Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS02005 and DDA3937_RS02010 are separated by 363 nucleotides DDA3937_RS02010 and DDA3937_RS02015 are separated by 218 nucleotides DDA3937_RS02015 and DDA3937_RS02020 are separated by 228 nucleotides
DDA3937_RS02005: DDA3937_RS02005 - LPS export ABC transporter permease LptG, at 450,220 to 451,290
_RS02005
DDA3937_RS02010: DDA3937_RS02010 - tRNA-Leu, at 451,654 to 451,738
_RS02010
DDA3937_RS02015: DDA3937_RS02015 - integrase arm-type DNA-binding domain-containing protein, at 451,957 to 453,219
_RS02015
DDA3937_RS02020: DDA3937_RS02020 - DEAD/DEAH box helicase, at 453,448 to 456,006
_RS02020
Position (kb) 451
452
453
454 Strain fitness (log2 ratio) -2
-1
0
1 at 451.338 kb on - strand at 451.465 kb on + strand at 451.529 kb on + strand at 451.530 kb on - strand at 451.581 kb on - strand at 451.646 kb on + strand at 451.763 kb on - strand at 451.892 kb on - strand at 451.943 kb on + strand at 451.943 kb on + strand at 451.944 kb on - strand at 452.008 kb on + strand at 452.009 kb on - strand at 452.033 kb on + strand at 452.033 kb on + strand at 452.033 kb on + strand at 452.033 kb on + strand at 452.033 kb on + strand at 452.034 kb on - strand at 452.034 kb on - strand at 452.034 kb on - strand at 452.034 kb on - strand at 452.034 kb on - strand at 452.035 kb on + strand at 452.035 kb on + strand at 452.035 kb on + strand at 452.036 kb on - strand at 452.036 kb on - strand at 452.066 kb on - strand at 452.066 kb on - strand at 452.080 kb on + strand at 452.081 kb on - strand at 452.081 kb on - strand at 452.161 kb on - strand, within DDA3937_RS02015 at 452.175 kb on + strand, within DDA3937_RS02015 at 452.196 kb on + strand, within DDA3937_RS02015 at 452.196 kb on + strand, within DDA3937_RS02015 at 452.197 kb on - strand, within DDA3937_RS02015 at 452.197 kb on - strand, within DDA3937_RS02015 at 452.197 kb on - strand, within DDA3937_RS02015 at 452.197 kb on - strand, within DDA3937_RS02015 at 452.248 kb on + strand, within DDA3937_RS02015 at 452.248 kb on + strand, within DDA3937_RS02015 at 452.248 kb on + strand, within DDA3937_RS02015 at 452.249 kb on - strand, within DDA3937_RS02015 at 452.250 kb on + strand, within DDA3937_RS02015 at 452.250 kb on + strand, within DDA3937_RS02015 at 452.250 kb on + strand, within DDA3937_RS02015 at 452.250 kb on + strand, within DDA3937_RS02015 at 452.250 kb on + strand, within DDA3937_RS02015 at 452.250 kb on + strand, within DDA3937_RS02015 at 452.250 kb on + strand, within DDA3937_RS02015 at 452.250 kb on + strand, within DDA3937_RS02015 at 452.251 kb on - strand, within DDA3937_RS02015 at 452.251 kb on - strand, within DDA3937_RS02015 at 452.251 kb on - strand, within DDA3937_RS02015 at 452.329 kb on + strand, within DDA3937_RS02015 at 452.371 kb on - strand, within DDA3937_RS02015 at 452.408 kb on + strand, within DDA3937_RS02015 at 452.409 kb on - strand, within DDA3937_RS02015 at 452.441 kb on + strand, within DDA3937_RS02015 at 452.441 kb on + strand, within DDA3937_RS02015 at 452.441 kb on + strand, within DDA3937_RS02015 at 452.475 kb on + strand, within