Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS02020 and DDA3937_RS02025 overlap by 20 nucleotides
DDA3937_RS02020: DDA3937_RS02020 - DEAD/DEAH box helicase, at 453,448 to 456,006
_RS02020
DDA3937_RS02025: DDA3937_RS02025 - DUF1837 domain-containing protein, at 455,987 to 457,027
_RS02025
Position (kb) 455
456
457
458 Strain fitness (log2 ratio) -2
-1
0
1
2 at 455.014 kb on + strand, within DDA3937_RS02020 at 455.042 kb on + strand, within DDA3937_RS02020 at 455.056 kb on + strand, within DDA3937_RS02020 at 455.062 kb on + strand, within DDA3937_RS02020 at 455.227 kb on + strand, within DDA3937_RS02020 at 455.228 kb on - strand, within DDA3937_RS02020 at 455.228 kb on - strand, within DDA3937_RS02020 at 455.233 kb on - strand, within DDA3937_RS02020 at 455.236 kb on + strand, within DDA3937_RS02020 at 455.236 kb on + strand, within DDA3937_RS02020 at 455.246 kb on + strand, within DDA3937_RS02020 at 455.347 kb on - strand, within DDA3937_RS02020 at 455.455 kb on - strand, within DDA3937_RS02020 at 455.523 kb on + strand, within DDA3937_RS02020 at 455.982 kb on + strand at 456.067 kb on - strand at 456.139 kb on - strand, within DDA3937_RS02025 at 456.485 kb on - strand, within DDA3937_RS02025 at 456.518 kb on + strand, within DDA3937_RS02025 at 456.550 kb on + strand, within DDA3937_RS02025 at 456.602 kb on - strand, within DDA3937_RS02025 at 456.607 kb on - strand, within DDA3937_RS02025 at 456.843 kb on - strand, within DDA3937_RS02025 at 456.887 kb on - strand, within DDA3937_RS02025 at 456.912 kb on - strand, within DDA3937_RS02025 at 456.935 kb on - strand at 456.964 kb on + strand at 456.998 kb on - strand at 457.034 kb on + strand at 457.034 kb on + strand at 457.035 kb on - strand at 457.060 kb on + strand at 457.065 kb on - strand at 457.099 kb on + strand at 457.099 kb on + strand at 457.117 kb on + strand at 457.117 kb on + strand at 457.118 kb on - strand at 457.139 kb on - strand at 457.139 kb on - strand at 457.167 kb on + strand at 457.167 kb on + strand at 457.167 kb on + strand at 457.168 kb on - strand at 457.168 kb on - strand at 457.168 kb on - strand at 457.266 kb on - strand at 457.336 kb on + strand at 457.336 kb on + strand at 457.427 kb on + strand at 457.428 kb on - strand at 457.444 kb on - strand at 457.448 kb on + strand at 457.448 kb on + strand at 457.448 kb on + strand at 457.448 kb on + strand at 457.448 kb on + strand at 457.449 kb on - strand at 457.449 kb on - strand at 457.452 kb on + strand at 457.452 kb on + strand at 457.453 kb on - strand at 457.454 kb on + strand at 457.454 kb on + strand at 457.455 kb on - strand at 457.460 kb on - strand at 457.470 kb on + strand at 457.480 kb on - strand at 457.480 kb on - strand at 457.483 kb on + strand at 457.483 kb on + strand at 457.483 kb on + strand at 457.484 kb on - strand at 457.496 kb on - strand at 457.532 kb on - strand at 457.605 kb on + strand at 457.606 kb on - strand at 457.656 kb on - strand at 457.656 kb on - strand at 457.686 kb on - strand at 457.686 kb on - strand at 457.695 kb on + strand at 457.695 kb on + strand at 457.734 kb on + strand at 457.734 kb on + strand at 457.734 kb on + strand at 457.735 kb on - strand at 457.735 kb on - strand at 457.766 kb on + strand at 457.766 kb on + strand at 457.775 kb on + strand at 457.804 kb on + strand at 457.804 kb on + strand at 457.805 kb on - strand