1
473,415 - DDA3937_RS02125 0.31 +0.2
473,415 - DDA3937_RS02125 0.31 -0.8
473,415 - DDA3937_RS02125 0.31 -0.8
473,534 + DDA3937_RS02125 0.40 +0.5
473,534 + DDA3937_RS02125 0.40 +1.4
473,534 + DDA3937_RS02125 0.40 -0.2
473,534 + DDA3937_RS02125 0.40 -0.5
473,535 - DDA3937_RS02125 0.40 -0.3
473,535 - DDA3937_RS02125 0.40 -0.1
473,535 - DDA3937_RS02125 0.40 -0.4
473,535 - DDA3937_RS02125 0.40 -0.9
473,535 - DDA3937_RS02125 0.40 -0.7
473,535 - DDA3937_RS02125 0.40 -1.8
473,536 + DDA3937_RS02125 0.40 +1.8
473,536 + DDA3937_RS02125 0.40 +1.8
473,536 + DDA3937_RS02125 0.40 -0.6
473,537 - DDA3937_RS02125 0.40 -0.3
473,537 - DDA3937_RS02125 0.40 -0.9
473,743 - DDA3937_RS02125 0.55 +1.2
473,772 + DDA3937_RS02125 0.57 +0.7
473,773 - DDA3937_RS02125 0.57 -0.3
473,801 + DDA3937_RS02125 0.59 +0.2
473,801 + DDA3937_RS02125 0.59 +0.6
473,801 + DDA3937_RS02125 0.59 -0.7
473,809 + DDA3937_RS02125 0.59 -0.1
473,828 + DDA3937_RS02125 0.61 +0.6
473,829 - DDA3937_RS02125 0.61 -0.2
473,884 - DDA3937_RS02125 0.65 +0.1
474,007 + DDA3937_RS02125 0.74 -1.1
474,008 - DDA3937_RS02125 0.74 -0.1
474,102 - DDA3937_RS02125 0.80 -0.4
474,373 - +2.0
474,487 + DDA3937_RS02130 0.10 -0.1
474,488 - DDA3937_RS02130 0.10 -0.0
474,643 + DDA3937_RS02130 0.21 +0.7
474,643 + DDA3937_RS02130 0.21 +0.4
474,643 + DDA3937_RS02130 0.21 +0.3
474,644 - DDA3937_RS02130 0.21 +0.1
474,644 - DDA3937_RS02130 0.21 -0.7
474,684 - DDA3937_RS02130 0.23 -0.8
474,701 + DDA3937_RS02130 0.25 +0.5
474,724 - DDA3937_RS02130 0.26 -0.2
474,724 - DDA3937_RS02130 0.26 +0.6
474,751 - DDA3937_RS02130 0.28 +0.8
474,789 + DDA3937_RS02130 0.30 +1.6
474,790 - DDA3937_RS02130 0.31 -0.6
474,851 + DDA3937_RS02130 0.35 -0.4
474,851 + DDA3937_RS02130 0.35 +0.5
474,851 + DDA3937_RS02130 0.35 -0.5
474,852 - DDA3937_RS02130 0.35 -0.8
474,899 + DDA3937_RS02130 0.38 +0.9
474,899 + DDA3937_RS02130 0.38 +0.3
474,899 + DDA3937_RS02130 0.38 -1.8
474,900 - DDA3937_RS02130 0.38 -0.4
474,904 - DDA3937_RS02130 0.38 +0.0
474,904 - DDA3937_RS02130 0.38 +1.5
474,918 + DDA3937_RS02130 0.39 +0.9
474,940 + DDA3937_RS02130 0.41 +0.8
474,974 + DDA3937_RS02130 0.43 -1.1
474,974 + DDA3937_RS02130 0.43 -2.9
474,975 - DDA3937_RS02130 0.43 -1.1
474,975 - DDA3937_RS02130 0.43 +0.6
474,975 - DDA3937_RS02130 0.43 -0.6
475,051 + DDA3937_RS02130 0.48 +0.4
475,109 + DDA3937_RS02130 0.52 -1.4
475,110 - DDA3937_RS02130 0.52 -0.2
475,220 + +0.2
475,220 + DDA3937_RS02130 0.59 -0.6
475,221 - DDA3937_RS02130 0.60 +0.1
475,221 - DDA3937_RS02130 0.60 +0.6
475,258 + DDA3937_RS02130 0.62 -0.2
475,258 + DDA3937_RS02130 0.62 -0.0
475,259 - DDA3937_RS02130 0.62 +0.3
475,259 - DDA3937_RS02130 0.62 +0.1
475,259 - DDA3937_RS02130 0.62 +0.2
475,261 - DDA3937_RS02130 0.62 -0.1
475,340 + DDA3937_RS02130 0.68 +0.3
475,340 + DDA3937_RS02130 0.68 -2.0
475,341 - DDA3937_RS02130 0.68 +0.7
475,350 + DDA3937_RS02130 0.68 -0.1
475,350 + DDA3937_RS02130 0.68 +0.8
