Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS01950 and DDA3937_RS01955 are separated by 325 nucleotides DDA3937_RS01955 and DDA3937_RS01960 are separated by 39 nucleotides DDA3937_RS01960 and DDA3937_RS01965 are separated by 283 nucleotides
DDA3937_RS01950: DDA3937_RS01950 - GNAT family N-acetyltransferase, at 437,238 to 437,741
_RS01950
DDA3937_RS01955: DDA3937_RS01955 - helix-turn-helix domain-containing protein, at 438,067 to 438,654
_RS01955
DDA3937_RS01960: DDA3937_RS01960 - GNAT family N-acetyltransferase, at 438,694 to 439,176
_RS01960
DDA3937_RS01965: DDA3937_RS01965 - alpha/beta fold hydrolase, at 439,460 to 440,527
_RS01965
Position (kb) 438
439
440 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 437.812 kb on + strand at 437.812 kb on + strand at 437.812 kb on + strand at 437.812 kb on + strand at 437.812 kb on + strand at 437.812 kb on + strand at 437.813 kb on - strand at 437.813 kb on - strand at 437.813 kb on - strand at 437.813 kb on - strand at 437.813 kb on - strand at 437.816 kb on + strand at 437.816 kb on + strand at 437.817 kb on - strand at 437.817 kb on - strand at 437.817 kb on - strand at 437.817 kb on - strand at 437.828 kb on + strand at 437.828 kb on + strand at 437.828 kb on + strand at 437.829 kb on - strand at 437.829 kb on - strand at 437.829 kb on - strand at 437.832 kb on + strand at 437.832 kb on + strand at 437.833 kb on - strand at 437.833 kb on - strand at 437.833 kb on - strand at 437.833 kb on - strand at 437.833 kb on - strand at 437.843 kb on - strand at 437.843 kb on - strand at 437.844 kb on + strand at 437.844 kb on + strand at 437.844 kb on + strand at 437.844 kb on + strand at 437.844 kb on + strand at 437.844 kb on + strand at 437.844 kb on + strand at 437.844 kb on + strand at 437.844 kb on + strand at 437.844 kb on + strand at 437.844 kb on + strand at 437.844 kb on + strand at 437.845 kb on - strand at 437.845 kb on - strand at 437.845 kb on - strand at 437.845 kb on - strand at 437.845 kb on - strand at 437.845 kb on - strand at 437.845 kb on - strand at 437.845 kb on - strand at 437.848 kb on + strand at 437.848 kb on + strand at 437.881 kb on + strand at 438.079 kb on - strand at 438.271 kb on + strand, within DDA3937_RS01955 at 438.271 kb on + strand, within DDA3937_RS01955 at 438.279 kb on + strand, within DDA3937_RS01955 at 438.279 kb on + strand, within DDA3937_RS01955 at 438.280 kb on - strand, within DDA3937_RS01955 at 438.280 kb on - strand, within DDA3937_RS01955 at 438.280 kb on - strand, within DDA3937_RS01955 at 438.280 kb on - strand, within DDA3937_RS01955 at 438.388 kb on - strand, within DDA3937_RS01955 at 438.388 kb on - strand, within DDA3937_RS01955 at 438.499 kb on + strand, within DDA3937_RS01955 at 438.499 kb on + strand, within DDA3937_RS01955 at 438.499 kb on + strand, within DDA3937_RS01955 at 438.499 kb on + strand, within DDA3937_RS01955 at 438.499 kb on + strand, within DDA3937_RS01955 at 438.500 kb on - strand, within DDA3937_RS01955 at 438.500 kb on - strand, within DDA3937_RS01955 at 438.500 kb on - strand, within DDA3937_RS01955 at 438.500 kb on - strand, within DDA3937_RS01955 at 438.500 kb on - strand, within DDA3937_RS01955 at 438.500 kb on - strand, within DDA3937_RS01955 at 438.500 kb on - strand, within DDA3937_RS01955 at 438.584 kb on - strand, within DDA3937_RS01955 at 438.603 kb on + strand at 438.628 kb on + strand at 438.639 kb on + strand at 438.640 kb on - strand at 438.799 kb on - strand, within DDA3937_RS01960 at 438.834 kb on - strand, within DDA3937_RS01960 at 438.843 kb on - strand, within DDA3937_RS01960 at 438.843 kb on - strand, within DDA3937_RS01960 at 439.096 kb on - strand, within DDA3937_RS01960 at 439.133 kb on - strand at 439.134 kb on + strand at 439.134 kb on + strand at 439.134 kb on + strand at 439.134 kb on + strand at 439.135 kb on - strand at 439.174 kb on + strand at 439.174 kb on + strand at 439.178 kb on + strand at 439.192 kb on - strand at 439.210 kb on + strand at 439.210 kb on + strand at 439.211 kb on - strand at 439.309 kb on + strand at 439.310 kb on - strand at 439.310 kb on - strand at 439.323 kb on - strand at 439.323 kb on - strand at 439.327 kb on + strand at 439.327 kb on + strand at 439.328 kb on - strand at 439.329 kb on + strand at 439.330 kb on - strand at 439.358 kb on - strand at 439.359 kb on + strand at 439.405 kb on + strand at 439.406 kb on - strand at 439.418 kb on - strand at 439.437 kb on + strand at 439.443 kb on + strand at 439.443 kb on + strand at 439.443 kb on + strand at 439.459 kb on + strand at 439.460 kb on - strand at 439.460 kb on - strand at 439.539 kb on + strand at 439.540 kb on - strand at 439.540 kb on - strand at 439.612 kb on + strand, within DDA3937_RS01965 at 439.620 kb on - strand, within DDA3937_RS01965 at 439.620 kb on - strand, within DDA3937_RS01965 at 439.622 kb on + strand, within DDA3937_RS01965 at 439.623 kb on - strand, within DDA3937_RS01965 at 439.640 kb on - strand at 439.640 kb on - strand, within DDA3937_RS01965 at 439.640 kb on - strand, within DDA3937_RS01965 at 439.653 kb on + strand, within DDA3937_RS01965 at 439.672 kb on + strand, within DDA3937_RS01965 at 439.692 kb on + strand, within DDA3937_RS01965 at 439.693 kb on - strand, within DDA3937_RS01965 at 439.719 kb on + strand, within DDA3937_RS01965 at 439.720 kb on - strand, within DDA3937_RS01965 at 439.765 kb on + strand, within DDA3937_RS01965 at 439.765 kb on + strand, within DDA3937_RS01965 at 439.766 kb on - strand, within DDA3937_RS01965 at 439.822 kb on + strand, within DDA3937_RS01965 at 439.835 kb on + strand, within DDA3937_RS01965 at 439.835 kb on + strand, within DDA3937_RS01965 at 439.836 kb on - strand, within DDA3937_RS01965 at 439.836 kb on - strand, within DDA3937_RS01965 at 439.836 kb on - strand, within DDA3937_RS01965 at 439.836 kb on - strand, within DDA3937_RS01965 at 439.836 kb on - strand, within DDA3937_RS01965 at 439.837 kb on + strand, within DDA3937_RS01965 at 439.837 kb on + strand, within DDA3937_RS01965 at 439.837 kb on + strand, within DDA3937_RS01965 at 439.837 kb on + strand, within DDA3937_RS01965 at 439.837 kb on + strand, within DDA3937_RS01965 at 439.837 kb on + strand, within DDA3937_RS01965 