DDA3937_RS02015 at 452.482 kb on + strand, within DDA3937_RS02015 at 452.500 kb on + strand, within DDA3937_RS02015 at 452.500 kb on + strand, within DDA3937_RS02015 at 452.500 kb on + strand, within DDA3937_RS02015 at 452.500 kb on + strand, within DDA3937_RS02015 at 452.501 kb on - strand, within DDA3937_RS02015 at 452.501 kb on - strand, within DDA3937_RS02015 at 452.501 kb on - strand, within DDA3937_RS02015 at 452.501 kb on - strand, within DDA3937_RS02015 at 452.502 kb on + strand, within DDA3937_RS02015 at 452.503 kb on - strand, within DDA3937_RS02015 at 452.503 kb on - strand, within DDA3937_RS02015 at 452.503 kb on - strand, within DDA3937_RS02015 at 452.511 kb on + strand, within DDA3937_RS02015 at 452.563 kb on + strand, within DDA3937_RS02015 at 452.640 kb on + strand, within DDA3937_RS02015 at 452.640 kb on + strand, within DDA3937_RS02015 at 452.640 kb on + strand, within DDA3937_RS02015 at 452.641 kb on - strand, within DDA3937_RS02015 at 452.641 kb on - strand, within DDA3937_RS02015 at 452.672 kb on + strand, within DDA3937_RS02015 at 452.672 kb on + strand, within DDA3937_RS02015 at 452.672 kb on + strand, within DDA3937_RS02015 at 452.672 kb on + strand, within DDA3937_RS02015 at 452.672 kb on + strand, within DDA3937_RS02015 at 452.673 kb on - strand at 452.673 kb on - strand, within DDA3937_RS02015 at 452.728 kb on + strand, within DDA3937_RS02015 at 452.774 kb on - strand, within DDA3937_RS02015 at 452.779 kb on + strand, within DDA3937_RS02015 at 452.863 kb on - strand, within DDA3937_RS02015 at 452.956 kb on + strand, within DDA3937_RS02015 at 453.048 kb on - strand, within DDA3937_RS02015 at 453.059 kb on + strand, within DDA3937_RS02015 at 453.059 kb on + strand, within DDA3937_RS02015 at 453.060 kb on - strand, within DDA3937_RS02015 at 453.095 kb on - strand at 453.112 kb on + strand at 453.154 kb on + strand at 453.178 kb on + strand at 453.178 kb on + strand at 453.179 kb on - strand at 453.217 kb on + strand at 453.252 kb on - strand at 453.350 kb on - strand at 453.642 kb on + strand at 453.668 kb on - strand at 453.704 kb on - strand, within DDA3937_RS02020 at 453.744 kb on - strand, within DDA3937_RS02020 at 453.744 kb on - strand, within DDA3937_RS02020 at 453.744 kb on - strand, within DDA3937_RS02020 at 453.761 kb on - strand, within DDA3937_RS02020 at 453.820 kb on + strand, within DDA3937_RS02020 at 453.918 kb on + strand, within DDA3937_RS02020 at 453.955 kb on - strand, within DDA3937_RS02020 at 453.995 kb on + strand at 454.005 kb on - strand, within DDA3937_RS02020 at 454.077 kb on + strand, within DDA3937_RS02020 at 454.144 kb on - strand, within DDA3937_RS02020
