Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS01850 and DDA3937_RS01855 are separated by 193 nucleotides DDA3937_RS01855 and DDA3937_RS01860 are separated by 795 nucleotides
DDA3937_RS01850: DDA3937_RS01850 - carbohydrate porin, at 410,767 to 412,383
_RS01850
DDA3937_RS01855: DDA3937_RS01855 - aminoimidazole riboside kinase, at 412,577 to 413,500
_RS01855
DDA3937_RS01860: DDA3937_RS01860 - type I-E CRISPR-associated protein Cse1/CasA, at 414,296 to 415,804
_RS01860
Position (kb) 412
413
414 Strain fitness (log2 ratio) -2
-1
0
1
2 at 411.593 kb on + strand, within DDA3937_RS01850 at 411.593 kb on + strand, within DDA3937_RS01850 at 411.593 kb on + strand, within DDA3937_RS01850 at 411.594 kb on - strand, within DDA3937_RS01850 at 411.594 kb on - strand, within DDA3937_RS01850 at 411.594 kb on - strand, within DDA3937_RS01850 at 411.657 kb on + strand, within DDA3937_RS01850 at 411.658 kb on - strand, within DDA3937_RS01850 at 411.711 kb on + strand, within DDA3937_RS01850 at 411.788 kb on + strand, within DDA3937_RS01850 at 411.788 kb on + strand, within DDA3937_RS01850 at 411.788 kb on + strand, within DDA3937_RS01850 at 411.788 kb on + strand, within DDA3937_RS01850 at 411.789 kb on - strand, within DDA3937_RS01850 at 411.789 kb on - strand, within DDA3937_RS01850 at 411.789 kb on - strand, within DDA3937_RS01850 at 411.789 kb on - strand, within DDA3937_RS01850 at 411.789 kb on - strand, within DDA3937_RS01850 at 411.789 kb on - strand, within DDA3937_RS01850 at 411.789 kb on - strand, within DDA3937_RS01850 at 411.878 kb on + strand, within DDA3937_RS01850 at 411.878 kb on + strand, within DDA3937_RS01850 at 411.879 kb on - strand, within DDA3937_RS01850 at 411.879 kb on - strand, within DDA3937_RS01850 at 411.879 kb on - strand, within DDA3937_RS01850 at 412.035 kb on + strand, within DDA3937_RS01850 at 412.035 kb on + strand, within DDA3937_RS01850 at 412.035 kb on + strand, within DDA3937_RS01850 at 412.035 kb on + strand, within DDA3937_RS01850 at 412.035 kb on + strand, within DDA3937_RS01850 at 412.069 kb on + strand, within DDA3937_RS01850 at 412.305 kb on + strand at 412.336 kb on - strand at 412.336 kb on - strand at 412.367 kb on + strand at 412.367 kb on + strand at 412.378 kb on + strand at 412.459 kb on + strand at 412.460 kb on - strand at 412.579 kb on - strand at 412.679 kb on - strand, within DDA3937_RS01855 at 412.698 kb on + strand, within DDA3937_RS01855 at 413.072 kb on + strand, within DDA3937_RS01855 at 413.073 kb on - strand, within DDA3937_RS01855 at 413.257 kb on + strand, within DDA3937_RS01855 at 413.257 kb on + strand, within DDA3937_RS01855 at 413.258 kb on - strand, within DDA3937_RS01855 at 413.433 kb on + strand at 413.486 kb on + strand at 413.500 kb on + strand at 413.500 kb on + strand at 413.500 kb on + strand at 413.500 kb on + strand at 413.500 kb on + strand at 413.500 kb on + strand at 413.501 kb on - strand at 413.501 kb on - strand at 413.501 kb on - strand at 413.501 kb on - strand at 413.501 kb on - strand at 413.504 kb on + strand at 413.505 kb on - strand at 413.505 kb on - strand at 413.505 kb on - strand at 413.521 kb on + strand at 413.525 kb on + strand at 413.525 kb on + strand at 413.662 kb on + strand at 413.663 kb on - strand at 413.710 kb on + strand at 413.715 kb on - strand at 413.727 kb on + strand at 413.734 kb on + strand at 413.735 kb on - strand at 413.749 kb on - strand at 413.751 kb on + strand at 413.754 kb on - strand at 413.754 kb on - strand at 413.754 kb on - strand at 413.757 kb on - strand at 413.757 kb on - strand at 413.757 kb on - strand at 413.757 kb on - strand at 413.762 kb on + strand at 413.763 kb on - strand at 413.763 kb on - strand at 413.765 kb on + strand at 413.765 kb on + strand at 