Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS01855 and DDA3937_RS01860 are separated by 795 nucleotides DDA3937_RS01860 and DDA3937_RS01865 are separated by 385 nucleotides DDA3937_RS01865 and DDA3937_RS01870 are separated by 108 nucleotides
DDA3937_RS01855: DDA3937_RS01855 - aminoimidazole riboside kinase, at 412,577 to 413,500
_RS01855
DDA3937_RS01860: DDA3937_RS01860 - type I-E CRISPR-associated protein Cse1/CasA, at 414,296 to 415,804
_RS01860
DDA3937_RS01865: DDA3937_RS01865 - YhbP family protein, at 416,190 to 416,642
_RS01865
DDA3937_RS01870: DDA3937_RS01870 - anaerobic ribonucleoside-triphosphate reductase-activating protein, at 416,751 to 417,215
_RS01870
Position (kb) 414
415
416 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 413.433 kb on + strand at 413.486 kb on + strand at 413.500 kb on + strand at 413.500 kb on + strand at 413.500 kb on + strand at 413.500 kb on + strand at 413.500 kb on + strand at 413.500 kb on + strand at 413.501 kb on - strand at 413.501 kb on - strand at 413.501 kb on - strand at 413.501 kb on - strand at 413.501 kb on - strand at 413.504 kb on + strand at 413.505 kb on - strand at 413.505 kb on - strand at 413.505 kb on - strand at 413.521 kb on + strand at 413.525 kb on + strand at 413.525 kb on + strand at 413.662 kb on + strand at 413.663 kb on - strand at 413.710 kb on + strand at 413.715 kb on - strand at 413.727 kb on + strand at 413.734 kb on + strand at 413.735 kb on - strand at 413.749 kb on - strand at 413.751 kb on + strand at 413.754 kb on - strand at 413.754 kb on - strand at 413.754 kb on - strand at 413.757 kb on - strand at 413.757 kb on - strand at 413.757 kb on - strand at 413.757 kb on - strand at 413.762 kb on + strand at 413.763 kb on - strand at 413.763 kb on - strand at 413.765 kb on + strand at 413.765 kb on + strand at 413.766 kb on - strand at 413.768 kb on - strand at 413.772 kb on - strand at 413.784 kb on + strand at 413.785 kb on - strand at 413.809 kb on + strand at 413.817 kb on - strand at 413.870 kb on + strand at 413.875 kb on + strand at 413.875 kb on + strand at 413.876 kb on - strand at 413.876 kb on - strand at 413.905 kb on - strand at 413.950 kb on + strand at 413.951 kb on - strand at 414.008 kb on - strand at 414.008 kb on - strand at 414.105 kb on - strand at 414.118 kb on + strand at 414.118 kb on + strand at 414.119 kb on - strand at 414.242 kb on + strand at 414.289 kb on + strand at 414.290 kb on - strand at 414.290 kb on - strand at 414.290 kb on - strand at 414.290 kb on - strand at 414.290 kb on - strand at 414.333 kb on + strand at 414.334 kb on - strand at 414.391 kb on + strand at 414.391 kb on + strand at 414.391 kb on + strand at 414.391 kb on + strand at 414.391 kb on + strand at 414.391 kb on + strand at 414.392 kb on - strand at 414.392 kb on - strand at 414.595 kb on + strand, within DDA3937_RS01860 at 414.602 kb on + strand, within DDA3937_RS01860 at 414.602 kb on + strand, within