Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS01890

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS01885 and DDA3937_RS01890 are separated by 88 nucleotidesDDA3937_RS01890 and DDA3937_RS01895 are separated by 27 nucleotidesDDA3937_RS01895 and DDA3937_RS01900 overlap by 4 nucleotides DDA3937_RS01885: DDA3937_RS01885 - ABC transporter substrate-binding protein, at 420,830 to 422,371 _RS01885 DDA3937_RS01890: DDA3937_RS01890 - ABC transporter permease, at 422,460 to 423,404 _RS01890 DDA3937_RS01895: DDA3937_RS01895 - ABC transporter permease, at 423,432 to 424,247 _RS01895 DDA3937_RS01900: DDA3937_RS01900 - ABC transporter ATP-binding protein, at 424,244 to 425,851 _RS01900 Position (kb) 422 423 424Strain fitness (log2 ratio) -2 -1 0 1 2 3at 421.528 kb on + strand, within DDA3937_RS01885at 421.721 kb on + strand, within DDA3937_RS01885at 421.722 kb on - strand, within DDA3937_RS01885at 421.722 kb on - strand, within DDA3937_RS01885at 421.722 kb on - strand, within DDA3937_RS01885at 421.952 kb on + strand, within DDA3937_RS01885at 421.952 kb on + strand, within DDA3937_RS01885at 421.993 kb on - strand, within DDA3937_RS01885at 422.264 kb on + strandat 422.264 kb on + strandat 422.265 kb on - strandat 422.898 kb on + strand, within DDA3937_RS01890at 422.902 kb on + strand, within DDA3937_RS01890at 422.966 kb on + strand, within DDA3937_RS01890at 422.966 kb on + strand, within DDA3937_RS01890at 422.966 kb on + strand, within DDA3937_RS01890at 422.966 kb on + strand, within DDA3937_RS01890at 422.967 kb on - strand, within DDA3937_RS01890at 422.967 kb on - strand, within DDA3937_RS01890at 422.967 kb on - strandat 422.967 kb on - strand, within DDA3937_RS01890at 422.967 kb on - strand, within DDA3937_RS01890at 423.067 kb on + strand, within DDA3937_RS01890at 423.068 kb on - strand, within DDA3937_RS01890at 423.087 kb on + strand, within DDA3937_RS01890at 423.087 kb on + strand, within DDA3937_RS01890at 423.088 kb on - strand, within DDA3937_RS01890at 423.088 kb on - strand, within DDA3937_RS01890at 423.088 kb on - strand, within DDA3937_RS01890at 423.088 kb on - strand, within DDA3937_RS01890at 423.145 kb on + strand, within DDA3937_RS01890at 423.145 kb on + strand, within DDA3937_RS01890at 423.145 kb on + strand, within DDA3937_RS01890at 423.145 kb on + strand, within DDA3937_RS01890at 423.145 kb on + strand, within DDA3937_RS01890at 423.146 kb on - strand, within DDA3937_RS01890at 423.146 kb on - strand, within DDA3937_RS01890at 423.180 kb on - strand, within DDA3937_RS01890at 423.188 kb on + strand, within DDA3937_RS01890at 423.188 kb on + strand, within DDA3937_RS01890at 423.189 kb on - strand, within DDA3937_RS01890at 423.189 kb on - strand, within DDA3937_RS01890at 423.189 kb on - strand, within DDA3937_RS01890at 423.198 kb on + strand, within DDA3937_RS01890at 423.198 kb on + strand, within DDA3937_RS01890at 423.198 kb on + strand, within DDA3937_RS01890at 423.199 kb on - strand, within DDA3937_RS01890at 423.199 kb on - strand, within DDA3937_RS01890at 423.199 kb on - strand, within DDA3937_RS01890at 423.258 kb on + strand, within DDA3937_RS01890at 423.258 kb on + strand, within DDA3937_RS01890at 423.258 kb on + strand, within DDA3937_RS01890at 423.258 kb on + strand, within DDA3937_RS01890at 423.258 kb on + strand, within DDA3937_RS01890at 423.258 kb on + strand, within DDA3937_RS01890at 423.258 kb on + strand, within DDA3937_RS01890at 423.259 kb on - strand, within DDA3937_RS01890at 423.259 kb on - strand, within DDA3937_RS01890at 423.259 kb on - strand, within DDA3937_RS01890at 423.259 kb on - strand, within DDA3937_RS01890at 423.259 kb on - strand, within DDA3937_RS01890at 423.259 kb on - strand, within