Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS01935

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS01930 and DDA3937_RS01935 are separated by 220 nucleotidesDDA3937_RS01935 and DDA3937_RS01940 are separated by 94 nucleotides DDA3937_RS01930: DDA3937_RS01930 - YhcH/YjgK/YiaL family protein, at 433,337 to 433,804 _RS01930 DDA3937_RS01935: DDA3937_RS01935 - 6-phospho-beta-glucosidase, at 434,025 to 435,461 _RS01935 DDA3937_RS01940: DDA3937_RS01940 - ornithine carbamoyltransferase, at 435,556 to 436,572 _RS01940 Position (kb) 434 435 436Strain fitness (log2 ratio) -3 -2 -1 0 1at 433.103 kb on + strandat 433.104 kb on - strandat 433.104 kb on - strandat 433.137 kb on + strandat 433.288 kb on + strandat 433.288 kb on + strandat 433.324 kb on + strandat 433.376 kb on + strandat 433.377 kb on - strandat 433.409 kb on + strand, within DDA3937_RS01930at 433.409 kb on + strand, within DDA3937_RS01930at 433.409 kb on + strand, within DDA3937_RS01930at 433.409 kb on + strand, within DDA3937_RS01930at 433.409 kb on + strand, within DDA3937_RS01930at 433.410 kb on - strand, within DDA3937_RS01930at 433.410 kb on - strand, within DDA3937_RS01930at 433.410 kb on - strand, within DDA3937_RS01930at 433.410 kb on - strand, within DDA3937_RS01930at 433.423 kb on + strand, within DDA3937_RS01930at 433.423 kb on + strand, within DDA3937_RS01930at 433.423 kb on + strand, within DDA3937_RS01930at 433.423 kb on + strand, within DDA3937_RS01930at 433.424 kb on - strand, within DDA3937_RS01930at 433.424 kb on - strand, within DDA3937_RS01930at 433.424 kb on - strand, within DDA3937_RS01930at 433.424 kb on - strand, within DDA3937_RS01930at 433.424 kb on - strand, within DDA3937_RS01930at 433.424 kb on - strand, within DDA3937_RS01930at 433.426 kb on + strand, within DDA3937_RS01930at 433.468 kb on + strand, within DDA3937_RS01930at 433.469 kb on - strand, within DDA3937_RS01930at 433.529 kb on + strand, within DDA3937_RS01930at 433.529 kb on + strand, within DDA3937_RS01930at 433.541 kb on + strand, within DDA3937_RS01930at 433.542 kb on - strand, within DDA3937_RS01930at 433.542 kb on - strand, within DDA3937_RS01930at 433.607 kb on - strand, within DDA3937_RS01930at 433.761 kb on + strandat 433.761 kb on + strandat 433.761 kb on + strandat 433.761 kb on + strandat 433.761 kb on + strandat 433.762 kb on - strandat 433.762 kb on - strandat 433.762 kb on - strandat 433.762 kb on - strandat 433.762 kb on - strandat 433.762 kb on - strandat 433.762 kb on - strandat 433.789 kb on + strandat 433.789 kb on + strandat 433.910 kb on - strandat 433.910 kb on - strandat 433.933 kb on + strandat 433.933 kb on + strandat 433.933 kb on + strandat 433.975 kb on + strandat 433.976 kb on - strandat 433.976 kb on - strandat 434.024 kb on + strandat 434.024 kb on + strandat 434.065 kb on + strandat 434.193 kb on + strand, within DDA3937_RS01935at 434.220 kb on + strand, within DDA3937_RS01935at 434.220 kb on + strand, within DDA3937_RS01935at 434.221 kb on - strand, within DDA3937_RS01935at 434.231 kb on + strand, within DDA3937_RS01935at 434.231 kb on + strand, within DDA3937_RS01935at 434.231 kb on + strand, within DDA3937_RS01935at 434.231 kb on + strand, within