Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS02030 and DDA3937_RS02035 are separated by 2 nucleotides DDA3937_RS02035 and DDA3937_RS02040 overlap by 4 nucleotides DDA3937_RS02040 and DDA3937_RS02045 overlap by 8 nucleotides
DDA3937_RS02030: DDA3937_RS02030 - integrase domain-containing protein, at 458,532 to 459,413
_RS02030
DDA3937_RS02035: DDA3937_RS02035 - AlpA family transcriptional regulator, at 459,416 to 459,616
_RS02035
DDA3937_RS02040: DDA3937_RS02040 - ash family protein, at 459,613 to 460,152
_RS02040
DDA3937_RS02045: DDA3937_RS02045 - AAA family ATPase, at 460,145 to 462,190
_RS02045
Position (kb) 458
459
460 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 457.532 kb on - strand at 457.605 kb on + strand at 457.606 kb on - strand at 457.656 kb on - strand at 457.656 kb on - strand at 457.686 kb on - strand at 457.686 kb on - strand at 457.695 kb on + strand at 457.695 kb on + strand at 457.734 kb on + strand at 457.734 kb on + strand at 457.734 kb on + strand at 457.735 kb on - strand at 457.735 kb on - strand at 457.766 kb on + strand at 457.766 kb on + strand at 457.775 kb on + strand at 457.804 kb on + strand at 457.804 kb on + strand at 457.805 kb on - strand at 457.805 kb on - strand at 457.805 kb on - strand at 457.805 kb on - strand at 457.805 kb on - strand at 457.806 kb on + strand at 457.806 kb on + strand at 457.806 kb on + strand at 457.806 kb on + strand at 457.806 kb on + strand at 457.806 kb on + strand at 457.806 kb on + strand at 457.807 kb on - strand at 457.807 kb on - strand at 457.807 kb on - strand at 457.807 kb on - strand at 457.807 kb on - strand at 457.817 kb on + strand at 457.895 kb on + strand at 457.915 kb on - strand at 457.915 kb on - strand at 457.961 kb on + strand at 457.962 kb on - strand at 457.965 kb on + strand at 457.966 kb on - strand at 457.983 kb on + strand at 457.983 kb on + strand at 457.998 kb on + strand at 457.998 kb on + strand at 457.998 kb on + strand at 457.998 kb on + strand at 457.998 kb on + strand at 457.999 kb on - strand at 458.017 kb on + strand at 458.017 kb on + strand at 458.048 kb on + strand at 458.049 kb on - strand at 458.067 kb on + strand at 458.114 kb on - strand at 458.114 kb on - strand at 458.114 kb on - strand at 458.114 kb on - strand at 458.114 kb on - strand at 458.134 kb on + strand at 458.134 kb on + strand at 458.134 kb on + strand at 458.147 kb on + strand at 458.148 kb on - strand at 458.148 kb on - strand at 458.217 kb on - strand at 458.333 kb on + strand at 458.464 kb on - strand at 458.493 kb on - strand at 458.493 kb on - strand at 458.525 kb on + strand at 458.525 kb on + strand at 458.588 kb on + strand at 458.612 kb on + strand at 458.669 kb on - strand, within DDA3937_RS02030 at 458.691 kb on - strand, within DDA3937_RS02030 at 458.700 kb