Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS01640 and DDA3937_RS01645 are separated by 230 nucleotides DDA3937_RS01645 and DDA3937_RS01650 are separated by 4 nucleotides DDA3937_RS01650 and DDA3937_RS01655 are separated by 132 nucleotides
DDA3937_RS01640: DDA3937_RS01640 - multidrug effflux MFS transporter, at 359,790 to 361,043
_RS01640
DDA3937_RS01645: DDA3937_RS01645 - stringent starvation protein A, at 361,274 to 361,915
_RS01645
DDA3937_RS01650: DDA3937_RS01650 - ClpXP protease specificity-enhancing factor, at 361,920 to 362,417
_RS01650
DDA3937_RS01655: DDA3937_RS01655 - GFA family protein, at 362,550 to 362,960
_RS01655
Position (kb) 361
362 Strain fitness (log2 ratio) -2
-1
0
1
2 at 360.349 kb on + strand, within DDA3937_RS01640 at 360.349 kb on + strand, within DDA3937_RS01640 at 360.435 kb on + strand, within DDA3937_RS01640 at 360.436 kb on - strand, within DDA3937_RS01640 at 360.436 kb on - strand, within DDA3937_RS01640 at 360.436 kb on - strand, within DDA3937_RS01640 at 360.436 kb on - strand, within DDA3937_RS01640 at 360.471 kb on + strand, within DDA3937_RS01640 at 360.471 kb on + strand, within DDA3937_RS01640 at 360.471 kb on + strand, within DDA3937_RS01640 at 360.472 kb on - strand, within DDA3937_RS01640 at 360.472 kb on - strand, within DDA3937_RS01640 at 360.472 kb on - strand, within DDA3937_RS01640 at 360.472 kb on - strand, within DDA3937_RS01640 at 360.472 kb on - strand, within DDA3937_RS01640 at 360.473 kb on + strand, within DDA3937_RS01640 at 360.473 kb on + strand, within DDA3937_RS01640 at 360.473 kb on + strand, within DDA3937_RS01640 at 360.473 kb on + strand, within DDA3937_RS01640 at 360.474 kb on - strand, within DDA3937_RS01640 at 360.474 kb on - strand, within DDA3937_RS01640 at 360.513 kb on + strand, within DDA3937_RS01640 at 360.513 kb on + strand, within DDA3937_RS01640 at 360.513 kb on + strand, within DDA3937_RS01640 at 360.514 kb on - strand, within DDA3937_RS01640 at 360.514 kb on - strand, within DDA3937_RS01640 at 360.514 kb on - strand, within DDA3937_RS01640 at 360.514 kb on - strand, within DDA3937_RS01640 at 360.514 kb on - strand, within DDA3937_RS01640 at 360.572 kb on + strand, within DDA3937_RS01640 at 360.573 kb on - strand, within DDA3937_RS01640 at 360.573 kb on - strand, within DDA3937_RS01640 at 360.689 kb on + strand, within DDA3937_RS01640 at 360.689 kb on + strand, within DDA3937_RS01640 at 360.689 kb on + strand, within DDA3937_RS01640 at 360.689 kb on + strand, within DDA3937_RS01640 at 360.689 kb on + strand, within DDA3937_RS01640 at 360.690 kb on - strand, within DDA3937_RS01640 at 360.690 kb on - strand, within DDA3937_RS01640 at 360.750 kb on + strand, within DDA3937_RS01640 at 360.825 kb on + strand, within DDA3937_RS01640 at 360.825 kb on + strand, within DDA3937_RS01640 at 360.826 kb on - strand, within DDA3937_RS01640 at 360.826 kb on - strand, within DDA3937_RS01640 at 360.876 kb on + strand, within DDA3937_RS01640 at 360.876 kb on + strand, within