475,351 - DDA3937_RS02130 0.68 -0.6
475,593 + DDA3937_RS02130 0.85 +1.2
475,620 - DDA3937_RS02130 0.86 -1.2
475,643 + DDA3937_RS02130 0.88 +0.0
475,696 + -0.6
475,696 + -0.2
475,723 + +1.2
475,724 - +1.0
475,760 + -1.2
475,825 + +0.1
475,826 - -1.4
475,826 - +0.5
475,826 - +0.2
475,839 + +0.0
475,839 + -0.6
475,846 + -0.0
475,846 + +0.5
475,846 + -0.5
475,846 + -1.1
475,847 - +0.1
475,847 - -1.0
475,847 - +0.1
475,880 + +0.0
475,880 + -1.4
475,880 + +0.6
475,880 + -0.4
475,881 - +0.4
475,907 - -0.2
475,914 + -0.1
475,915 - -1.3
475,957 + -0.0
475,958 - +1.1
475,974 + DDA3937_RS02135 0.10 -0.2
475,974 + DDA3937_RS02135 0.10 -0.4
475,974 + DDA3937_RS02135 0.10 +0.2
475,974 + DDA3937_RS02135 0.10 -0.6
475,984 + DDA3937_RS02135 0.12 -0.6
475,985 - DDA3937_RS02135 0.13 -1.5
475,985 - DDA3937_RS02135 0.13 +0.2
476,013 + DDA3937_RS02135 0.19 -0.1
476,013 + DDA3937_RS02135 0.19 -0.4
476,013 + DDA3937_RS02135 0.19 -0.2
476,043 + DDA3937_RS02135 0.26 -0.3
476,044 - DDA3937_RS02135 0.26 -0.4
476,044 - DDA3937_RS02135 0.26 -0.1
476,157 - DDA3937_RS02135 0.51 +0.2
476,157 - DDA3937_RS02135 0.51 -0.1
476,172 + DDA3937_RS02135 0.54 +0.2
476,172 + DDA3937_RS02135 0.54 -1.3
476,172 + DDA3937_RS02135 0.54 +0.4
476,172 + DDA3937_RS02135 0.54 +0.5
476,173 - DDA3937_RS02135 0.54 +0.5
476,228 + DDA3937_RS02135 0.67 +0.5
476,228 + DDA3937_RS02135 0.67 +0.3
476,228 + DDA3937_RS02135 0.67 -0.8
476,228 + DDA3937_RS02135 0.67 -0.2
476,228 + DDA3937_RS02135 0.67 -1.2
476,229 - DDA3937_RS02135 0.67 -0.6
476,280 + DDA3937_RS02135 0.78 -1.9
476,284 + DDA3937_RS02135 0.79 -0.1
476,284 + DDA3937_RS02135 0.79 +0.9
476,284 + DDA3937_RS02135 0.79 -0.0
476,284 + DDA3937_RS02135 0.79 +0.1
476,285 - DDA3937_RS02135 0.79 -0.5
476,285 - DDA3937_RS02135 0.79 -1.0
476,285 - DDA3937_RS02135 0.79 -0.0
476,292 + DDA3937_RS02135 0.81 +2.2
476,345 - -1.0
476,371 - -0.6
476,373 + -0.2
476,373 + +0.5
476,373 + -0.2
476,373 + -0.8
476,374 - +1.2
476,374 - +1.2
476,385 - +0.1
476,385 - -0.9
476,385 - -0.1
476,419 + DDA3937_RS02140 0.10 -0.4
476,419 + DDA3937_RS02140 0.10 +0.3
476,420 - DDA3937_RS02140 0.11 +0.5
476,480 + DDA3937_RS02140 0.25 +1.2
476,480 + DDA3937_RS02140 0.25 -0.1
476,481 - DDA3937_RS02140 0.25 -0.5
476,481 - DDA3937_RS02140 0.25 -0.0
476,491 + DDA3937_RS02140 0.27 +0.2
476,492 - DDA3937_RS02140 0.27 -0.7
476,492 - DDA3937_RS02140 0.27 -1.1
476,492 - DDA3937_RS02140 0.27 -0.3
476,492 - DDA3937_RS02140 0.27 +0.9
476,492 - DDA3937_RS02140 0.27 +0.5
476,567 + DDA3937_RS02140 0.45 -1.3
476,567 + DDA3937_RS02140 0.45 +0.8
476,568 - DDA3937_RS02140 0.45 +0.0
476,568 - DDA3937_RS02140 0.45 -0.8
476,610 + DDA3937_RS02140 0.55 -0.1
476,610 + DDA3937_RS02140 0.55 +0.2
476,610 + DDA3937_RS02140 0.55 +0.5
476,611 - DDA3937_RS02140 0.55 -1.1
476,700 + DDA3937_RS02140 0.75 -0.1
476,701 - DDA3937_RS02140 0.76 +0.2

Or see this region's nucleotide sequence