at 439.837 kb on + strand, within DDA3937_RS01965 at 439.837 kb on + strand, within DDA3937_RS01965 at 439.838 kb on - strand, within DDA3937_RS01965 at 439.838 kb on - strand, within DDA3937_RS01965 at 439.838 kb on - strand, within DDA3937_RS01965 at 439.841 kb on + strand, within DDA3937_RS01965 at 439.841 kb on + strand, within DDA3937_RS01965 at 439.841 kb on + strand, within DDA3937_RS01965 at 439.842 kb on - strand, within DDA3937_RS01965 at 439.842 kb on - strand, within DDA3937_RS01965 at 439.842 kb on - strand, within DDA3937_RS01965 at 439.842 kb on - strand, within DDA3937_RS01965 at 439.894 kb on + strand, within DDA3937_RS01965 at 439.895 kb on - strand, within DDA3937_RS01965 at 439.939 kb on + strand, within DDA3937_RS01965 at 439.939 kb on + strand, within DDA3937_RS01965 at 439.940 kb on - strand, within DDA3937_RS01965 at 439.940 kb on - strand, within DDA3937_RS01965 at 439.940 kb on - strand, within DDA3937_RS01965 at 440.090 kb on + strand, within DDA3937_RS01965 at 440.090 kb on + strand, within DDA3937_RS01965 at 440.091 kb on - strand, within DDA3937_RS01965 at 440.091 kb on - strand, within DDA3937_RS01965 at 440.091 kb on - strand, within DDA3937_RS01965 at 440.134 kb on + strand, within DDA3937_RS01965 at 440.134 kb on + strand, within DDA3937_RS01965 at 440.135 kb on - strand at 440.135 kb on - strand, within DDA3937_RS01965 at 440.156 kb on - strand, within DDA3937_RS01965 at 440.166 kb on - strand, within DDA3937_RS01965
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 437,812 + +0.6 437,812 + -0.8 437,812 + -0.1 437,812 + +0.2 437,812 + -1.9 437,812 + +0.2 437,813 - -0.2 437,813 - +0.7 437,813 - -0.1 437,813 - -0.5 437,813 - -1.1 437,816 + -0.4 437,816 + -0.2 437,817 - +1.2 437,817 - -1.0 437,817 - +0.1 437,817 - +0.7 437,828 + +0.1 437,828 + +0.1 437,828 + -0.8 437,829 - -0.2 437,829 - -1.4 437,829 - -0.5 437,832 + -0.0 437,832 + -0.6 437,833 - -0.3 437,833 - -1.3 437,833 - -1.5 437,833 - -1.3 437,833 - -0.7 437,843 - -1.5 437,843 - -0.6 437,844 + -0.5 437,844 + +1.2 437,844 + -1.3 437,844 + -0.8 437,844 + +0.1 437,844 + -0.6 437,844 + -1.0 437,844 + -2.3 437,844 + +0.4 437,844 + -0.2 437,844 + -0.3 437,844 + -1.1 437,845 - +1.5 437,845 - -0.2 437,845 - +0.4 437,845 - -0.5 437,845 - +0.5 437,845 - -1.8 437,845 - +0.2 437,845 - +0.2 437,848 + +0.2 437,848 + -0.6 437,881 + +0.7 438,079 - +0.0 438,271 + DDA3937_RS01955 0.35 +2.6 438,271 + DDA3937_RS01955 0.35 +0.4 438,279 + DDA3937_RS01955 0.36 +0.5 438,279 + DDA3937_RS01955 0.36 -0.2 438,280 - DDA3937_RS01955 0.36 -0.6 438,280 - DDA3937_RS01955 0.36 +0.1 438,280 - DDA3937_RS01955 0.36 +0.2 438,280 - DDA3937_RS01955 0.36 -0.4 438,388 - DDA3937_RS01955 0.55 -0.8 438,388 - DDA3937_RS01955 0.55 +0.1 438,499 + DDA3937_RS01955 0.73 +0.0 438,499 + DDA3937_RS01955 0.73 -1.0 438,499 + DDA3937_RS01955 0.73 +0.8 438,499 + DDA3937_RS01955 0.73 +0.2 438,499 + DDA3937_RS01955 0.73 +0.3 438,500 - DDA3937_RS01955 0.74 -0.5 438,500 - DDA3937_RS01955 0.74 -0.5 438,500 - DDA3937_RS01955 0.74 -0.2 438,500 - DDA3937_RS01955 0.74 -1.2 438,500 - DDA3937_RS01955 0.74 +1.2 438,500 - DDA3937_RS01955 0.74 -1.4 438,500 - DDA3937_RS01955 0.74 +0.8 438,584 - DDA3937_RS01955 0.88 -0.2 438,603 + +0.2 438,628 + +1.4 438,639 + -0.2 438,640 - +1.2 438,799 - DDA3937_RS01960 0.22 -2.4 438,834 - DDA3937_RS01960 0.29 +0.7 438,843 - DDA3937_RS01960 0.31 -0.7 438,843 - DDA3937_RS01960 0.31 -0.6 439,096 - DDA3937_RS01960 0.83 -0.3 439,133 - -1.4 439,134 + +0.1 439,134 + -0.6 439,134 + +0.1 439,134 + -0.6 439,135 - -3.2 439,174 + +1.4 439,174 + +0.3 439,178 + +0.4 439,192 - -0.9 439,210 + -0.1 439,210 + -0.8 439,211 - +1.2 439,309 + -1.2 439,310 - -0.6 439,310 - -0.6 439,323 - -1.0 439,323 - +0.2 439,327 + +0.2 439,327 + -1.0 439,328 - -0.5 439,329 + -0.5 439,330 - -0.2 439,358 - +1.3 439,359 + +0.2 439,405 + -0.8 439,406 - -0.3 439,418 - -0.8 439,437 + -0.1 439,443 + -0.3 439,443 + -0.1 439,443 + -0.5 439,459 + -0.9 439,460 - -0.1 439,460 - -1.2 439,539 + -0.3 439,540 - -0.2 439,540 - -0.3 439,612 + DDA3937_RS01965 0.14 -0.3 439,620 - DDA3937_RS01965 0.15 -0.7 439,620 - DDA3937_RS01965 0.15 +0.4 439,622 + DDA3937_RS01965 0.15 -1.3 439,623 - DDA3937_RS01965 0.15 -0.1 439,640 - -0.3 439,640 - DDA3937_RS01965 0.17 -1.3 439,640 - DDA3937_RS01965 0.17 -0.0 439,653 + DDA3937_RS01965 0.18 +0.4 439,672 + DDA3937_RS01965 0.20 -0.2 439,692 + DDA3937_RS01965 0.22 +0.5 439,693 - DDA3937_RS01965 0.22 +0.9 439,719 + DDA3937_RS01965 0.24 -0.8 439,720 - DDA3937_RS01965 0.24 -0.2 439,765 + DDA3937_RS01965 0.29 -1.2 439,765 + DDA3937_RS01965 0.29 -0.6 439,766 - DDA3937_RS01965 0.29 +2.0 439,822 + DDA3937_RS01965 0.34 +0.2 439,835 + DDA3937_RS01965 0.35 +0.2 439,835 + DDA3937_RS01965 0.35 +0.7 439,836 - DDA3937_RS01965 0.35 +0.8 439,836 - DDA3937_RS01965 0.35 -1.1 439,836 - DDA3937_RS01965 0.35 +1.2 439,836 - DDA3937_RS01965 0.35 -0.4 439,836 - DDA3937_RS01965 0.35 -0.8 439,837 + DDA3937_RS01965 0.35 +1.8 439,837 + DDA3937_RS01965 0.35 -0.4 439,837 + DDA3937_RS01965 0.35 +0.2 439,837 + DDA3937_RS01965 0.35 -2.7 439,837 + DDA3937_RS01965 0.35 -0.6 439,837 + DDA3937_RS01965 0.35 +1.2 439,837 + DDA3937_RS01965 0.35 -1.1 439,837 + DDA3937_RS01965 0.35 +1.2 439,838 - DDA3937_RS01965 0.35 -2.2 439,838 - DDA3937_RS01965 0.35 +0.2 439,838 - DDA3937_RS01965 0.35 -0.6 439,841 + DDA3937_RS01965 0.36 -0.1 439,841 + DDA3937_RS01965 0.36 -0.4 439,841 + DDA3937_RS01965 0.36 +0.1 439,842 - DDA3937_RS01965 0.36 -0.7 439,842 - DDA3937_RS01965 0.36 -0.7 439,842 - DDA3937_RS01965 0.36 -1.2 439,842 - DDA3937_RS01965 0.36 +0.3 439,894 + DDA3937_RS01965 0.41 -0.6 439,895 - DDA3937_RS01965 0.41 -0.1 439,939 + DDA3937_RS01965 0.45 +1.2 439,939 + DDA3937_RS01965 0.45 -0.3 439,940 - DDA3937_RS01965 0.45 -1.1 439,940 - DDA3937_RS01965 0.45 -0.9 439,940 - DDA3937_RS01965 0.45 -0.3 440,090 + DDA3937_RS01965 0.59 -0.4 440,090 + DDA3937_RS01965 0.59 +0.5 440,091 - DDA3937_RS01965 0.59 -0.8 440,091 - DDA3937_RS01965 0.59 -0.3 440,091 - DDA3937_RS01965 0.59 -0.5 440,134 + DDA3937_RS01965 0.63 +0.6 440,134 + DDA3937_RS01965 0.63 +1.1 440,135 - +0.2 440,135 - DDA3937_RS01965 0.63 -0.8 440,156 - DDA3937_RS01965 0.65 +0.8 440,166 - DDA3937_RS01965 0.66 +0.4
Or see this region's nucleotide sequence