Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS01880

Experiment: LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDDA3937_RS01875 and DDA3937_RS01880 are separated by 394 nucleotidesDDA3937_RS01880 and DDA3937_RS01885 are separated by 73 nucleotides DDA3937_RS01875: DDA3937_RS01875 - anaerobic ribonucleoside-triphosphate reductase, at 417,315 to 419,453 _RS01875 DDA3937_RS01880: DDA3937_RS01880 - homocysteine S-methyltransferase family protein, at 419,848 to 420,756 _RS01880 DDA3937_RS01885: DDA3937_RS01885 - ABC transporter substrate-binding protein, at 420,830 to 422,371 _RS01885 Position (kb) 419 420 421Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 418.859 kb on + strand, within DDA3937_RS01875at 419.127 kb on - strand, within DDA3937_RS01875at 419.212 kb on + strand, within DDA3937_RS01875at 419.212 kb on + strand, within DDA3937_RS01875at 419.212 kb on + strand, within DDA3937_RS01875at 419.212 kb on + strand, within DDA3937_RS01875at 419.212 kb on + strand, within DDA3937_RS01875at 419.212 kb on + strand, within DDA3937_RS01875at 419.212 kb on + strand, within DDA3937_RS01875at 419.212 kb on + strand, within DDA3937_RS01875at 419.212 kb on + strand, within DDA3937_RS01875at 419.213 kb on - strand, within DDA3937_RS01875at 419.213 kb on - strand, within DDA3937_RS01875at 419.213 kb on - strand, within DDA3937_RS01875at 419.213 kb on - strand, within DDA3937_RS01875at 419.233 kb on + strand, within DDA3937_RS01875at 419.341 kb on + strandat 419.341 kb on + strandat 419.341 kb on + strandat 419.342 kb on - strandat 419.556 kb on - strandat 419.556 kb on - strandat 419.577 kb on + strandat 419.584 kb on + strandat 419.585 kb on - strandat 419.585 kb on - strandat 419.586 kb on + strandat 419.586 kb on + strandat 419.587 kb on - strandat 419.587 kb on - strandat 419.587 kb on - strandat 419.588 kb on + strandat 419.663 kb on - strandat 419.663 kb on - strandat 419.686 kb on - strandat 419.686 kb on - strandat 419.768 kb on + strandat 419.768 kb on + strandat 419.792 kb on - strandat 419.792 kb on - strandat 419.836 kb on + strandat 419.975 kb on + strand, within DDA3937_RS01880at 419.975 kb on + strand, within DDA3937_RS01880at 419.975 kb on + strand, within DDA3937_RS01880at 419.975 kb on + strand, within DDA3937_RS01880at 419.975 kb on + strand, within DDA3937_RS01880at 419.975 kb on + strand, within DDA3937_RS01880at 419.975 kb on + strand, within DDA3937_RS01880at 419.976 kb on - strand, within DDA3937_RS01880at 419.976 kb on - strand, within DDA3937_RS01880at 419.986 kb on + strand, within DDA3937_RS01880at 419.986 kb on + strand, within DDA3937_RS01880at 419.986 kb on + strand, within DDA3937_RS01880at 419.986 kb on + strand, within DDA3937_RS01880at 419.986 kb on + strand, within DDA3937_RS01880at 419.986 kb on + strand, within DDA3937_RS01880at 419.986 kb on + strand, within DDA3937_RS01880at 419.986 kb on + strand, within DDA3937_RS01880at 419.986 kb on + strand, within DDA3937_RS01880at 419.986 kb on + strand, within DDA3937_RS01880at 419.986 kb on + strand, within DDA3937_RS01880at 419.986 kb on + strand, within DDA3937_RS01880at 419.986 kb on + strand, within DDA3937_RS01880at 419.986 kb on + strand, within DDA3937_RS01880at 419.986 kb on + strand, within DDA3937_RS01880at 419.986 kb on + strand, within DDA3937_RS01880at 419.986 kb on + strand, within DDA3937_RS01880at 