DDA3937_RS01640 at 360.876 kb on + strand, within DDA3937_RS01640 at 360.876 kb on + strand, within DDA3937_RS01640 at 360.877 kb on - strand, within DDA3937_RS01640 at 360.900 kb on + strand at 360.901 kb on - strand, within DDA3937_RS01640 at 360.916 kb on + strand, within DDA3937_RS01640 at 360.916 kb on + strand, within DDA3937_RS01640 at 360.917 kb on - strand, within DDA3937_RS01640 at 360.917 kb on - strand, within DDA3937_RS01640 at 360.952 kb on + strand at 360.952 kb on + strand at 360.952 kb on + strand at 360.952 kb on + strand at 360.953 kb on - strand at 360.953 kb on - strand at 360.953 kb on - strand at 360.976 kb on + strand at 360.976 kb on + strand at 360.976 kb on + strand at 360.977 kb on - strand at 360.977 kb on - strand at 360.984 kb on - strand at 360.984 kb on - strand at 360.984 kb on - strand at 360.998 kb on + strand at 361.052 kb on - strand at 361.052 kb on - strand at 361.084 kb on + strand at 361.113 kb on + strand at 361.113 kb on + strand at 361.113 kb on + strand at 361.131 kb on + strand at 361.131 kb on + strand at 361.131 kb on + strand at 361.132 kb on - strand at 361.481 kb on + strand, within DDA3937_RS01645 at 361.481 kb on + strand, within DDA3937_RS01645 at 361.481 kb on + strand, within DDA3937_RS01645 at 361.481 kb on + strand, within DDA3937_RS01645 at 361.481 kb on + strand, within DDA3937_RS01645 at 361.481 kb on + strand, within DDA3937_RS01645 at 361.482 kb on - strand, within DDA3937_RS01645 at 361.492 kb on + strand, within DDA3937_RS01645 at 361.505 kb on + strand, within DDA3937_RS01645 at 361.636 kb on + strand, within DDA3937_RS01645 at 361.637 kb on - strand, within DDA3937_RS01645 at 361.637 kb on - strand, within DDA3937_RS01645 at 361.751 kb on + strand, within DDA3937_RS01645 at 361.752 kb on - strand, within DDA3937_RS01645 at 361.829 kb on + strand, within DDA3937_RS01645 at 361.830 kb on - strand, within DDA3937_RS01645 at 361.831 kb on + strand, within DDA3937_RS01645 at 361.831 kb on + strand, within DDA3937_RS01645 at 361.832 kb on - strand, within DDA3937_RS01645 at 361.971 kb on + strand, within DDA3937_RS01650 at 361.971 kb on + strand, within DDA3937_RS01650 at 361.971 kb on + strand, within DDA3937_RS01650 at 362.081 kb on + strand, within DDA3937_RS01650 at 362.081 kb on + strand, within DDA3937_RS01650 at 362.081 kb on + strand, within DDA3937_RS01650 at 362.113 kb on + strand, within DDA3937_RS01650 at 362.113 kb on + strand, within DDA3937_RS01650 at 362.114 kb on - strand, within DDA3937_RS01650 at 362.114 kb on - strand, within DDA3937_RS01650 at 362.114 kb on - strand, within DDA3937_RS01650 at 362.114 kb on - strand, within DDA3937_RS01650 at 362.199 kb on + strand, within DDA3937_RS01650 at 362.199 kb on + strand, within DDA3937_RS01650 at 362.199 kb on + strand, within DDA3937_RS01650 at 362.199 kb on + strand, within DDA3937_RS01650 at 362.199 kb on + strand, within DDA3937_RS01650 at 362.415 kb on + strand at 362.443 kb on - strand at 362.487 kb on - strand