on + strand, within DDA3937_RS02030 at 458.700 kb on + strand, within DDA3937_RS02030 at 458.700 kb on + strand, within DDA3937_RS02030 at 458.700 kb on + strand, within DDA3937_RS02030 at 458.700 kb on + strand, within DDA3937_RS02030 at 458.700 kb on + strand, within DDA3937_RS02030 at 458.700 kb on + strand, within DDA3937_RS02030 at 458.700 kb on + strand, within DDA3937_RS02030 at 458.700 kb on + strand, within DDA3937_RS02030 at 458.701 kb on - strand, within DDA3937_RS02030 at 458.701 kb on - strand, within DDA3937_RS02030 at 458.701 kb on - strand, within DDA3937_RS02030 at 458.701 kb on - strand, within DDA3937_RS02030 at 458.701 kb on - strand, within DDA3937_RS02030 at 458.701 kb on - strand, within DDA3937_RS02030 at 458.701 kb on - strand, within DDA3937_RS02030 at 458.701 kb on - strand, within DDA3937_RS02030 at 458.701 kb on - strand, within DDA3937_RS02030 at 458.705 kb on - strand, within DDA3937_RS02030 at 458.705 kb on - strand, within DDA3937_RS02030 at 458.868 kb on + strand, within DDA3937_RS02030 at 458.868 kb on + strand, within DDA3937_RS02030 at 458.868 kb on + strand, within DDA3937_RS02030 at 458.868 kb on + strand, within DDA3937_RS02030 at 458.868 kb on + strand, within DDA3937_RS02030 at 458.868 kb on + strand, within DDA3937_RS02030 at 458.868 kb on + strand, within DDA3937_RS02030 at 458.868 kb on + strand, within DDA3937_RS02030 at 458.868 kb on + strand at 458.868 kb on + strand, within DDA3937_RS02030 at 458.868 kb on + strand, within DDA3937_RS02030 at 458.868 kb on + strand, within DDA3937_RS02030 at 458.868 kb on + strand, within DDA3937_RS02030 at 458.868 kb on + strand, within DDA3937_RS02030 at 458.868 kb on + strand, within DDA3937_RS02030 at 458.868 kb on + strand, within DDA3937_RS02030 at 458.868 kb on + strand, within DDA3937_RS02030 at 458.868 kb on + strand, within DDA3937_RS02030 at 458.868 kb on + strand, within DDA3937_RS02030 at 458.868 kb on + strand, within DDA3937_RS02030 at 458.868 kb on + strand, within DDA3937_RS02030 at 458.868 kb on + strand, within DDA3937_RS02030 at 458.869 kb on - strand, within DDA3937_RS02030 at 458.869 kb on - strand, within DDA3937_RS02030 at 458.869 kb on - strand, within DDA3937_RS02030 at 458.869 kb on - strand, within DDA3937_RS02030 at 458.869 kb on - strand, within DDA3937_RS02030 at 458.869 kb on - strand, within DDA3937_RS02030 at 458.869 kb on - strand, within DDA3937_RS02030 at 458.869 kb on - strand, within DDA3937_RS02030 at 458.869 kb on - strand at 458.869 kb on - strand, within DDA3937_RS02030 at 458.869 kb on - strand, within DDA3937_RS02030 at 458.869 kb on - strand, within DDA3937_RS02030 at 458.869 kb on - strand, within DDA3937_RS02030 at 458.869 kb on - strand, within DDA3937_RS02030 at 458.869 kb on - strand, within DDA3937_RS02030 at 458.869 kb on - strand, within DDA3937_RS02030 at 459.112 kb on + strand, within DDA3937_RS02030 at 459.113 kb on - strand, within DDA3937_RS02030 at 459.161 kb on + strand, within DDA3937_RS02030 at 459.171 kb on + strand, within DDA3937_RS02030 at 459.391 kb on - strand at 459.391 kb on - strand at 459.411 kb on + strand at 459.412 kb on - strand at 459.485 kb on + strand, within DDA3937_RS02035 at 459.485 kb on + strand, within DDA3937_RS02035 at 459.485 kb on + strand, within DDA3937_RS02035 at 459.485 kb on + strand, within DDA3937_RS02035 at 459.485 kb on + strand, within DDA3937_RS02035 at 459.486 kb on - strand, within DDA3937_RS02035 at 459.486 kb on - strand, within DDA3937_RS02035 at 459.486 kb on - strand, within DDA3937_RS02035 at 459.486 kb on - strand, within DDA3937_RS02035 at 459.486 kb on - strand, within DDA3937_RS02035 at 459.489 kb on - strand, within DDA3937_RS02035 at 459.653 kb on - strand at 459.653 kb on - strand at 459.654 kb on + strand at 459.654 kb on + strand at 459.655 kb on - strand at 459.655 kb on - strand at 459.729 kb on - strand, within DDA3937_RS02040 at 459.729 kb on - strand, within DDA3937_RS02040 at 459.729 kb on - strand, within DDA3937_RS02040 at 459.729 kb on - strand, within DDA3937_RS02040 at 459.729 kb on - strand, within DDA3937_RS02040 at 459.729 kb on - strand, within DDA3937_RS02040 at 459.729 kb on - strand, within DDA3937_RS02040 at 459.729 kb on - strand, within DDA3937_RS02040 at 459.729 kb on - strand, within DDA3937_RS02040 at 459.753 kb on - strand, within DDA3937_RS02040 at 459.852 kb on + strand, within DDA3937_RS02040 at 459.929 kb on + strand, within DDA3937_RS02040 at 459.929 kb on + strand, within DDA3937_RS02040 at 459.930 kb on - strand, within DDA3937_RS02040 at 459.930 kb on - strand, within DDA3937_RS02040 at 459.930 kb on - strand, within DDA3937_RS02040 at 459.930 kb on - strand, within DDA3937_RS02040 at 459.930 kb on - strand, within DDA3937_RS02040 at 459.933 kb on + strand, within DDA3937_RS02040 at 459.933 kb on + strand, within DDA3937_RS02040 at 459.933 kb on + strand, within DDA3937_RS02040 at 459.934 kb on - strand, within DDA3937_RS02040 at 459.975 kb on + strand, within DDA3937_RS02040 at 459.975 kb on + strand, within DDA3937_RS02040 at 459.976 kb on - strand, within DDA3937_RS02040 at 459.976 kb on - strand, within DDA3937_RS02040 at 459.976 kb on - strand, within DDA3937_RS02040 at 459.979 kb on + strand, within DDA3937_RS02040 at 459.979 kb on + strand, within DDA3937_RS02040 at 459.979 kb on + strand, within DDA3937_RS02040 at 459.979 kb on + strand, within DDA3937_RS02040 at 459.979 kb on + strand, within DDA3937_RS02040 at 459.979 kb on + strand, within DDA3937_RS02040 at 459.979 kb on + strand, within DDA3937_RS02040 at 459.979 kb on + strand, within DDA3937_RS02040 at 459.979 kb on + strand, within DDA3937_RS02040 at 459.979 kb on + strand, within DDA3937_RS02040 at 459.979 kb on + strand, within DDA3937_RS02040 at 459.979 kb on + strand, within DDA3937_RS02040 at 459.979 kb on + strand, within DDA3937_RS02040 at 459.979 kb on + strand, within DDA3937_RS02040 at 459.980 kb on - strand, within DDA3937_RS02040 at 459.980 kb on - strand, within DDA3937_RS02040 at 459.980 kb on - strand, within DDA3937_RS02040 at 459.980 kb on - strand, within DDA3937_RS02040 at 459.980 kb on - strand, within DDA3937_RS02040 at 459.980 kb on - strand, within DDA3937_RS02040 at 459.980 kb on - strand, within DDA3937_RS02040 at 459.980 kb on - strand, within DDA3937_RS02040 at 459.980 kb on - strand, within DDA3937_RS02040 at 459.980 kb on - strand, within DDA3937_RS02040 at 459.980 kb on - strand, within DDA3937_RS02040 at 459.980 kb on - strand, within DDA3937_RS02040 at 459.980 kb on - strand, within DDA3937_RS02040 at 459.980 kb on - strand, within DDA3937_RS02040 at 459.980 kb on - strand, within DDA3937_RS02040 at 459.980 kb on - strand, within DDA3937_RS02040 at 459.980 kb on - strand, within DDA3937_RS02040 at 459.982 kb on - strand, within DDA3937_RS02040 at 460.092 kb on - strand, within DDA3937_RS02040 at 460.150 kb on + strand at 460.150 kb on + strand at 460.151 kb on - strand at 460.151 kb on - strand at 460.212 kb on + strand at 460.212 kb on + strand at 460.212 kb on + strand at 460.212 kb on + strand at 460.212 kb on + strand at 460.212 kb on + strand at 460.213 kb on - strand at 460.213 kb on - strand at 460.213 kb on - strand at 460.213 kb on - strand at 460.213 kb on - strand at 460.216 kb on + strand at 460.216 kb on + strand at 460.216 kb on + strand at 460.217 kb on - strand at 460.217 kb on - strand at 460.220 kb on + strand at 460.220 kb on + strand at 460.220 kb on + strand at 460.221 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 457,532 - +0.2 457,605 + +0.2 457,606 - -0.7 457,656 - -0.3 457,656 - -0.8 457,686 - +0.1 457,686 - -0.0 457,695 + -0.2 457,695 + +0.0 457,734 + +0.0 457,734 + -1.2 457,734 + -1.3 457,735 - +0.8 457,735 - -0.4 457,766 + -0.2 457,766 + -1.9 457,775 + +0.2 457,804 + +0.0 457,804 + +0.2 457,805 - -0.3 457,805 - -0.3 457,805 - -0.1 457,805 - -1.1 457,805 - -0.1 457,806 + +0.0 457,806 + +0.6 457,806 + +0.4 457,806 + -0.9 457,806 + -0.1 457,806 + -0.4 457,806 + -0.0 457,807 - +0.3 457,807 - +0.0 457,807 - +0.0 457,807 - +0.8 457,807 - -0.4 457,817 + -0.8 457,895 + +1.2 457,915 - -0.6 457,915 - +0.5 457,961 + +1.9 457,962 - +0.1 457,965 + -0.1 457,966 - +0.2 457,983 + -0.5 457,983 + +0.4 457,998 + -0.9 457,998 + -0.6 457,998 + -0.9 457,998 + -0.1 457,998 + -0.1 457,999 - -0.1 458,017 + -0.1 458,017 + +0.3 458,048 + +0.0 458,049 - -0.3 458,067 + -0.4 458,114 - +0.6 458,114 - -0.2 458,114 - -1.1 458,114 - -0.0 458,114 - -0.1 458,134 + -0.2 458,134 + -0.5 458,134 + +0.1 458,147 + +1.7 458,148 - -1.0 458,148 - -0.4 458,217 - -0.6 458,333 + +0.8 458,464 - +0.0 458,493 - -1.8 458,493 - -0.6 458,525 + -0.2 458,525 + +0.4 458,588 + -0.2 458,612 + -0.8 458,669 - DDA3937_RS02030 0.16 +1.6 458,691 - DDA3937_RS02030 0.18 -0.5 458,700 + DDA3937_RS02030 0.19 +0.1 458,700 + DDA3937_RS02030 0.19 -0.0 458,700 + DDA3937_RS02030 0.19 +0.2 458,700 + DDA3937_RS02030 0.19 +0.7 458,700 + DDA3937_RS02030 0.19 +0.0 458,700 + DDA3937_RS02030 0.19 -0.1 458,700 + DDA3937_RS02030 0.19 +0.2 458,700 + DDA3937_RS02030 0.19 +0.1 458,700 + DDA3937_RS02030 0.19 +0.8 458,701 - DDA3937_RS02030 0.19 +0.5 458,701 - DDA3937_RS02030 0.19 +1.8 458,701 - DDA3937_RS02030 0.19 -2.2 458,701 - DDA3937_RS02030 0.19 -0.8 458,701 - DDA3937_RS02030 0.19 +0.1 458,701 - DDA3937_RS02030 0.19 -1.1 458,701 - DDA3937_RS02030 0.19 -0.9 458,701 - DDA3937_RS02030 0.19 +0.5 458,701 - DDA3937_RS02030 0.19 +0.9 458,705 - DDA3937_RS02030 0.20 +0.2 458,705 - DDA3937_RS02030 0.20 -0.3 458,868 + DDA3937_RS02030 0.38 +0.8 458,868 + DDA3937_RS02030 0.38 -0.6 458,868 + DDA3937_RS02030 0.38 -0.5 458,868 + DDA3937_RS02030 0.38 +0.2 458,868 + DDA3937_RS02030 0.38 -0.6 458,868 + DDA3937_RS02030 0.38 -0.8 458,868 + DDA3937_RS02030 0.38 +0.2 458,868 + DDA3937_RS02030 0.38 -0.9 458,868 + +1.8 458,868 + DDA3937_RS02030 0.38 -0.1 458,868 + DDA3937_RS02030 0.38 +0.2 458,868 + DDA3937_RS02030 0.38 +0.2 458,868 + DDA3937_RS02030 0.38 +0.2 458,868 + DDA3937_RS02030 0.38 +0.6 458,868 + DDA3937_RS02030 0.38 -0.7 458,868 + DDA3937_RS02030 0.38 -0.4 458,868 + DDA3937_RS02030 0.38 +0.8 458,868 + DDA3937_RS02030 0.38 -0.1 458,868 + DDA3937_RS02030 0.38 -0.6 458,868 + DDA3937_RS02030 0.38 +0.4 458,868 + DDA3937_RS02030 0.38 +0.3 458,868 + DDA3937_RS02030 0.38 +0.8 458,869 - DDA3937_RS02030 0.38 +0.1 458,869 - DDA3937_RS02030 0.38 -0.1 458,869 - DDA3937_RS02030 0.38 +0.6 458,869 - DDA3937_RS02030 0.38 -0.7 458,869 - DDA3937_RS02030 0.38 +0.1 458,869 - DDA3937_RS02030 0.38 -0.5 458,869 - DDA3937_RS02030 0.38 +0.1 458,869 - DDA3937_RS02030 0.38 -0.8 458,869 - +0.2 458,869 - DDA3937_RS02030 0.38 +0.4 458,869 - DDA3937_RS02030 0.38 -0.7 458,869 - DDA3937_RS02030 0.38 -0.3 458,869 - DDA3937_RS02030 0.38 -0.7 458,869 - DDA3937_RS02030 0.38 +0.4 458,869 - DDA3937_RS02030 0.38 -1.3 458,869 - DDA3937_RS02030 0.38 -1.0 459,112 + DDA3937_RS02030 0.66 +0.3 459,113 - DDA3937_RS02030 0.66 -0.6 459,161 + DDA3937_RS02030 0.71 -0.3 459,171 + DDA3937_RS02030 0.72 -0.3 459,391 - -0.1 459,391 - -0.7 459,411 + -0.8 459,412 - +0.2 459,485 + DDA3937_RS02035 0.34 +0.8 459,485 + DDA3937_RS02035 0.34 +0.7 459,485 + DDA3937_RS02035 0.34 -0.1 459,485 + DDA3937_RS02035 0.34 +0.4 459,485 + DDA3937_RS02035 0.34 -0.0 459,486 - DDA3937_RS02035 0.35 +0.8 459,486 - DDA3937_RS02035 