DDA3937_RS01860 at 414.603 kb on - strand, within DDA3937_RS01860 at 414.645 kb on + strand, within DDA3937_RS01860 at 414.645 kb on + strand, within DDA3937_RS01860 at 414.646 kb on - strand at 414.889 kb on - strand, within DDA3937_RS01860 at 414.889 kb on - strand, within DDA3937_RS01860 at 415.250 kb on + strand, within DDA3937_RS01860 at 415.364 kb on + strand, within DDA3937_RS01860 at 415.365 kb on - strand, within DDA3937_RS01860 at 415.365 kb on - strand, within DDA3937_RS01860 at 415.376 kb on - strand, within DDA3937_RS01860 at 415.376 kb on - strand, within DDA3937_RS01860 at 415.407 kb on + strand, within DDA3937_RS01860 at 415.407 kb on + strand, within DDA3937_RS01860 at 415.407 kb on + strand, within DDA3937_RS01860 at 415.415 kb on + strand, within DDA3937_RS01860 at 415.416 kb on - strand, within DDA3937_RS01860 at 415.416 kb on - strand, within DDA3937_RS01860 at 415.510 kb on + strand, within DDA3937_RS01860 at 415.511 kb on - strand, within DDA3937_RS01860 at 415.562 kb on + strand, within DDA3937_RS01860 at 415.562 kb on + strand, within DDA3937_RS01860 at 415.562 kb on + strand, within DDA3937_RS01860 at 415.562 kb on + strand, within DDA3937_RS01860 at 415.562 kb on + strand, within DDA3937_RS01860 at 415.563 kb on - strand, within DDA3937_RS01860 at 415.563 kb on - strand, within DDA3937_RS01860 at 415.563 kb on - strand, within DDA3937_RS01860 at 415.625 kb on + strand, within DDA3937_RS01860 at 415.625 kb on + strand, within DDA3937_RS01860 at 415.625 kb on + strand, within DDA3937_RS01860 at 415.625 kb on + strand, within DDA3937_RS01860 at 415.625 kb on + strand, within DDA3937_RS01860 at 415.625 kb on + strand, within DDA3937_RS01860 at 415.625 kb on + strand, within DDA3937_RS01860 at 415.625 kb on + strand, within DDA3937_RS01860 at 415.626 kb on - strand, within DDA3937_RS01860 at 415.626 kb on - strand, within DDA3937_RS01860 at 415.626 kb on - strand, within DDA3937_RS01860 at 415.626 kb on - strand, within DDA3937_RS01860 at 415.626 kb on - strand, within DDA3937_RS01860 at 415.626 kb on - strand, within DDA3937_RS01860 at 415.626 kb on - strand, within DDA3937_RS01860 at 415.632 kb on - strand, within DDA3937_RS01860 at 415.677 kb on + strand at 415.677 kb on + strand at 415.678 kb on - strand at 415.678 kb on - strand at 415.678 kb on - strand at 415.678 kb on - strand at 415.678 kb on - strand at 415.678 kb on - strand at 415.678 kb on - strand at 415.714 kb on + strand at 415.714 kb on + strand at 415.715 kb on - strand at 415.715 kb on - strand at 415.715 kb on - strand at 415.717 kb on + strand at 415.718 kb on - strand at 415.718 kb on - strand at 415.718 kb on - strand at 415.753 kb on - strand at 415.870 kb on + strand at 415.889 kb on + strand at 415.916 kb on + strand at 415.916 kb on + strand at 415.917 kb on - strand at 415.917 kb on - strand at 415.917 kb on - strand at 415.920 kb on + strand at 415.920 kb on + strand at 415.920 kb on + strand at 415.920 kb on + strand at 415.920 kb on + strand at 415.920 kb on + strand at 415.920 kb on + strand at 415.920 kb on + strand at 415.921 kb on - strand at 415.921 kb on - strand at 415.921 kb on - strand at 415.921 kb on - strand at 415.975 kb on + strand at 415.975 kb on + strand at 415.975 kb on + strand at 415.975 kb on + strand at 415.975 kb on + strand at 415.976 kb on - strand at 415.976 kb on - strand at 415.976 kb on - strand at 415.976 kb on - strand at 416.071 kb on + strand at 416.090 kb on + strand at 416.112 kb on + strand at 416.112 kb on + strand at 416.112 kb on + strand at 416.113 kb on - strand at 416.113 kb on - strand at 416.113 kb on - strand at 416.113 kb on - strand at 416.129 kb on - strand at 416.164 kb on - strand at 416.204 kb on + strand at 416.205 kb on - strand at 416.226 kb on + strand at 416.278 kb on + strand, within DDA3937_RS01865 at 416.278 kb on + strand, within DDA3937_RS01865 at 416.278 kb on + strand, within DDA3937_RS01865 at 416.298 kb on + strand, within DDA3937_RS01865 at 416.298 kb on + strand, within DDA3937_RS01865 at 416.328 kb on + strand, within DDA3937_RS01865 at 416.367 kb on - strand, within DDA3937_RS01865 at 416.499 kb on + strand, within DDA3937_RS01865 at 416.499 kb on + strand, within DDA3937_RS01865 at 416.501 kb on + strand, within DDA3937_RS01865 at 416.501 kb on + strand, within DDA3937_RS01865 at 416.622 kb on - strand at 416.640 kb on + strand at 416.640 kb on + strand at 416.641 kb on - strand at 416.690 kb on - strand at 416.692 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 413,433 + -0.5 413,486 + -2.1 413,500 + -0.5 413,500 + -1.1 413,500 + -0.0 413,500 + +0.6 413,500 + -0.4 413,500 + -1.1 413,501 - -0.0 413,501 - +0.3 413,501 - +0.7 413,501 - +0.8 413,501 - +1.6 413,504 + -1.0 413,505 - -0.3 413,505 - +0.2 413,505 - -1.6 413,521 + +0.8 413,525 + +0.7 413,525 + +0.2 413,662 + -2.1 413,663 - -0.5 413,710 + +0.1 413,715 - -0.1 413,727 + -0.6 413,734 + +0.1 413,735 - -0.1 413,749 - -0.3 413,751 + -0.6 413,754 - -0.1 413,754 - -0.2 413,754 - -0.4 413,757 - -0.7 413,757 - +1.5 413,757 - -0.0 413,757 - -0.2 413,762 + -0.4 413,763 - -0.5 413,763 - -1.8 413,765 + +0.9 413,765 + +0.0 413,766 - -0.6 413,768 - -1.8 413,772 - +0.7 413,784 + +0.3 413,785 - +1.5 413,809 + +0.2 413,817 - -1.2 413,870 + -0.2 413,875 + -0.1 413,875 + +0.1 413,876 - +0.7 413,876 - +0.4 413,905 - -0.2 413,950 + +1.2 413,951 - -0.0 414,008 - -0.5 414,008 - -0.2 414,105 - +0.3 414,118 + -1.0 414,118 + +0.0 414,119 - +1.0 414,242 + -0.3 414,289 + -0.2 414,290 - -2.0 414,290 - +0.5 414,290 - -1.0 414,290 - -0.8 414,290 - -1.2 414,333 + +0.2 414,334 - -0.0 414,391 + +2.5 414,391 + -0.5 414,391 + -1.4 414,391 + +0.4 414,391 + -0.1 414,391 + +0.9 414,392 - -0.5 414,392 - -0.6 414,595 + DDA3937_RS01860 0.20 +0.1 414,602 + DDA3937_RS01860 0.20 +0.9 414,602 + DDA3937_RS01860 0.20 -0.1 414,603 - DDA3937_RS01860 0.20 +0.8 414,645 + DDA3937_RS01860 