at 362.576 kb on - strand at 362.576 kb on - strand at 362.587 kb on + strand at 362.612 kb on + strand, within DDA3937_RS01655 at 362.612 kb on + strand, within DDA3937_RS01655 at 362.612 kb on + strand, within DDA3937_RS01655 at 362.612 kb on + strand, within DDA3937_RS01655 at 362.612 kb on + strand, within DDA3937_RS01655 at 362.612 kb on + strand, within DDA3937_RS01655 at 362.612 kb on + strand, within DDA3937_RS01655 at 362.612 kb on + strand, within DDA3937_RS01655 at 362.612 kb on + strand, within DDA3937_RS01655 at 362.612 kb on + strand, within DDA3937_RS01655 at 362.613 kb on - strand, within DDA3937_RS01655 at 362.613 kb on - strand, within DDA3937_RS01655 at 362.613 kb on - strand, within DDA3937_RS01655 at 362.613 kb on - strand, within DDA3937_RS01655 at 362.613 kb on - strand, within DDA3937_RS01655 at 362.613 kb on - strand, within DDA3937_RS01655 at 362.613 kb on - strand, within DDA3937_RS01655 at 362.613 kb on - strand, within DDA3937_RS01655 at 362.613 kb on - strand, within DDA3937_RS01655 at 362.613 kb on - strand, within DDA3937_RS01655 at 362.613 kb on - strand, within DDA3937_RS01655 at 362.625 kb on + strand, within DDA3937_RS01655 at 362.625 kb on + strand, within DDA3937_RS01655 at 362.625 kb on + strand, within DDA3937_RS01655 at 362.625 kb on + strand, within DDA3937_RS01655 at 362.625 kb on + strand, within DDA3937_RS01655 at 362.625 kb on + strand, within DDA3937_RS01655 at 362.625 kb on + strand, within DDA3937_RS01655 at 362.626 kb on - strand, within DDA3937_RS01655 at 362.626 kb on - strand, within DDA3937_RS01655 at 362.626 kb on - strand, within DDA3937_RS01655 at 362.626 kb on - strand, within DDA3937_RS01655 at 362.626 kb on - strand, within DDA3937_RS01655 at 362.626 kb on - strand, within DDA3937_RS01655 at 362.626 kb on - strand, within DDA3937_RS01655 at 362.626 kb on - strand, within DDA3937_RS01655 at 362.643 kb on - strand, within DDA3937_RS01655 at 362.643 kb on - strand, within DDA3937_RS01655 at 362.643 kb on - strand, within DDA3937_RS01655 at 362.643 kb on - strand, within DDA3937_RS01655 at 362.814 kb on + strand, within DDA3937_RS01655 at 362.814 kb on + strand, within DDA3937_RS01655 at 362.871 kb on + strand, within DDA3937_RS01655 at 362.871 kb on + strand, within DDA3937_RS01655 at 362.872 kb on - strand, within DDA3937_RS01655 at 362.872 kb on - strand, within DDA3937_RS01655 at 362.872 kb on - strand, within DDA3937_RS01655 at 362.872 kb on - strand, within DDA3937_RS01655 at 362.879 kb on + strand, within DDA3937_RS01655 at 362.882 kb on + strand, within DDA3937_RS01655 at 362.882 kb on + strand, within DDA3937_RS01655 at 362.883 kb on - strand, within DDA3937_RS01655 at 362.892 kb on + strand, within DDA3937_RS01655 at 362.892 kb on + strand, within DDA3937_RS01655 at 362.895 kb on + strand, within DDA3937_RS01655 at 362.896 kb on - strand, within DDA3937_RS01655 at 362.896 kb on - strand, within DDA3937_RS01655 at 362.905 kb on + strand, within DDA3937_RS01655 at 362.906 kb on - strand, within DDA3937_RS01655