0.35 -0.2 459,486 - DDA3937_RS02035 0.35 +0.2 459,486 - DDA3937_RS02035 0.35 +0.8 459,486 - DDA3937_RS02035 0.35 +0.4 459,489 - DDA3937_RS02035 0.36 +0.2 459,653 - -0.8 459,653 - -0.3 459,654 + -0.8 459,654 + +0.1 459,655 - +0.1 459,655 - -1.8 459,729 - DDA3937_RS02040 0.21 +0.7 459,729 - DDA3937_RS02040 0.21 +0.6 459,729 - DDA3937_RS02040 0.21 -0.0 459,729 - DDA3937_RS02040 0.21 -1.4 459,729 - DDA3937_RS02040 0.21 +0.6 459,729 - DDA3937_RS02040 0.21 -1.6 459,729 - DDA3937_RS02040 0.21 -1.3 459,729 - DDA3937_RS02040 0.21 +0.3 459,729 - DDA3937_RS02040 0.21 -0.9 459,753 - DDA3937_RS02040 0.26 -0.6 459,852 + DDA3937_RS02040 0.44 -0.1 459,929 + DDA3937_RS02040 0.59 -1.9 459,929 + DDA3937_RS02040 0.59 +1.4 459,930 - DDA3937_RS02040 0.59 -0.1 459,930 - DDA3937_RS02040 0.59 -1.3 459,930 - DDA3937_RS02040 0.59 +1.9 459,930 - DDA3937_RS02040 0.59 +0.9 459,930 - DDA3937_RS02040 0.59 -0.1 459,933 + DDA3937_RS02040 0.59 +0.0 459,933 + DDA3937_RS02040 0.59 -0.4 459,933 + DDA3937_RS02040 0.59 +0.3 459,934 - DDA3937_RS02040 0.59 -0.9 459,975 + DDA3937_RS02040 0.67 +0.2 459,975 + DDA3937_RS02040 0.67 +0.2 459,976 - DDA3937_RS02040 0.67 -1.6 459,976 - DDA3937_RS02040 0.67 -0.6 459,976 - DDA3937_RS02040 0.67 +1.0 459,979 + DDA3937_RS02040 0.68 -0.4 459,979 + DDA3937_RS02040 0.68 +0.2 459,979 + DDA3937_RS02040 0.68 +0.2 459,979 + DDA3937_RS02040 0.68 -0.2 459,979 + DDA3937_RS02040 0.68 +0.4 459,979 + DDA3937_RS02040 0.68 +1.1 459,979 + DDA3937_RS02040 0.68 +0.9 459,979 + DDA3937_RS02040 0.68 -0.4 459,979 + DDA3937_RS02040 0.68 -0.1 459,979 + DDA3937_RS02040 0.68 -0.4 459,979 + DDA3937_RS02040 0.68 +1.2 459,979 + DDA3937_RS02040 0.68 -0.4 459,979 + DDA3937_RS02040 0.68 -1.2 459,979 + DDA3937_RS02040 0.68 -1.9 459,980 - DDA3937_RS02040 0.68 -2.0 459,980 - DDA3937_RS02040 0.68 -0.5 459,980 - DDA3937_RS02040 0.68 -0.8 459,980 - DDA3937_RS02040 0.68 +0.2 459,980 - DDA3937_RS02040 0.68 -2.8 459,980 - DDA3937_RS02040 0.68 +2.2 459,980 - DDA3937_RS02040 0.68 +2.8 459,980 - DDA3937_RS02040 0.68 +0.1 459,980 - DDA3937_RS02040 0.68 -0.5 459,980 - DDA3937_RS02040 0.68 +0.2 459,980 - DDA3937_RS02040 0.68 -0.3 459,980 - DDA3937_RS02040 0.68 -1.6 459,980 - DDA3937_RS02040 0.68 -0.4 459,980 - DDA3937_RS02040 0.68 +0.6 459,980 - DDA3937_RS02040 0.68 +0.1 459,980 - DDA3937_RS02040 0.68 -0.5 459,980 - DDA3937_RS02040 0.68 +0.0 459,982 - DDA3937_RS02040 0.68 -1.3 460,092 - DDA3937_RS02040 0.89 -0.2 460,150 + -0.1 460,150 + +1.2 460,151 - +1.4 460,151 - -0.1 460,212 + -1.4 460,212 + -0.9 460,212 + +0.1 460,212 + -1.5 460,212 + -0.3 460,212 + -0.3 460,213 - -0.4 460,213 - -1.1 460,213 - +0.2 460,213 - -0.0 460,213 - -0.5 460,216 + -0.2 460,216 + +1.2 460,216 + +0.2 460,217 - +0.1 460,217 - -1.6 460,220 + +0.7 460,220 + -1.6 460,220 + +0.3 460,221 - -0.9
Or see this region's nucleotide sequence