0.23 -2.1 414,645 + DDA3937_RS01860 0.23 -0.6 414,646 - -0.3 414,889 - DDA3937_RS01860 0.39 -0.1 414,889 - DDA3937_RS01860 0.39 -0.0 415,250 + DDA3937_RS01860 0.63 +0.6 415,364 + DDA3937_RS01860 0.71 +0.1 415,365 - DDA3937_RS01860 0.71 +0.6 415,365 - DDA3937_RS01860 0.71 +0.4 415,376 - DDA3937_RS01860 0.72 +0.2 415,376 - DDA3937_RS01860 0.72 -0.8 415,407 + DDA3937_RS01860 0.74 -0.5 415,407 + DDA3937_RS01860 0.74 +0.9 415,407 + DDA3937_RS01860 0.74 +0.8 415,415 + DDA3937_RS01860 0.74 -0.3 415,416 - DDA3937_RS01860 0.74 -0.8 415,416 - DDA3937_RS01860 0.74 +0.2 415,510 + DDA3937_RS01860 0.80 +0.2 415,511 - DDA3937_RS01860 0.81 +0.2 415,562 + DDA3937_RS01860 0.84 +0.8 415,562 + DDA3937_RS01860 0.84 -0.6 415,562 + DDA3937_RS01860 0.84 +0.8 415,562 + DDA3937_RS01860 0.84 +0.1 415,562 + DDA3937_RS01860 0.84 -1.6 415,563 - DDA3937_RS01860 0.84 +0.5 415,563 - DDA3937_RS01860 0.84 -0.3 415,563 - DDA3937_RS01860 0.84 -0.5 415,625 + DDA3937_RS01860 0.88 -0.1 415,625 + DDA3937_RS01860 0.88 -1.6 415,625 + DDA3937_RS01860 0.88 +0.8 415,625 + DDA3937_RS01860 0.88 -0.6 415,625 + DDA3937_RS01860 0.88 +0.4 415,625 + DDA3937_RS01860 0.88 +0.0 415,625 + DDA3937_RS01860 0.88 -0.3 415,625 + DDA3937_RS01860 0.88 -0.1 415,626 - DDA3937_RS01860 0.88 -0.8 415,626 - DDA3937_RS01860 0.88 +0.2 415,626 - DDA3937_RS01860 0.88 +0.4 415,626 - DDA3937_RS01860 0.88 +0.3 415,626 - DDA3937_RS01860 0.88 +1.8 415,626 - DDA3937_RS01860 0.88 -0.3 415,626 - DDA3937_RS01860 0.88 -0.2 415,632 - DDA3937_RS01860 0.89 -1.3 415,677 + +0.6 415,677 + -0.9 415,678 - -1.7 415,678 - +0.3 415,678 - +0.1 415,678 - -0.8 415,678 - -0.5 415,678 - +0.7 415,678 - -0.7 415,714 + +2.8 415,714 + +0.9 415,715 - -1.1 415,715 - -0.6 415,715 - -0.9 415,717 + -1.0 415,718 - -0.2 415,718 - +0.0 415,718 - -0.3 415,753 - -1.0 415,870 + -0.0 415,889 + +0.5 415,916 + -0.6 415,916 + +0.7 415,917 - +0.5 415,917 - +0.9 415,917 - -0.4 415,920 + -0.0 415,920 + -0.2 415,920 + -0.3 415,920 + -0.1 415,920 + +0.0 415,920 + -1.3 415,920 + -1.0 415,920 + +1.1 415,921 - -0.6 415,921 - -1.0 415,921 - -0.8 415,921 - +0.1 415,975 + -0.5 415,975 + -0.8 415,975 + +0.6 415,975 + +0.2 415,975 + +0.9 415,976 - -0.5 415,976 - -0.9 415,976 - +0.1 415,976 - +1.1 416,071 + -1.2 416,090 + +0.5 416,112 + +1.2 416,112 + -0.2 416,112 + -0.5 416,113 - +0.8 416,113 - -1.1 416,113 - -1.2 416,113 - -1.3 416,129 - -0.0 416,164 - +0.0 416,204 + -0.1 416,205 - -1.0 416,226 + -1.1 416,278 + DDA3937_RS01865 0.19 -1.8 416,278 + DDA3937_RS01865 0.19 +0.8 416,278 + DDA3937_RS01865 0.19 -0.9 416,298 + DDA3937_RS01865 0.24 -1.6 416,298 + DDA3937_RS01865 0.24 -0.5 416,328 + DDA3937_RS01865 0.30 +0.1 416,367 - DDA3937_RS01865 0.39 +0.9 416,499 + DDA3937_RS01865 0.68 -0.1 416,499 + DDA3937_RS01865 0.68 -1.2 416,501 + DDA3937_RS01865 0.69 -0.5 416,501 + DDA3937_RS01865 0.69 -1.8 416,622 - -0.2 416,640 + -0.7 416,640 + -0.5 416,641 - -0.3 416,690 - +0.8 416,692 - +0.2
Or see this region's nucleotide sequence