413.766 kb on - strand at 413.768 kb on - strand at 413.772 kb on - strand at 413.784 kb on + strand at 413.785 kb on - strand at 413.809 kb on + strand at 413.817 kb on - strand at 413.870 kb on + strand at 413.875 kb on + strand at 413.875 kb on + strand at 413.876 kb on - strand at 413.876 kb on - strand at 413.905 kb on - strand at 413.950 kb on + strand at 413.951 kb on - strand at 414.008 kb on - strand at 414.008 kb on - strand at 414.105 kb on - strand at 414.118 kb on + strand at 414.118 kb on + strand at 414.119 kb on - strand at 414.242 kb on + strand at 414.289 kb on + strand at 414.290 kb on - strand at 414.290 kb on - strand at 414.290 kb on - strand at 414.290 kb on - strand at 414.290 kb on - strand at 414.333 kb on + strand at 414.334 kb on - strand at 414.391 kb on + strand at 414.391 kb on + strand at 414.391 kb on + strand at 414.391 kb on + strand at 414.391 kb on + strand at 414.391 kb on + strand at 414.392 kb on - strand at 414.392 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 411,593 + DDA3937_RS01850 0.51 +0.1 411,593 + DDA3937_RS01850 0.51 +0.2 411,593 + DDA3937_RS01850 0.51 -1.0 411,594 - DDA3937_RS01850 0.51 +0.1 411,594 - DDA3937_RS01850 0.51 +0.0 411,594 - DDA3937_RS01850 0.51 +0.3 411,657 + DDA3937_RS01850 0.55 -0.3 411,658 - DDA3937_RS01850 0.55 +0.0 411,711 + DDA3937_RS01850 0.58 +0.7 411,788 + DDA3937_RS01850 0.63 -0.6 411,788 + DDA3937_RS01850 0.63 +1.4 411,788 + DDA3937_RS01850 0.63 -0.8 411,788 + DDA3937_RS01850 0.63 -1.1 411,789 - DDA3937_RS01850 0.63 -0.2 411,789 - DDA3937_RS01850 0.63 +1.2 411,789 - DDA3937_RS01850 0.63 +0.4 411,789 - DDA3937_RS01850 0.63 -0.2 411,789 - DDA3937_RS01850 0.63 -0.4 411,789 - DDA3937_RS01850 0.63 -0.1 411,789 - DDA3937_RS01850 0.63 -0.8 411,878 + DDA3937_RS01850 0.69 -0.2 411,878 + DDA3937_RS01850 0.69 -0.7 411,879 - DDA3937_RS01850 0.69 +0.0 411,879 - DDA3937_RS01850 0.69 -0.1 411,879 - DDA3937_RS01850 0.69 -0.7 412,035 + DDA3937_RS01850 0.78 +0.0 412,035 + DDA3937_RS01850 0.78 +0.0 412,035 + DDA3937_RS01850 0.78 -2.0 412,035 + DDA3937_RS01850 0.78 -1.3 412,035 + DDA3937_RS01850 0.78 -0.5 412,069 + DDA3937_RS01850 0.81 -0.1 412,305 + -1.2 412,336 - +1.2 412,336 - +0.6 412,367 + +0.1 412,367 + -2.3 412,378 + -0.5 412,459 + -0.5 412,460 - +0.2 412,579 - -0.4 412,679 - DDA3937_RS01855 0.11 -2.7 412,698 + DDA3937_RS01855 0.13 +0.7 413,072 + DDA3937_RS01855 0.54 -0.8 413,073 - DDA3937_RS01855 0.54 -0.3 413,257 + DDA3937_RS01855 0.74 -0.8 413,257 + DDA3937_RS01855 0.74 +0.8 413,258 - DDA3937_RS01855 0.74 -1.7 413,433 + -0.5 413,486 + -2.1 413,500 + -0.5 413,500 + -1.1 413,500 + -0.0 413,500 + +0.6 413,500 + -0.4 413,500 + -1.1 413,501 - -0.0 413,501 - +0.3 413,501 - +0.7 413,501 - +0.8 413,501 - +1.6 413,504 + -1.0 413,505 - -0.3 413,505 - +0.2 413,505 - -1.6 413,521 + +0.8 413,525 + +0.7 413,525 + +0.2 413,662 + -2.1 413,663 - -0.5 413,710 + +0.1 413,715 - -0.1 413,727 + -0.6 413,734 + +0.1 413,735 - -0.1 413,749 - -0.3 413,751 + -0.6 413,754 - -0.1 413,754 - -0.2 413,754 - -0.4 413,757 - -0.7 413,757 - +1.5 413,757 - -0.0 413,757 - -0.2 413,762 + -0.4 413,763 - -0.5 413,763 - -1.8 413,765 + +0.9 413,765 + +0.0 413,766 - -0.6 413,768 - -1.8 413,772 - +0.7 413,784 + +0.3 413,785 - +1.5 413,809 + +0.2 413,817 - -1.2 413,870 + -0.2 413,875 + -0.1 413,875 + +0.1 413,876 - +0.7 413,876 - +0.4 413,905 - -0.2 413,950 + +1.2 413,951 - -0.0 414,008 - -0.5 414,008 - -0.2 414,105 - +0.3 414,118 + -1.0 414,118 + +0.0 414,119 - +1.0 414,242 + -0.3 414,289 + -0.2 414,290 - -2.0 414,290 - +0.5 414,290 - -1.0 414,290 - -0.8 414,290 - -1.2 414,333 + +0.2 414,334 - -0.0 414,391 + +2.5 414,391 + -0.5 414,391 + -1.4 414,391 + +0.4 414,391 + -0.1 414,391 + +0.9 414,392 - -0.5 414,392 - -0.6
Or see this region's nucleotide sequence