Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS01570

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS01565 and DDA3937_RS01570 are separated by 3 nucleotidesDDA3937_RS01570 and DDA3937_RS01575 are separated by 4 nucleotidesDDA3937_RS01575 and DDA3937_RS01580 are separated by 17 nucleotides DDA3937_RS01565: DDA3937_RS01565 - phospholipid ABC transporter ATP-binding protein MlaF, at 347,162 to 347,971 _RS01565 DDA3937_RS01570: DDA3937_RS01570 - lipid asymmetry maintenance ABC transporter permease subunit MlaE, at 347,975 to 348,757 _RS01570 DDA3937_RS01575: DDA3937_RS01575 - outer membrane lipid asymmetry maintenance protein MlaD, at 348,762 to 349,385 _RS01575 DDA3937_RS01580: DDA3937_RS01580 - phospholipid-binding protein MlaC, at 349,403 to 350,056 _RS01580 Position (kb) 347 348 349Strain fitness (log2 ratio) -2 -1 0 1 2at 346.981 kb on + strandat 347.009 kb on - strandat 347.053 kb on + strandat 347.161 kb on + strandat 347.294 kb on - strand, within DDA3937_RS01565at 347.368 kb on + strand, within DDA3937_RS01565at 347.369 kb on - strand, within DDA3937_RS01565at 347.369 kb on - strand, within DDA3937_RS01565at 347.396 kb on + strand, within DDA3937_RS01565at 347.397 kb on - strand, within DDA3937_RS01565at 347.397 kb on - strand, within DDA3937_RS01565at 347.407 kb on + strand, within DDA3937_RS01565at 347.446 kb on + strand, within DDA3937_RS01565at 347.494 kb on + strand, within DDA3937_RS01565at 347.494 kb on + strand, within DDA3937_RS01565at 347.494 kb on + strand, within DDA3937_RS01565at 347.494 kb on + strand, within DDA3937_RS01565at 347.495 kb on - strand, within DDA3937_RS01565at 347.495 kb on - strand, within DDA3937_RS01565at 347.495 kb on - strand, within DDA3937_RS01565at 347.589 kb on + strand, within DDA3937_RS01565at 347.589 kb on + strand, within DDA3937_RS01565at 347.589 kb on + strand, within DDA3937_RS01565at 347.590 kb on - strand, within DDA3937_RS01565at 347.795 kb on + strand, within DDA3937_RS01565at 347.795 kb on + strand, within DDA3937_RS01565at 347.795 kb on + strand, within DDA3937_RS01565at 347.796 kb on - strand, within DDA3937_RS01565at 347.796 kb on - strand, within DDA3937_RS01565at 347.796 kb on - strand, within DDA3937_RS01565at 347.801 kb on + strand, within DDA3937_RS01565at 347.801 kb on + strand, within DDA3937_RS01565at 347.801 kb on + strand, within DDA3937_RS01565at 347.801 kb on + strand, within DDA3937_RS01565at 347.801 kb on + strand, within DDA3937_RS01565at 347.801 kb on + strand, within DDA3937_RS01565at 347.801 kb on + strand, within DDA3937_RS01565at 347.801 kb on + strand, within DDA3937_RS01565at 347.802 kb on - strand, within DDA3937_RS01565at 347.802 kb on - strand, within DDA3937_RS01565at 347.802 kb on - strand, within DDA3937_RS01565at 347.802 kb on - strand, within DDA3937_RS01565at 347.802 kb on - strand, within DDA3937_RS01565at 347.802 kb on - strand, within DDA3937_RS01565at 347.802 kb on - strand, within DDA3937_RS01565at 347.802 kb on - strand, within DDA3937_RS01565at 347.965 kb on + strandat 347.969 kb on + strandat 347.970 kb on - strandat 347.980 kb on - strandat 347.980 kb on - strandat 347.980 kb on - strandat 347.983 kb on - strandat 347.983 kb on - strandat 348.054 kb on + strand, within DDA3937_RS01570at 348.054 kb on + strand, within DDA3937_RS01570at 348.055 kb on - strand, within DDA3937_RS01570at 348.119 kb on + strand, within DDA3937_RS01570at 348.120 kb on - strand, within DDA3937_RS01570at 348.120 kb on - strand, within DDA3937_RS01570at 348.120 kb on - strand, within DDA3937_RS01570at 348.120 kb on - strand, within DDA3937_RS01570at 348.121 kb on + strand, within DDA3937_RS01570at 348.122 kb on - strand, within DDA3937_RS01570at 348.166 kb on - strand, within DDA3937_RS01570at 348.166 kb on - strand, within DDA3937_RS01570at 348.166 kb on - strand, within DDA3937_RS01570at 348.175 kb on + strand, within DDA3937_RS01570at 