DDA3937_RS01935at 434.232 kb on - strand, within DDA3937_RS01935at 434.232 kb on - strand, within DDA3937_RS01935at 434.232 kb on - strand, within DDA3937_RS01935at 434.232 kb on - strand, within DDA3937_RS01935at 434.232 kb on - strand, within DDA3937_RS01935at 434.446 kb on - strand, within DDA3937_RS01935at 434.446 kb on - strand, within DDA3937_RS01935at 434.533 kb on - strand, within DDA3937_RS01935at 434.555 kb on + strand, within DDA3937_RS01935at 434.555 kb on + strand, within DDA3937_RS01935at 434.556 kb on - strand, within DDA3937_RS01935at 434.646 kb on + strand, within DDA3937_RS01935at 434.646 kb on + strand, within DDA3937_RS01935at 434.646 kb on + strand, within DDA3937_RS01935at 434.646 kb on + strand, within DDA3937_RS01935at 434.646 kb on + strand, within DDA3937_RS01935at 434.646 kb on + strand, within DDA3937_RS01935at 434.646 kb on + strand, within DDA3937_RS01935at 434.647 kb on - strand, within DDA3937_RS01935at 434.647 kb on - strand, within DDA3937_RS01935at 434.647 kb on - strand, within DDA3937_RS01935at 434.752 kb on - strand, within DDA3937_RS01935at 434.752 kb on - strand, within DDA3937_RS01935at 434.752 kb on - strand, within DDA3937_RS01935at 434.754 kb on + strand, within DDA3937_RS01935at 434.754 kb on + strand, within DDA3937_RS01935at 434.755 kb on - strand, within DDA3937_RS01935at 434.755 kb on - strand, within DDA3937_RS01935at 434.818 kb on - strand, within DDA3937_RS01935at 434.818 kb on - strand, within DDA3937_RS01935at 434.818 kb on - strand, within DDA3937_RS01935at 434.818 kb on - strand, within DDA3937_RS01935at 434.823 kb on - strand, within DDA3937_RS01935at 434.857 kb on - strand, within DDA3937_RS01935at 434.943 kb on + strand, within DDA3937_RS01935at 434.944 kb on - strand, within DDA3937_RS01935at 434.944 kb on - strand, within DDA3937_RS01935at 434.944 kb on - strand, within DDA3937_RS01935at 434.954 kb on + strand, within DDA3937_RS01935at 434.958 kb on + strand, within DDA3937_RS01935at 434.958 kb on + strand, within DDA3937_RS01935at 434.958 kb on + strand, within DDA3937_RS01935at 434.958 kb on + strand, within DDA3937_RS01935at 434.958 kb on + strand, within DDA3937_RS01935at 434.959 kb on - strand, within DDA3937_RS01935at 434.959 kb on - strand, within DDA3937_RS01935at 434.959 kb on - strand, within DDA3937_RS01935at 434.959 kb on - strand, within DDA3937_RS01935at 434.959 kb on - strand, within DDA3937_RS01935at 434.959 kb on - strand, within DDA3937_RS01935at 434.959 kb on - strand, within DDA3937_RS01935at 434.961 kb on + strand, within DDA3937_RS01935at 434.961 kb on + strand, within DDA3937_RS01935at 434.961 kb on + strand, within DDA3937_RS01935at 434.961 kb on + strand, within DDA3937_RS01935at 434.961 kb on + strand, within DDA3937_RS01935at 434.961 kb on + strand, within DDA3937_RS01935at 434.961 kb on + strand, within DDA3937_RS01935at 434.961 kb on + strand, within DDA3937_RS01935at 434.962 kb on - strandat 434.962 kb on - strand, within DDA3937_RS01935at 434.962 kb on - strand, within DDA3937_RS01935at 434.962 kb on - strand, within DDA3937_RS01935at 434.962 kb on - strand, within DDA3937_RS01935at 434.962 kb on - strand, within DDA3937_RS01935at 434.962 kb on - strand, within DDA3937_RS01935at 434.962 kb on - strand, within DDA3937_RS01935at 434.962 kb on - strand, within DDA3937_RS01935at 434.962 kb on - strand, within DDA3937_RS01935at 434.962 kb on - strand, within DDA3937_RS01935at 434.962 kb on - strand, within DDA3937_RS01935at 434.962 kb on - strandat 435.042 kb on - strand, within DDA3937_RS01935at 435.117 kb on + strand, within DDA3937_RS01935at 435.117 kb on + strand, within DDA3937_RS01935at 435.117 kb on + strand, within DDA3937_RS01935at 435.117 kb on + strand, within DDA3937_RS01935at 435.117 kb on + strand, within DDA3937_RS01935at 435.118 kb on - strand, within DDA3937_RS01935at 435.118 kb on - strand, within DDA3937_RS01935at 435.118 kb on - strand, within DDA3937_RS01935at 435.118 kb on - strand, within DDA3937_RS01935at 435.118 kb on - strand, within DDA3937_RS01935at 435.118 kb on - strand, within DDA3937_RS01935at 435.118 kb on - strand, within DDA3937_RS01935at 435.118 kb on - strand, within DDA3937_RS01935at 435.118 kb on - strand, within DDA3937_RS01935at 435.118 kb on - strand, within DDA3937_RS01935at 435.144 kb on - strand, within DDA3937_RS01935at 435.173 kb on + strand, within DDA3937_RS01935at 435.173 kb on + strand, within DDA3937_RS01935at 435.174 kb on - strand, within DDA3937_RS01935at 435.174 kb on - strand, within DDA3937_RS01935at 435.174 kb on - strand, within DDA3937_RS01935at 435.233 kb on + strand, within DDA3937_RS01935at 435.285 kb on + strand, within DDA3937_RS01935at 435.459 kb on + strandat 435.459 kb on + strandat 435.460 kb on - strandat 435.460 kb on - strandat 435.460 kb on - strandat 435.460 kb on - strandat 435.557 kb on + strandat 435.844 kb on + strand, within DDA3937_RS01940at 435.845 kb on - strand, within DDA3937_RS01940at 435.883 kb on - strand, within DDA3937_RS01940at 435.884 kb on + strand, within DDA3937_RS01940at 435.884 kb on + strand, within DDA3937_RS01940at 435.884 kb on + strand, within DDA3937_RS01940at 435.884 kb on + strand, within DDA3937_RS01940at 435.884 kb on + strand, within DDA3937_RS01940at 435.884 kb on + strand, within DDA3937_RS01940at 435.885 kb on - strand, within DDA3937_RS01940at 435.885 kb on - strand, within DDA3937_RS01940at 435.885 kb on - strand, within DDA3937_RS01940at 435.885 kb on - strand, within DDA3937_RS01940at 435.885 kb on - strand, within DDA3937_RS01940at 435.895 kb on + strand, within DDA3937_RS01940at 435.896 kb on - strand, within DDA3937_RS01940at 436.056 kb on + strand, within DDA3937_RS01940at 436.056 kb on + strand, within DDA3937_RS01940at 436.057 kb on - strand, within DDA3937_RS01940at 436.057 kb on - strand, within DDA3937_RS01940at 436.068 kb on + strand, within DDA3937_RS01940at 436.091 kb on + strand, within DDA3937_RS01940at 436.271 kb on + strand, within DDA3937_RS01940at 436.271 kb on + strand, within DDA3937_RS01940at 436.272 kb on - strand, within DDA3937_RS01940at 436.346 kb on + strand, within DDA3937_RS01940at 436.347 kb on - strand, within DDA3937_RS01940at 436.371 kb on - strand, within DDA3937_RS01940at 436.371 kb on - strand, within DDA3937_RS01940

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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433,103 + -0.3