DDA3937_RS01890at 423.259 kb on - strand, within DDA3937_RS01890at 423.330 kb on + strandat 423.330 kb on + strandat 423.330 kb on + strandat 423.331 kb on - strandat 423.331 kb on - strandat 423.331 kb on - strandat 423.331 kb on - strandat 423.423 kb on + strandat 423.424 kb on - strandat 423.424 kb on - strandat 423.796 kb on + strand, within DDA3937_RS01895at 423.797 kb on - strand, within DDA3937_RS01895at 423.797 kb on - strand, within DDA3937_RS01895at 423.865 kb on + strand, within DDA3937_RS01895at 423.868 kb on + strand, within DDA3937_RS01895at 424.211 kb on - strandat 424.211 kb on - strandat 424.226 kb on + strandat 424.226 kb on + strandat 424.319 kb on - strandat 424.324 kb on + strandat 424.324 kb on + strandat 424.327 kb on + strandat 424.327 kb on + strandat 424.327 kb on + strandat 424.328 kb on - strandat 424.328 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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421,528 + DDA3937_RS01885 0.45 -1.4
421,721 + DDA3937_RS01885 0.58 -0.1
421,722 - DDA3937_RS01885 0.58 -0.4
421,722 - DDA3937_RS01885 0.58 -0.7
421,722 - DDA3937_RS01885 0.58 +0.0
421,952 + DDA3937_RS01885 0.73 -0.8
421,952 + DDA3937_RS01885 0.73 +0.1
421,993 - DDA3937_RS01885 0.75 +1.7
422,264 + +1.8
422,264 + -0.8
422,265 - -0.2
422,898 + DDA3937_RS01890 0.46 -0.1
422,902 + DDA3937_RS01890 0.47 -0.4
422,966 + DDA3937_RS01890 0.54 -0.1
422,966 + DDA3937_RS01890 0.54 +0.1
422,966 + DDA3937_RS01890 0.54 -0.3
422,966 + DDA3937_RS01890 0.54 +2.8
422,967 - DDA3937_RS01890 0.54 -0.8
422,967 - DDA3937_RS01890 0.54 -0.4
422,967 - -0.8
422,967 - DDA3937_RS01890 0.54 -0.9
422,967 - DDA3937_RS01890 0.54 +0.9
423,067 + DDA3937_RS01890 0.64 -0.0
423,068 - DDA3937_RS01890 0.64 -0.5
423,087 + DDA3937_RS01890 0.66 -0.1
423,087 + DDA3937_RS01890 0.66 +0.1
423,088 - DDA3937_RS01890 0.66 -0.4
423,088 - DDA3937_RS01890 0.66 +0.5
423,088 - DDA3937_RS01890 0.66 -2.4
423,088 - DDA3937_RS01890 0.66 -0.4
423,145 + DDA3937_RS01890 0.72 -0.7
423,145 + DDA3937_RS01890 0.72 -1.0
423,145 + DDA3937_RS01890 0.72 +0.1
423,145 + DDA3937_RS01890 0.72 -0.6
423,145 + DDA3937_RS01890 0.72 -1.2
423,146 - DDA3937_RS01890 0.73 -0.9
423,146 - DDA3937_RS01890 0.73 +0.1
423,180 - DDA3937_RS01890 0.76 -1.0
423,188 + DDA3937_RS01890 0.77 -0.7
423,188 + DDA3937_RS01890 0.77 -0.9
423,189 - DDA3937_RS01890 0.77 -0.1
423,189 - DDA3937_RS01890 0.77 +0.1
423,189 - DDA3937_RS01890 0.77 -1.0
423,198 + DDA3937_RS01890 0.78 +0.0
423,198 + DDA3937_RS01890 0.78 +1.1
423,198 + DDA3937_RS01890 0.78 -0.3
423,199 - DDA3937_RS01890 0.78 -0.3
423,199 - DDA3937_RS01890 0.78 +0.3
423,199 - DDA3937_RS01890 0.78 -0.9
423,258 + DDA3937_RS01890 0.84 -0.4
423,258 + DDA3937_RS01890 0.84 -0.5
423,258 + DDA3937_RS01890 0.84 -2.1
423,258 + DDA3937_RS01890 0.84 -0.6
423,258 + DDA3937_RS01890 0.84 -0.6
423,258 + DDA3937_RS01890 0.84 +1.5
423,258 + DDA3937_RS01890 0.84 -0.0
423,259 - DDA3937_RS01890 0.85 -0.2
423,259 - DDA3937_RS01890 0.85 -1.0
423,259 - DDA3937_RS01890 0.85 -1.4
423,259 - DDA3937_RS01890 0.85 -0.0
423,259 - DDA3937_RS01890 0.85 +0.1
423,259 - DDA3937_RS01890 0.85 -0.5
423,259 - DDA3937_RS01890 0.85 -0.4
423,330 + -0.1
423,330 + -0.5
423,330 + -1.1
423,331 - -2.0
423,331 - -0.4
423,331 - -0.4
423,331 - +0.1
423,423 + +2.0
423,424 - +0.4
423,424 - +0.9
423,796 + DDA3937_RS01895 0.45 -0.3
423,797 - DDA3937_RS01895 0.45 +0.9
423,797 - DDA3937_RS01895 0.45 -0.2
423,865 + DDA3937_RS01895 0.53 +0.1
423,868 + DDA3937_RS01895 0.53 -0.5
424,211 - +0.0
424,211 - -1.9
424,226 + +0.2
424,226 + -0.4
424,319 - +0.8
424,324 + +1.1
424,324 + -0.3
424,327 + -1.3
424,327 + +0.0
424,327 + +0.1
424,328 - +0.6
424,328 - +0.2

Or see this region's nucleotide sequence