348.211 kb on + strand, within DDA3937_RS01570at 348.211 kb on + strand, within DDA3937_RS01570at 348.212 kb on - strand, within DDA3937_RS01570at 348.212 kb on - strand, within DDA3937_RS01570at 348.212 kb on - strand, within DDA3937_RS01570at 348.215 kb on + strand, within DDA3937_RS01570at 348.215 kb on + strand, within DDA3937_RS01570at 348.215 kb on + strand, within DDA3937_RS01570at 348.215 kb on + strand, within DDA3937_RS01570at 348.215 kb on + strand, within DDA3937_RS01570at 348.216 kb on - strand, within DDA3937_RS01570at 348.216 kb on - strand, within DDA3937_RS01570at 348.368 kb on - strand, within DDA3937_RS01570at 348.574 kb on + strand, within DDA3937_RS01570at 348.574 kb on + strand, within DDA3937_RS01570at 348.575 kb on - strand, within DDA3937_RS01570at 348.575 kb on - strand, within DDA3937_RS01570at 348.638 kb on + strand, within DDA3937_RS01570at 348.796 kb on + strandat 348.796 kb on + strandat 348.797 kb on - strandat 348.823 kb on + strandat 348.833 kb on - strand, within DDA3937_RS01575at 348.879 kb on + strand, within DDA3937_RS01575at 348.880 kb on - strand, within DDA3937_RS01575at 348.880 kb on - strand, within DDA3937_RS01575at 348.905 kb on + strand, within DDA3937_RS01575at 348.917 kb on + strand, within DDA3937_RS01575at 348.917 kb on + strand, within DDA3937_RS01575at 348.972 kb on - strand, within DDA3937_RS01575at 348.993 kb on + strand, within DDA3937_RS01575at 348.993 kb on + strand, within DDA3937_RS01575at 348.993 kb on + strand, within DDA3937_RS01575at 348.994 kb on - strand, within DDA3937_RS01575at 349.017 kb on - strand, within DDA3937_RS01575at 349.029 kb on + strand, within DDA3937_RS01575at 349.092 kb on + strand, within DDA3937_RS01575at 349.092 kb on + strand, within DDA3937_RS01575at 349.092 kb on + strand, within DDA3937_RS01575at 349.213 kb on + strand, within DDA3937_RS01575at 349.213 kb on + strand, within DDA3937_RS01575at 349.214 kb on - strand, within DDA3937_RS01575at 349.214 kb on - strand, within DDA3937_RS01575at 349.215 kb on + strand, within DDA3937_RS01575at 349.215 kb on + strand, within DDA3937_RS01575at 349.215 kb on + strand, within DDA3937_RS01575at 349.216 kb on - strand, within DDA3937_RS01575at 349.216 kb on - strand, within DDA3937_RS01575at 349.216 kb on - strand, within DDA3937_RS01575at 349.217 kb on + strand, within DDA3937_RS01575at 349.217 kb on + strand, within DDA3937_RS01575at 349.217 kb on + strand, within DDA3937_RS01575at 349.217 kb on + strand, within DDA3937_RS01575at 349.217 kb on + strand, within DDA3937_RS01575at 349.217 kb on + strand, within DDA3937_RS01575at 349.217 kb on + strand, within DDA3937_RS01575at 349.218 kb on - strand, within DDA3937_RS01575at 349.218 kb on - strand, within DDA3937_RS01575at 349.218 kb on - strand, within DDA3937_RS01575at 349.218 kb on - strand, within DDA3937_RS01575at 349.218 kb on - strand, within DDA3937_RS01575at 349.218 kb on - strand, within DDA3937_RS01575at 349.218 kb on - strand, within DDA3937_RS01575at 349.218 kb on - strand, within DDA3937_RS01575at 349.235 kb on + strand, within DDA3937_RS01575at 349.256 kb on + strand, within DDA3937_RS01575at 349.257 kb on - strand, within DDA3937_RS01575at 349.286 kb on + strand, within DDA3937_RS01575at 349.287 kb on - strand, within DDA3937_RS01575at 349.307 kb on + strand, within DDA3937_RS01575at 349.308 kb on - strand, within DDA3937_RS01575at 349.383 kb on + strandat 349.417 kb on - strandat 349.492 kb on + strand, within DDA3937_RS01580at 349.493 kb on - strand, within DDA3937_RS01580at 349.499 kb on + strand, within DDA3937_RS01580at 349.543 kb on + strand, within DDA3937_RS01580at 349.544 kb on - strand, within DDA3937_RS01580at 349.544 kb on - strand, within DDA3937_RS01580at 349.564 kb on + strand, within DDA3937_RS01580at 349.564 kb on + strand, within DDA3937_RS01580at 349.565 kb on - strand, within DDA3937_RS01580at 