433,104 - -1.6
433,104 - -0.2
433,137 + -1.0
433,288 + +0.2
433,288 + -1.3
433,324 + +0.1
433,376 + +0.1
433,377 - -1.3
433,409 + DDA3937_RS01930 0.15 +0.0
433,409 + DDA3937_RS01930 0.15 -0.1
433,409 + DDA3937_RS01930 0.15 -0.8
433,409 + DDA3937_RS01930 0.15 -0.9
433,409 + DDA3937_RS01930 0.15 +0.1
433,410 - DDA3937_RS01930 0.16 +0.7
433,410 - DDA3937_RS01930 0.16 +0.9
433,410 - DDA3937_RS01930 0.16 +1.1
433,410 - DDA3937_RS01930 0.16 +1.5
433,423 + DDA3937_RS01930 0.18 -0.5
433,423 + DDA3937_RS01930 0.18 -0.8
433,423 + DDA3937_RS01930 0.18 -0.5
433,423 + DDA3937_RS01930 0.18 -0.3
433,424 - DDA3937_RS01930 0.19 -1.8
433,424 - DDA3937_RS01930 0.19 -0.4
433,424 - DDA3937_RS01930 0.19 +0.0
433,424 - DDA3937_RS01930 0.19 -2.6
433,424 - DDA3937_RS01930 0.19 -0.9
433,424 - DDA3937_RS01930 0.19 +0.2
433,426 + DDA3937_RS01930 0.19 -0.8
433,468 + DDA3937_RS01930 0.28 -1.5
433,469 - DDA3937_RS01930 0.28 -1.3
433,529 + DDA3937_RS01930 0.41 -0.3
433,529 + DDA3937_RS01930 0.41 +0.3
433,541 + DDA3937_RS01930 0.44 -2.5
433,542 - DDA3937_RS01930 0.44 -0.6
433,542 - DDA3937_RS01930 0.44 -0.3
433,607 - DDA3937_RS01930 0.58 +1.2
433,761 + +1.2
433,761 + -0.1
433,761 + -1.1
433,761 + -0.3
433,761 + -0.0
433,762 - +0.6
433,762 - -0.2
433,762 - -1.7
433,762 - -0.1
433,762 - +0.4
433,762 - -1.3
433,762 - +0.2
433,789 + -0.2
433,789 + -0.5
433,910 - -0.5
433,910 - -0.1
433,933 + +0.0
433,933 + -0.5
433,933 + +1.0
433,975 + -0.8
433,976 - -0.3
433,976 - -0.4
434,024 + +0.2
434,024 + -0.1
434,065 + +0.9
434,193 + DDA3937_RS01935 0.12 -0.6
434,220 + DDA3937_RS01935 0.14 +0.7
434,220 + DDA3937_RS01935 0.14 -2.0
434,221 - DDA3937_RS01935 0.14 -0.0
434,231 + DDA3937_RS01935 0.14 -0.0
434,231 + DDA3937_RS01935 0.14 -1.3
434,231 + DDA3937_RS01935 0.14 -0.3
434,231 + DDA3937_RS01935 0.14 +0.1
434,232 - DDA3937_RS01935 0.14 -1.6
434,232 - DDA3937_RS01935 0.14 -0.0
434,232 - DDA3937_RS01935 0.14 -1.4
434,232 - DDA3937_RS01935 0.14 -0.5
434,232 - DDA3937_RS01935 0.14 -0.1
434,446 - DDA3937_RS01935 0.29 +0.0
434,446 - DDA3937_RS01935 0.29 -0.6
434,533 - DDA3937_RS01935 0.35 +0.1
434,555 + DDA3937_RS01935 0.37 +1.1
434,555 + DDA3937_RS01935 0.37 -0.6
434,556 - DDA3937_RS01935 0.37 -0.7
434,646 + DDA3937_RS01935 0.43 +0.0
434,646 + DDA3937_RS01935 0.43 -0.8
434,646 + DDA3937_RS01935 0.43 +0.5
434,646 + DDA3937_RS01935 0.43 -0.6
434,646 + DDA3937_RS01935 0.43 -0.4
434,646 + DDA3937_RS01935 0.43 +0.8
434,646 + DDA3937_RS01935 0.43 -1.2
434,647 - DDA3937_RS01935 0.43 -1.9
434,647 - DDA3937_RS01935 0.43 -1.2
434,647 - DDA3937_RS01935 0.43 -1.8
434,752 - DDA3937_RS01935 0.51 -0.0
434,752 - DDA3937_RS01935 0.51 +0.1
434,752 - DDA3937_RS01935 0.51 -0.3
434,754 + DDA3937_RS01935 0.51 -0.0
434,754 + DDA3937_RS01935 0.51 -0.3
434,755 - DDA3937_RS01935 0.51 -0.6
434,755 - DDA3937_RS01935 0.51 -0.3
434,818 - DDA3937_RS01935 0.55 -0.9
434,818 - DDA3937_RS01935 0.55 -0.2
434,818 - DDA3937_RS01935 0.55 -0.3
434,818 - DDA3937_RS01935 0.55 -0.6
434,823 - DDA3937_RS01935 0.56 +0.0
434,857 - DDA3937_RS01935 0.58 +0.0
434,943 + DDA3937_RS01935 0.64 -0.2
434,944 - DDA3937_RS01935 0.64 +0.2
434,944 - DDA3937_RS01935 0.64 +0.2
434,944 - DDA3937_RS01935 0.64 -1.3
434,954 + DDA3937_RS01935 0.65 -0.7