at 457.805 kb on - strand at 457.805 kb on - strand at 457.805 kb on - strand at 457.805 kb on - strand at 457.806 kb on + strand at 457.806 kb on + strand at 457.806 kb on + strand at 457.806 kb on + strand at 457.806 kb on + strand at 457.806 kb on + strand at 457.806 kb on + strand at 457.807 kb on - strand at 457.807 kb on - strand at 457.807 kb on - strand at 457.807 kb on - strand at 457.807 kb on - strand at 457.817 kb on + strand at 457.895 kb on + strand at 457.915 kb on - strand at 457.915 kb on - strand at 457.961 kb on + strand at 457.962 kb on - strand at 457.965 kb on + strand at 457.966 kb on - strand at 457.983 kb on + strand at 457.983 kb on + strand at 457.998 kb on + strand at 457.998 kb on + strand at 457.998 kb on + strand at 457.998 kb on + strand at 457.998 kb on + strand at 457.999 kb on - strand at 458.017 kb on + strand at 458.017 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 455,014 + DDA3937_RS02020 0.61 -1.1 455,042 + DDA3937_RS02020 0.62 -1.5 455,056 + DDA3937_RS02020 0.63 -0.7 455,062 + DDA3937_RS02020 0.63 -2.3 455,227 + DDA3937_RS02020 0.70 -0.6 455,228 - DDA3937_RS02020 0.70 -0.5 455,228 - DDA3937_RS02020 0.70 +0.2 455,233 - DDA3937_RS02020 0.70 +0.1 455,236 + DDA3937_RS02020 0.70 -0.8 455,236 + DDA3937_RS02020 0.70 -1.1 455,246 + DDA3937_RS02020 0.70 +0.4 455,347 - DDA3937_RS02020 0.74 -1.2 455,455 - DDA3937_RS02020 0.78 +1.0 455,523 + DDA3937_RS02020 0.81 -0.8 455,982 + -0.3 456,067 - -0.8 456,139 - DDA3937_RS02025 0.15 +0.6 456,485 - DDA3937_RS02025 0.48 -1.8 456,518 + DDA3937_RS02025 0.51 -1.1 456,550 + DDA3937_RS02025 0.54 -0.5 456,602 - DDA3937_RS02025 0.59 -1.3 456,607 - DDA3937_RS02025 0.60 +0.4 456,843 - DDA3937_RS02025 0.82 -2.2 456,887 - DDA3937_RS02025 0.86 -0.8 456,912 - DDA3937_RS02025 0.89 -2.1 456,935 - -0.3 456,964 + -1.9 456,998 - -0.3 457,034 + +0.8 457,034 + +0.3 457,035 - -2.2 457,060 + -0.9 457,065 - -0.2 457,099 + -0.6 457,099 + -1.9 457,117 + -0.4 457,117 + +0.1 457,118 - -0.0 457,139 - -1.3 457,139 - -0.5 457,167 + -0.8 457,167 + +0.5 457,167 + -0.4 457,168 - -0.2 457,168 - -0.3 457,168 - -0.7 457,266 - -0.4 457,336 + -0.3 457,336 + -0.0 457,427 + +0.9 457,428 - +0.5 457,444 - +0.5 457,448 + -1.8 457,448 + +0.6 457,448 + +1.2 457,448 + +0.2 457,448 + +0.1 457,449 - +0.8 457,449 - +0.4 457,452 + -1.1 457,452 + -0.5 457,453 - +0.4 457,454 + -1.1 457,454 + -1.1 457,455 - -0.4 457,460 - +0.4 457,470 + -0.3 457,480 - -0.4 457,480 - -0.4 457,483 + -0.7 457,483 + +0.2 457,483 + -0.7 457,484 - -0.4 457,496 - -0.2 457,532 - +0.2 457,605 + +0.2 457,606 - -0.7 457,656 - -0.3 457,656 - -0.8 457,686 - +0.1 457,686 - -0.0 457,695 + -0.2 457,695 + +0.0 457,734 + +0.0 457,734 + -1.2 457,734 + -1.3 457,735 - +0.8 457,735 - -0.4 457,766 + -0.2 457,766 + -1.9 457,775 + +0.2 457,804 + +0.0 457,804 + +0.2 457,805 - -0.3 457,805 - -0.3 457,805 - -0.1 457,805 - -1.1 457,805 - -0.1 457,806 + +0.0 457,806 + +0.6 457,806 + +0.4 457,806 + -0.9 457,806 + -0.1 457,806 + -0.4 457,806 + -0.0 457,807 - +0.3 457,807 - +0.0 457,807 - +0.0 457,807 - +0.8 457,807 - -0.4 457,817 + -0.8 457,895 + +1.2 457,915 - -0.6 457,915 - +0.5 457,961 + +1.9 457,962 - +0.1 457,965 + -0.1 457,966 - +0.2 457,983 + -0.5 457,983 + +0.4 457,998 + -0.9 457,998 + -0.6 457,998 + -0.9 457,998 + -0.1 457,998 + -0.1 457,999 - -0.1 458,017 + -0.1 458,017 + +0.3
Or see this region's nucleotide sequence