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 451,338 - +0.2 451,465 + -0.3 451,529 + -0.8 451,530 - -0.5 451,581 - -0.9 451,646 + -1.3 451,763 - -1.2 451,892 - +0.2 451,943 + -0.1 451,943 + -1.3 451,944 - +0.8 452,008 + +0.3 452,009 - -0.1 452,033 + -1.0 452,033 + -0.4 452,033 + -1.2 452,033 + +0.0 452,033 + +0.2 452,034 - -1.4 452,034 - +0.2 452,034 - -0.9 452,034 - +0.3 452,034 - -0.3 452,035 + +1.0 452,035 + -0.0 452,035 + +1.4 452,036 - -0.9 452,036 - -0.7 452,066 - -0.1 452,066 - -0.2 452,080 + +0.0 452,081 - -0.1 452,081 - +0.1 452,161 - DDA3937_RS02015 0.16 +0.5 452,175 + DDA3937_RS02015 0.17 -0.2 452,196 + DDA3937_RS02015 0.19 -1.0 452,196 + DDA3937_RS02015 0.19 -0.0 452,197 - DDA3937_RS02015 0.19 -0.9 452,197 - DDA3937_RS02015 0.19 -0.3 452,197 - DDA3937_RS02015 0.19 -0.1 452,197 - DDA3937_RS02015 0.19 -0.9 452,248 + DDA3937_RS02015 0.23 -0.2 452,248 + DDA3937_RS02015 0.23 -0.4 452,248 + DDA3937_RS02015 0.23 -1.6 452,249 - DDA3937_RS02015 0.23 -0.8 452,250 + DDA3937_RS02015 0.23 +0.0 452,250 + DDA3937_RS02015 0.23 -1.0 452,250 + DDA3937_RS02015 0.23 +0.3 452,250 + DDA3937_RS02015 0.23 -0.7 452,250 + DDA3937_RS02015 0.23 -1.6 452,250 + DDA3937_RS02015 0.23 +0.7 452,250 + DDA3937_RS02015 0.23 -0.4 452,250 + DDA3937_RS02015 0.23 +1.2 452,251 - DDA3937_RS02015 0.23 +0.1 452,251 - DDA3937_RS02015 0.23 -0.7 452,251 - DDA3937_RS02015 0.23 -1.1 452,329 + DDA3937_RS02015 0.29 -0.3 452,371 - DDA3937_RS02015 0.33 -0.4 452,408 + DDA3937_RS02015 0.36 -1.5 452,409 - DDA3937_RS02015 0.36 +0.7 452,441 + DDA3937_RS02015 0.38 +0.3 452,441 + DDA3937_RS02015 0.38 -0.3 452,441 + DDA3937_RS02015 0.38 +1.2 452,475 + DDA3937_RS02015 0.41 +1.1 452,482 + DDA3937_RS02015 0.42 +0.2 452,500 + DDA3937_RS02015 0.43 -1.1 452,500 + DDA3937_RS02015 0.43 +0.4 452,500 + DDA3937_RS02015 0.43 -0.3 452,500 + DDA3937_RS02015 0.43 -0.0 452,501 - DDA3937_RS02015 0.43 +0.2 452,501 - DDA3937_RS02015 0.43 +0.4 452,501 - DDA3937_RS02015 0.43 -0.6 452,501 - DDA3937_RS02015 0.43 -1.1 452,502 + DDA3937_RS02015 0.43 +0.7 452,503 - DDA3937_RS02015 0.43 -0.6 452,503 - DDA3937_RS02015 0.43 +0.2 452,503 - DDA3937_RS02015 0.43 -0.1 452,511 + DDA3937_RS02015 0.44 -0.4 452,563 + DDA3937_RS02015 0.48 +0.8 452,640 + DDA3937_RS02015 0.54 -0.6 452,640 + DDA3937_RS02015 0.54 -0.1 452,640 + DDA3937_RS02015 0.54 -0.5 452,641 - DDA3937_RS02015 0.54 +0.8 452,641 - DDA3937_RS02015 0.54 -0.6 452,672 + DDA3937_RS02015 0.57 -0.6 452,672 + DDA3937_RS02015 0.57 -0.9 452,672 + DDA3937_RS02015 0.57 -0.6 452,672 + DDA3937_RS02015 0.57 -0.8 452,672 + DDA3937_RS02015 0.57 -0.3 452,673 - +1.2 452,673 - DDA3937_RS02015 0.57 -1.8 452,728 + DDA3937_RS02015 0.61 -1.0 452,774 - DDA3937_RS02015 0.65 +0.2 452,779 + DDA3937_RS02015 0.65 -0.9 452,863 - DDA3937_RS02015 0.72 -0.2 452,956 + DDA3937_RS02015 0.79 -2.2 453,048 - DDA3937_RS02015 0.86 -0.8 453,059 + DDA3937_RS02015 0.87 -0.1 453,059 + DDA3937_RS02015 0.87 -0.3 453,060 - DDA3937_RS02015 0.87 -0.5 453,095 - -1.1 453,112 + -0.3 453,154 + -1.9 453,178 + -0.7 453,178 + -0.3 453,179 - +0.7 453,217 + -1.4 453,252 - -0.1 453,350 - -1.1 453,642 + +0.7 453,668 - -0.2 453,704 - DDA3937_RS02020 0.10 +0.6 453,744 - DDA3937_RS02020 0.12 +1.2 453,744 - DDA3937_RS02020 0.12 -0.2 453,744 - DDA3937_RS02020 0.12 -0.7 453,761 - DDA3937_RS02020 0.12 -0.5 453,820 + DDA3937_RS02020 0.15 +0.2 453,918 + DDA3937_RS02020 0.18 -1.9 453,955 - DDA3937_RS02020 0.20 -0.8 453,995 + +1.2 454,005 - DDA3937_RS02020 0.22 +1.1 454,077 + DDA3937_RS02020 0.25 -0.1 454,144 - DDA3937_RS02020 0.27 -2.2
Or see this region's nucleotide sequence