419.986 kb on + strand, within DDA3937_RS01880at 419.987 kb on - strand, within DDA3937_RS01880at 419.987 kb on - strand, within DDA3937_RS01880at 419.987 kb on - strand, within DDA3937_RS01880at 419.987 kb on - strand, within DDA3937_RS01880at 419.987 kb on - strand, within DDA3937_RS01880at 419.987 kb on - strand, within DDA3937_RS01880at 419.987 kb on - strand, within DDA3937_RS01880at 419.987 kb on - strand, within DDA3937_RS01880at 420.012 kb on + strand, within DDA3937_RS01880at 420.025 kb on + strand, within DDA3937_RS01880at 420.046 kb on - strand, within DDA3937_RS01880at 420.046 kb on - strand, within DDA3937_RS01880at 420.046 kb on - strand, within DDA3937_RS01880at 420.250 kb on + strand, within DDA3937_RS01880at 420.250 kb on + strand, within DDA3937_RS01880at 420.352 kb on - strand, within DDA3937_RS01880at 420.352 kb on - strand, within DDA3937_RS01880at 420.462 kb on + strand, within DDA3937_RS01880at 420.462 kb on + strand, within DDA3937_RS01880at 420.462 kb on + strand, within DDA3937_RS01880at 420.463 kb on - strand, within DDA3937_RS01880at 420.468 kb on + strand, within DDA3937_RS01880at 420.553 kb on + strand, within DDA3937_RS01880at 420.553 kb on + strand, within DDA3937_RS01880at 420.553 kb on + strand, within DDA3937_RS01880at 420.554 kb on - strand, within DDA3937_RS01880at 420.554 kb on - strand, within DDA3937_RS01880at 420.579 kb on + strand, within DDA3937_RS01880at 420.640 kb on + strand, within DDA3937_RS01880at 420.641 kb on - strand, within DDA3937_RS01880at 420.783 kb on - strandat 420.786 kb on - strandat 420.786 kb on - strandat 420.786 kb on - strandat 420.786 kb on - strandat 420.786 kb on - strandat 420.786 kb on - strandat 420.847 kb on + strandat 420.848 kb on - strandat 421.019 kb on + strand, within DDA3937_RS01885at 421.019 kb on + strand, within DDA3937_RS01885at 421.019 kb on + strand, within DDA3937_RS01885at 421.019 kb on + strand, within DDA3937_RS01885at 421.019 kb on + strand, within DDA3937_RS01885at 421.019 kb on + strand, within DDA3937_RS01885at 421.019 kb on + strand, within DDA3937_RS01885at 421.020 kb on - strand, within DDA3937_RS01885at 421.020 kb on - strand, within DDA3937_RS01885at 421.020 kb on - strand, within DDA3937_RS01885at 421.020 kb on - strand, within DDA3937_RS01885at 421.020 kb on - strand, within DDA3937_RS01885at 421.020 kb on - strand, within DDA3937_RS01885at 421.020 kb on - strand, within DDA3937_RS01885at 421.021 kb on + strand, within DDA3937_RS01885at 421.021 kb on + strand, within DDA3937_RS01885at 421.021 kb on + strand, within DDA3937_RS01885at 421.021 kb on + strand, within DDA3937_RS01885at 421.021 kb on + strand, within DDA3937_RS01885at 421.021 kb on + strand, within DDA3937_RS01885at 421.021 kb on + strand, within DDA3937_RS01885at 421.022 kb on - strand, within DDA3937_RS01885at 421.022 kb on - strand, within DDA3937_RS01885at 421.022 kb on - strand, within DDA3937_RS01885at 421.022 kb on - strand, within DDA3937_RS01885at 421.022 kb on - strandat 421.022 kb on - strand, within DDA3937_RS01885at 421.022 kb on - strand, within DDA3937_RS01885at 421.022 kb on - strand, within DDA3937_RS01885at 421.025 kb on + strand, within DDA3937_RS01885at 421.025 kb on + strand, within DDA3937_RS01885at 421.025 kb on + strand, within DDA3937_RS01885at 421.025 kb on + strand, within DDA3937_RS01885at 421.025 kb on + strand, within DDA3937_RS01885at 421.025 kb on + strand, within DDA3937_RS01885at 421.025 kb on + strandat 421.025 kb on + strand, within DDA3937_RS01885at 421.025 kb on + strand, within DDA3937_RS01885at 421.025 kb on + strand, within DDA3937_RS01885at 421.025 kb on + strand, within DDA3937_RS01885at 421.026 kb on - strand, within DDA3937_RS01885at 421.026 kb on - strand, within DDA3937_RS01885at 421.026 kb on - strand, within DDA3937_RS01885at 421.026 kb on - strand, within DDA3937_RS01885at 421.026 kb on - strand, within DDA3937_RS01885at 421.158 kb on + strand, within DDA3937_RS01885at 421.158 kb on + strand, within DDA3937_RS01885at 421.159 kb on - strand, within DDA3937_RS01885at 421.177 kb on + strand, within DDA3937_RS01885at 421.203 kb on - strand, within DDA3937_RS01885at 421.254 kb on - strand, within DDA3937_RS01885at 421.345 kb on - strand, within DDA3937_RS01885at 421.415 kb on - strand, within DDA3937_RS01885at 421.415 kb on - strand, within DDA3937_RS01885at 421.415 kb on - strand, within DDA3937_RS01885at 421.444 kb on + strand, within DDA3937_RS01885at 421.528 kb on + strand, within DDA3937_RS01885at 421.721 kb on + strand, within DDA3937_RS01885at 421.722 kb on - strand, within DDA3937_RS01885at 421.722 kb on - strand, within DDA3937_RS01885at 421.722 kb on - strand, within DDA3937_RS01885

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB
remove
418,859 + DDA3937_RS01875 0.72 -0.2
419,127 - DDA3937_RS01875 0.85 -0.1
419,212 + DDA3937_RS01875 0.89 +2.0
419,212 + DDA3937_RS01875 0.89 -1.6
419,212 + DDA3937_RS01875 0.89 -0.1
419,212 + DDA3937_RS01875 0.89 +0.1
419,212 + DDA3937_RS01875 0.89 -0.7
419,212 + DDA3937_RS01875 0.89 +2.2
419,212 + DDA3937_RS01875 0.89 +0.1
419,212 + DDA3937_RS01875 0.89 -2.6
419,212 + DDA3937_RS01875 0.89 -0.4
419,213 - DDA3937_RS01875 0.89 -0.4
419,213 - DDA3937_RS01875 0.89 -0.7
419,213 - DDA3937_RS01875 0.89 -0.3
419,213 - DDA3937_RS01875 0.89 +0.5
419,233 + DDA3937_RS01875 0.90 +2.2
419,341 + -0.6
419,341 + -0.0
419,341 + -1.6
419,342 - -0.5
419,556 - +2.2
419,556 - +0.7
419,577 + +0.6
419,584 + -0.6
419,585 - +0.6
419,585 - -0.6
419,586 + +0.2
419,586 + -0.8
419,587 - -0.4
419,587 - -0.9
419,587 - +1.2
419,588 + -0.6
419,663 - -1.9
419,663 - +0.3
419,686 - -1.1
419,686 - +0.3
419,768 + -0.8
419,768 + +1.8
419,792 - +0.2
419,792 - -0.4
419,836 + -1.2
419,975 + DDA3937_RS01880 0.14 +1.2
419,975 + DDA3937_RS01880 0.14 -0.1
419,975 + DDA3937_RS01880 0.14 +0.0
419,975 + DDA3937_RS01880 0.14 +0.5
419,975 + DDA3937_RS01880 0.14 +1.1
419,975 + DDA3937_RS01880 0.14 -0.1
419,975 + DDA3937_RS01880 0.14 -1.1
419,976 - DDA3937_RS01880 0.14 +0.9
419,976 - DDA3937_RS01880 0.14 -0.2
419,986 + DDA3937_RS01880 0.15 -0.2
419,986 + DDA3937_RS01880 0.15 -0.4
419,986 + DDA3937_RS01880 0.15 -1.1
419,986 + DDA3937_RS01880 0.15 -0.8
419,986 + DDA3937_RS01880 0.15 -0.2
419,986 + DDA3937_RS01880 0.15 +1.2
419,986 + DDA3937_RS01880 0.15 -1.1
419,986 + DDA3937_RS01880 0.15 +1.0
419,986 + DDA3937_RS01880 0.15 +0.3
419,986 + DDA3937_RS01880 0.15 +0.1
419,986 + DDA3937_RS01880 0.15 -0.1
419,986 + DDA3937_RS01880 0.15 -0.1
419,986 + DDA3937_RS01880 0.15 -0.4
419,986 + DDA3937_RS01880 0.15 +0.2
419,986 + DDA3937_RS01880 0.15 +0.6
419,986 + DDA3937_RS01880 0.15 +1.2
419,986 + DDA3937_RS01880 0.15 +0.6
419,986 + DDA3937_RS01880 0.15 -0.8
419,987 - DDA3937_RS01880 0.15 -0.4