434,958 + DDA3937_RS01935 0.65 -2.4
434,958 + DDA3937_RS01935 0.65 +0.4
434,958 + DDA3937_RS01935 0.65 +0.2
434,958 + DDA3937_RS01935 0.65 -0.2
434,958 + DDA3937_RS01935 0.65 +0.8
434,959 - DDA3937_RS01935 0.65 -0.7
434,959 - DDA3937_RS01935 0.65 +0.0
434,959 - DDA3937_RS01935 0.65 +0.6
434,959 - DDA3937_RS01935 0.65 -1.0
434,959 - DDA3937_RS01935 0.65 -2.8
434,959 - DDA3937_RS01935 0.65 +0.5
434,959 - DDA3937_RS01935 0.65 -0.2
434,961 + DDA3937_RS01935 0.65 -0.5
434,961 + DDA3937_RS01935 0.65 +1.2
434,961 + DDA3937_RS01935 0.65 -0.0
434,961 + DDA3937_RS01935 0.65 -0.3
434,961 + DDA3937_RS01935 0.65 -0.4
434,961 + DDA3937_RS01935 0.65 +0.7
434,961 + DDA3937_RS01935 0.65 -1.1
434,961 + DDA3937_RS01935 0.65 +0.2
434,962 - -1.1
434,962 - DDA3937_RS01935 0.65 +0.0
434,962 - DDA3937_RS01935 0.65 -0.1
434,962 - DDA3937_RS01935 0.65 +0.5
434,962 - DDA3937_RS01935 0.65 -0.4
434,962 - DDA3937_RS01935 0.65 -1.2
434,962 - DDA3937_RS01935 0.65 -1.1
434,962 - DDA3937_RS01935 0.65 -0.7
434,962 - DDA3937_RS01935 0.65 +1.2
434,962 - DDA3937_RS01935 0.65 +0.9
434,962 - DDA3937_RS01935 0.65 -0.6
434,962 - DDA3937_RS01935 0.65 -0.2
434,962 - -0.3
435,042 - DDA3937_RS01935 0.71 +0.1
435,117 + DDA3937_RS01935 0.76 -0.3
435,117 + DDA3937_RS01935 0.76 +1.0
435,117 + DDA3937_RS01935 0.76 -0.5
435,117 + DDA3937_RS01935 0.76 -0.3
435,117 + DDA3937_RS01935 0.76 -2.6
435,118 - DDA3937_RS01935 0.76 -1.0
435,118 - DDA3937_RS01935 0.76 -1.3
435,118 - DDA3937_RS01935 0.76 -1.8
435,118 - DDA3937_RS01935 0.76 -0.8
435,118 - DDA3937_RS01935 0.76 -0.9
435,118 - DDA3937_RS01935 0.76 -1.2
435,118 - DDA3937_RS01935 0.76 +0.2
435,118 - DDA3937_RS01935 0.76 -1.0
435,118 - DDA3937_RS01935 0.76 -1.3
435,118 - DDA3937_RS01935 0.76 -0.3
435,144 - DDA3937_RS01935 0.78 -0.8
435,173 + DDA3937_RS01935 0.80 -0.4
435,173 + DDA3937_RS01935 0.80 +0.3
435,174 - DDA3937_RS01935 0.80 -0.8
435,174 - DDA3937_RS01935 0.80 -0.6
435,174 - DDA3937_RS01935 0.80 +0.6
435,233 + DDA3937_RS01935 0.84 -1.6
435,285 + DDA3937_RS01935 0.88 -1.8
435,459 + -2.0
435,459 + -0.2
435,460 - +1.1
435,460 - -1.9
435,460 - -0.9
435,460 - -0.6
435,557 + +0.2
435,844 + DDA3937_RS01940 0.28 -2.2
435,845 - DDA3937_RS01940 0.28 -0.5
435,883 - DDA3937_RS01940 0.32 +0.4
435,884 + DDA3937_RS01940 0.32 -0.2
435,884 + DDA3937_RS01940 0.32 +0.0
435,884 + DDA3937_RS01940 0.32 +0.2
435,884 + DDA3937_RS01940 0.32 +0.5
435,884 + DDA3937_RS01940 0.32 -1.7
435,884 + DDA3937_RS01940 0.32 -0.7
435,885 - DDA3937_RS01940 0.32 -0.3
435,885 - DDA3937_RS01940 0.32 -0.3
435,885 - DDA3937_RS01940 0.32 +0.1
435,885 - DDA3937_RS01940 0.32 +0.6
435,885 - DDA3937_RS01940 0.32 -0.8
435,895 + DDA3937_RS01940 0.33 +0.1
435,896 - DDA3937_RS01940 0.33 +0.2
436,056 + DDA3937_RS01940 0.49 +0.5
436,056 + DDA3937_RS01940 0.49 +0.6
436,057 - DDA3937_RS01940 0.49 +0.4
436,057 - DDA3937_RS01940 0.49 -1.8
436,068 + DDA3937_RS01940 0.50 -2.5
436,091 + DDA3937_RS01940 0.53 -0.1
436,271 + DDA3937_RS01940 0.70 +0.3
436,271 + DDA3937_RS01940 0.70 -1.3
436,272 - DDA3937_RS01940 0.70 -0.9
436,346 + DDA3937_RS01940 0.78 +0.4
436,347 - DDA3937_RS01940 0.78 -0.1
436,371 - DDA3937_RS01940 0.80 -1.3
436,371 - DDA3937_RS01940 0.80 +1.5

Or see this region's nucleotide sequence