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 360,349 + DDA3937_RS01640 0.45 +0.2 360,349 + DDA3937_RS01640 0.45 +0.3 360,435 + DDA3937_RS01640 0.51 -0.1 360,436 - DDA3937_RS01640 0.52 -2.1 360,436 - DDA3937_RS01640 0.52 -1.5 360,436 - DDA3937_RS01640 0.52 +0.3 360,436 - DDA3937_RS01640 0.52 +2.6 360,471 + DDA3937_RS01640 0.54 -0.2 360,471 + DDA3937_RS01640 0.54 -1.2 360,471 + DDA3937_RS01640 0.54 -0.1 360,472 - DDA3937_RS01640 0.54 -0.2 360,472 - DDA3937_RS01640 0.54 -0.6 360,472 - DDA3937_RS01640 0.54 -0.2 360,472 - DDA3937_RS01640 0.54 +0.5 360,472 - DDA3937_RS01640 0.54 -0.2 360,473 + DDA3937_RS01640 0.54 +0.9 360,473 + DDA3937_RS01640 0.54 -1.5 360,473 + DDA3937_RS01640 0.54 +0.2 360,473 + DDA3937_RS01640 0.54 +0.0 360,474 - DDA3937_RS01640 0.55 -0.5 360,474 - DDA3937_RS01640 0.55 +0.6 360,513 + DDA3937_RS01640 0.58 -1.1 360,513 + DDA3937_RS01640 0.58 -0.1 360,513 + DDA3937_RS01640 0.58 -0.9 360,514 - DDA3937_RS01640 0.58 +0.3 360,514 - DDA3937_RS01640 0.58 +0.2 360,514 - DDA3937_RS01640 0.58 +0.3 360,514 - DDA3937_RS01640 0.58 +0.3 360,514 - DDA3937_RS01640 0.58 -2.3 360,572 + DDA3937_RS01640 0.62 -0.6 360,573 - DDA3937_RS01640 0.62 -1.3 360,573 - DDA3937_RS01640 0.62 +1.3 360,689 + DDA3937_RS01640 0.72 -0.5 360,689 + DDA3937_RS01640 0.72 -0.4 360,689 + DDA3937_RS01640 0.72 -0.1 360,689 + DDA3937_RS01640 0.72 +0.7 360,689 + DDA3937_RS01640 0.72 +1.1 360,690 - DDA3937_RS01640 0.72 -0.2 360,690 - DDA3937_RS01640 0.72 -0.3 360,750 + DDA3937_RS01640 0.77 -1.3 360,825 + DDA3937_RS01640 0.83 -0.4 360,825 + DDA3937_RS01640 0.83 +1.3 360,826 - DDA3937_RS01640 0.83 -0.5 360,826 - DDA3937_RS01640 0.83 -0.4 360,876 + DDA3937_RS01640 0.87 +1.9 360,876 + DDA3937_RS01640 0.87 +1.9 360,876 + DDA3937_RS01640 0.87 -0.5 360,876 + DDA3937_RS01640 0.87 -0.3 360,877 - DDA3937_RS01640 0.87 -0.6 360,900 + -0.5 360,901 - DDA3937_RS01640 0.89 -2.3 360,916 + DDA3937_RS01640 0.90 -0.1 360,916 + DDA3937_RS01640 0.90 -0.5 360,917 - DDA3937_RS01640 0.90 +0.3 360,917 - DDA3937_RS01640 0.90 -1.5 360,952 + -0.1 360,952 + +0.5 360,952 + +0.6 360,952 + +0.1 360,953 - -0.5 360,953 - -1.1 360,953 - +0.0 360,976 + -0.9 360,976 + -1.2 360,976 + +0.3 360,977 - +1.3 360,977 - +0.7 360,984 - -0.7 360,984 - +0.9 360,984 - -0.7 360,998 + +0.9 361,052 - -1.5 361,052 - -0.1 361,084 + +0.4 361,113 + -0.2 361,113 + +0.6 361,113 + -0.3 361,131 + +0.3 361,131 + -0.8 361,131 + -1.0 361,132 - -0.9 361,481 + DDA3937_RS01645 0.32 +1.6 361,481 + DDA3937_RS01645 0.32 -0.1 361,481 + DDA3937_RS01645 0.32 -1.9 361,481 + DDA3937_RS01645 0.32 +0.1 361,481 + DDA3937_RS01645 0.32 -0.2 361,481 + DDA3937_RS01645 0.32 -0.7 361,482 - DDA3937_RS01645 0.32 +0.8 361,492 + DDA3937_RS01645 0.34 +0.3 361,505 + DDA3937_RS01645 0.36 -0.7 361,636 + DDA3937_RS01645 0.56 -1.3 361,637 - DDA3937_RS01645 0.57 -0.4 361,637 - DDA3937_RS01645 0.57 -0.6 361,751 + DDA3937_RS01645 0.74 -1.2 361,752 - DDA3937_RS01645 0.74 -2.2 361,829 + DDA3937_RS01645 0.86 +1.3 361,830 - DDA3937_RS01645 0.87 -0.8 361,831 + DDA3937_RS01645 0.87 -1.7 361,831 + DDA3937_RS01645 0.87 -2.1 361,832 - DDA3937_RS01645 0.87 -0.7 361,971 + DDA3937_RS01650 0.10 -0.3 361,971 + DDA3937_RS01650 0.10 -0.4 361,971 + DDA3937_RS01650 0.10 +0.6 362,081 + DDA3937_RS01650 0.32 -1.0 362,081 + DDA3937_RS01650 0.32 +0.8 362,081 + DDA3937_RS01650 0.32 +2.4 362,113 + DDA3937_RS01650 0.39 +0.4 362,113 + DDA3937_RS01650 0.39 -1.6 362,114 - DDA3937_RS01650 0.39 -0.7 362,114 - DDA3937_RS01650 0.39 -0.9 362,114 - DDA3937_RS01650 0.39 -0.1 362,114 - DDA3937_RS01650 0.39 -1.4 362,199 + DDA3937_RS01650 0.56 -0.6 362,199 + DDA3937_RS01650 0.56 -0.3 362,199 + DDA3937_RS01650 0.56 -0.3 362,199 + DDA3937_RS01650 0.56 -1.2 362,199 + DDA3937_RS01650 0.56 -1.5 362,415 + -1.3 362,443 - +0.5 362,487 - +0.1 362,576 - -0.3 362,576 - +1.7 362,587 + +0.4 362,612 + DDA3937_RS01655 0.15 +0.0 362,612 + DDA3937_RS01655 0.15 -0.2 362,612 + DDA3937_RS01655 0.15 +0.7 362,612 + DDA3937_RS01655 0.15 -0.2 362,612 + DDA3937_RS01655 0.15 -0.0 362,612 + DDA3937_RS01655 0.15 -0.6 362,612 + DDA3937_RS01655 0.15 -0.3 362,612 + DDA3937_RS01655 0.15 -0.2 362,612 + DDA3937_RS01655 0.15 +0.4 362,612 + DDA3937_RS01655 0.15 -0.6 362,613 - DDA3937_RS01655 0.15 +2.2 362,613 - DDA3937_RS01655 0.15 -0.7 362,613 - DDA3937_RS01655 0.15 +0.8 362,613 - DDA3937_RS01655 0.15 -0.6 362,613 - DDA3937_RS01655 0.15 -0.9 362,613 - DDA3937_RS01655 0.15 -0.9 362,613 - DDA3937_RS01655 0.15 -0.0 362,613 - DDA3937_RS01655 0.15 +0.7 362,613 - DDA3937_RS01655 0.15 -0.4 362,613 - DDA3937_RS01655 0.15 -1.1 362,613 - DDA3937_RS01655 0.15 -1.7 362,625 + DDA3937_RS01655 0.18 +0.8 362,625 + DDA3937_RS01655 0.18 +0.5 362,625 + DDA3937_RS01655 0.18 -0.2 362,625 + DDA3937_RS01655 0.18 -1.1 362,625 + DDA3937_RS01655 0.18 -0.4 362,625 + DDA3937_RS01655 0.18 +1.3 362,625 + DDA3937_RS01655 0.18 -0.4 362,626 - DDA3937_RS01655 0.18 -0.5 362,626 - DDA3937_RS01655 0.18 -0.1 362,626 - DDA3937_RS01655 0.18 +0.3 362,626 - DDA3937_RS01655 0.18 -1.4 362,626 - DDA3937_RS01655 0.18 -0.1 362,626 - DDA3937_RS01655 0.18 +0.5 362,626 - DDA3937_RS01655 0.18 +1.9 362,626 - DDA3937_RS01655 0.18 +1.3 362,643 - DDA3937_RS01655 0.23 -1.2 362,643 - DDA3937_RS01655 0.23 -0.4 362,643 - DDA3937_RS01655 0.23 -0.5 362,643 - DDA3937_RS01655 0.23 +1.7 362,814 + DDA3937_RS01655 0.64 -1.1 362,814 + DDA3937_RS01655 0.64 +1.7 362,871 + DDA3937_RS01655 0.78 +0.1 362,871 + DDA3937_RS01655 0.78 +1.0 362,872 - DDA3937_RS01655 0.78 +0.3 362,872 - DDA3937_RS01655 0.78 -0.8 362,872 - DDA3937_RS01655 0.78 +0.6 362,872 - DDA3937_RS01655 0.78 +0.1 362,879 + DDA3937_RS01655 0.80 -0.3 362,882 + DDA3937_RS01655 0.81 -1.2 362,882 + DDA3937_RS01655 0.81 +0.8 362,883 - DDA3937_RS01655 0.81 -1.3 362,892 + DDA3937_RS01655 0.83 -1.3 362,892 + DDA3937_RS01655 0.83 +0.6 362,895 + DDA3937_RS01655 0.84 -0.1 362,896 - DDA3937_RS01655 0.84 -0.7 362,896 - DDA3937_RS01655 0.84 -0.4 362,905 + DDA3937_RS01655 0.86 -2.5 362,906 - DDA3937_RS01655 0.87 -0.5
Or see this region's nucleotide sequence