419,987 - DDA3937_RS01880 0.15 -0.1
419,987 - DDA3937_RS01880 0.15 -1.1
419,987 - DDA3937_RS01880 0.15 +1.0
419,987 - DDA3937_RS01880 0.15 +0.4
419,987 - DDA3937_RS01880 0.15 -0.6
419,987 - DDA3937_RS01880 0.15 -0.4
419,987 - DDA3937_RS01880 0.15 +0.3
420,012 + DDA3937_RS01880 0.18 +0.5
420,025 + DDA3937_RS01880 0.19 +0.9
420,046 - DDA3937_RS01880 0.22 -2.0
420,046 - DDA3937_RS01880 0.22 -0.1
420,046 - DDA3937_RS01880 0.22 +0.4
420,250 + DDA3937_RS01880 0.44 +0.4
420,250 + DDA3937_RS01880 0.44 -0.8
420,352 - DDA3937_RS01880 0.55 +0.6
420,352 - DDA3937_RS01880 0.55 -0.1
420,462 + DDA3937_RS01880 0.68 -1.1
420,462 + DDA3937_RS01880 0.68 -0.1
420,462 + DDA3937_RS01880 0.68 -0.8
420,463 - DDA3937_RS01880 0.68 +0.5
420,468 + DDA3937_RS01880 0.68 +0.3
420,553 + DDA3937_RS01880 0.78 -0.1
420,553 + DDA3937_RS01880 0.78 +0.2
420,553 + DDA3937_RS01880 0.78 -1.4
420,554 - DDA3937_RS01880 0.78 +0.6
420,554 - DDA3937_RS01880 0.78 +0.4
420,579 + DDA3937_RS01880 0.80 +0.2
420,640 + DDA3937_RS01880 0.87 +0.4
420,641 - DDA3937_RS01880 0.87 +1.2
420,783 - -0.5
420,786 - -0.4
420,786 - -0.7
420,786 - +0.3
420,786 - +0.0
420,786 - -1.1
420,786 - -0.8
420,847 + -0.1
420,848 - +0.2
421,019 + DDA3937_RS01885 0.12 +0.2
421,019 + DDA3937_RS01885 0.12 -0.4
421,019 + DDA3937_RS01885 0.12 +0.4
421,019 + DDA3937_RS01885 0.12 +0.2
421,019 + DDA3937_RS01885 0.12 -1.0
421,019 + DDA3937_RS01885 0.12 -0.1
421,019 + DDA3937_RS01885 0.12 +0.3
421,020 - DDA3937_RS01885 0.12 +0.9
421,020 - DDA3937_RS01885 0.12 -2.9
421,020 - DDA3937_RS01885 0.12 -0.1
421,020 - DDA3937_RS01885 0.12 +0.0
421,020 - DDA3937_RS01885 0.12 +0.3
421,020 - DDA3937_RS01885 0.12 +0.2
421,020 - DDA3937_RS01885 0.12 +0.3
421,021 + DDA3937_RS01885 0.12 -0.5
421,021 + DDA3937_RS01885 0.12 -0.8
421,021 + DDA3937_RS01885 0.12 -0.1
421,021 + DDA3937_RS01885 0.12 +0.3
421,021 + DDA3937_RS01885 0.12 +0.2
421,021 + DDA3937_RS01885 0.12 +0.5
421,021 + DDA3937_RS01885 0.12 -0.9
421,022 - DDA3937_RS01885 0.12 +0.9
421,022 - DDA3937_RS01885 0.12 +0.2
421,022 - DDA3937_RS01885 0.12 -1.4
421,022 - DDA3937_RS01885 0.12 -0.4
421,022 - -0.8
421,022 - DDA3937_RS01885 0.12 -0.2
421,022 - DDA3937_RS01885 0.12 +0.2
421,022 - DDA3937_RS01885 0.12 +0.4
421,025 + DDA3937_RS01885 0.13 +0.7
421,025 + DDA3937_RS01885 0.13 +0.3
421,025 + DDA3937_RS01885 0.13 +0.3
421,025 + DDA3937_RS01885 0.13 -0.4
421,025 + DDA3937_RS01885 0.13 -0.2
421,025 + DDA3937_RS01885 0.13 -0.5
421,025 + -0.4
421,025 + DDA3937_RS01885 0.13 -0.3
421,025 + DDA3937_RS01885 0.13 -2.5
421,025 + DDA3937_RS01885 0.13 +0.1
421,025 + DDA3937_RS01885 0.13 -0.2
421,026 - DDA3937_RS01885 0.13 -0.2
421,026 - DDA3937_RS01885 0.13 +0.3
421,026 - DDA3937_RS01885 0.13 +0.5
421,026 - DDA3937_RS01885 0.13 +1.0
421,026 - DDA3937_RS01885 0.13 -0.3
421,158 + DDA3937_RS01885 0.21 -0.5
421,158 + DDA3937_RS01885 0.21 +0.1
421,159 - DDA3937_RS01885 0.21 +0.2
421,177 + DDA3937_RS01885 0.23 -1.4
421,203 - DDA3937_RS01885 0.24 -0.7
421,254 - DDA3937_RS01885 0.27 -0.5
421,345 - DDA3937_RS01885 0.33 -0.1
421,415 - DDA3937_RS01885 0.38 -0.1
421,415 - DDA3937_RS01885 0.38 -0.0
421,415 - DDA3937_RS01885 0.38 -0.6
421,444 + DDA3937_RS01885 0.40 -0.6
421,528 + DDA3937_RS01885 0.45 -1.4
421,721 + DDA3937_RS01885 0.58 -0.1
421,722 - DDA3937_RS01885 0.58 -0.4
421,722 - DDA3937_RS01885 0.58 -0.7
421,722 - DDA3937_RS01885 0.58 +0.0

Or see this region's nucleotide sequence