349.580 kb on + strand, within DDA3937_RS01580at 349.580 kb on + strand, within DDA3937_RS01580at 349.580 kb on + strand, within DDA3937_RS01580at 349.581 kb on - strand, within DDA3937_RS01580at 349.581 kb on - strand, within DDA3937_RS01580at 349.581 kb on - strand, within DDA3937_RS01580at 349.616 kb on + strand, within DDA3937_RS01580at 349.616 kb on + strand, within DDA3937_RS01580at 349.616 kb on + strand, within DDA3937_RS01580at 349.617 kb on - strand, within DDA3937_RS01580at 349.617 kb on - strand, within DDA3937_RS01580at 349.617 kb on - strand, within DDA3937_RS01580at 349.617 kb on - strand, within DDA3937_RS01580at 349.631 kb on + strandat 349.632 kb on - strand, within DDA3937_RS01580at 349.661 kb on + strand, within DDA3937_RS01580at 349.661 kb on + strand, within DDA3937_RS01580at 349.661 kb on + strand, within DDA3937_RS01580at 349.662 kb on - strand, within DDA3937_RS01580at 349.662 kb on - strand, within DDA3937_RS01580at 349.694 kb on + strand, within DDA3937_RS01580at 349.715 kb on + strand, within DDA3937_RS01580at 349.715 kb on + strand, within DDA3937_RS01580at 349.716 kb on - strand, within DDA3937_RS01580at 349.730 kb on + strand, within DDA3937_RS01580at 349.730 kb on + strand, within DDA3937_RS01580at 349.730 kb on + strand, within DDA3937_RS01580at 349.731 kb on - strand, within DDA3937_RS01580at 349.731 kb on - strand, within DDA3937_RS01580at 349.751 kb on + strand, within DDA3937_RS01580at 349.751 kb on + strand, within DDA3937_RS01580at 349.751 kb on + strand, within DDA3937_RS01580at 349.751 kb on + strand, within DDA3937_RS01580at 349.751 kb on + strand, within DDA3937_RS01580

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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346,981 + -0.6
347,009 - -0.4
347,053 + +0.2
347,161 + -0.3
347,294 - DDA3937_RS01565 0.16 +0.7
347,368 + DDA3937_RS01565 0.25 -0.1
347,369 - DDA3937_RS01565 0.26 -1.7
347,369 - DDA3937_RS01565 0.26 -0.3
347,396 + DDA3937_RS01565 0.29 -0.0
347,397 - DDA3937_RS01565 0.29 +0.4
347,397 - DDA3937_RS01565 0.29 -1.1
347,407 + DDA3937_RS01565 0.30 -0.1
347,446 + DDA3937_RS01565 0.35 +0.7
347,494 + DDA3937_RS01565 0.41 +0.2
347,494 + DDA3937_RS01565 0.41 -1.3
347,494 + DDA3937_RS01565 0.41 -0.7
347,494 + DDA3937_RS01565 0.41 -0.5
347,495 - DDA3937_RS01565 0.41 +0.2
347,495 - DDA3937_RS01565 0.41 +0.1
347,495 - DDA3937_RS01565 0.41 -1.1
347,589 + DDA3937_RS01565 0.53 -0.1
347,589 + DDA3937_RS01565 0.53 -0.0
347,589 + DDA3937_RS01565 0.53 -0.3
347,590 - DDA3937_RS01565 0.53 -0.3
347,795 + DDA3937_RS01565 0.78 -0.2
347,795 + DDA3937_RS01565 0.78 +0.9
347,795 + DDA3937_RS01565 0.78 -0.3
347,796 - DDA3937_RS01565 0.78 -0.1
347,796 - DDA3937_RS01565 0.78 -0.0
347,796 - DDA3937_RS01565 0.78 +1.3
347,801 + DDA3937_RS01565 0.79 -1.0
347,801 + DDA3937_RS01565 0.79 -1.3
347,801 + DDA3937_RS01565 0.79 +1.3
347,801 + DDA3937_RS01565 0.79 -0.4
347,801 + DDA3937_RS01565 0.79 -2.3
347,801 + DDA3937_RS01565 0.79 +0.0
347,801 + DDA3937_RS01565 0.79 -0.5
347,801 + DDA3937_RS01565 0.79 -1.1
347,802 - DDA3937_RS01565 0.79 -0.1
347,802 - DDA3937_RS01565 0.79 -2.5
347,802 - DDA3937_RS01565 0.79 -1.4
347,802 - DDA3937_RS01565 0.79 -0.8
347,802 - DDA3937_RS01565 0.79 -0.1
347,802 - DDA3937_RS01565 0.79 -0.4
347,802 - DDA3937_RS01565 0.79 -0.5
347,802 - DDA3937_RS01565 0.79 +0.3
347,965 + -2.6
347,969 + -0.8
347,970 - +0.4
347,980 - -0.1
347,980 - -0.5
347,980 - -0.6
347,983 - -0.1
347,983 - +0.1
348,054 + DDA3937_RS01570 0.10 -2.4
348,054 + DDA3937_RS01570 0.10 -1.3
348,055 - DDA3937_RS01570 0.10 -1.3
348,119 + DDA3937_RS01570 0.18 -1.7
348,120 - DDA3937_RS01570 0.19 +0.3
348,120 - DDA3937_RS01570 0.19 +0.2
348,120 - DDA3937_RS01570 0.19 -1.3
348,120 - DDA3937_RS01570 0.19 +1.7
348,121 + DDA3937_RS01570 0.19 -0.7
348,122 - DDA3937_RS01570 0.19 -2.4
348,166 - DDA3937_RS01570 0.24 -0.9
348,166 - DDA3937_RS01570 0.24 +0.3
348,166 - DDA3937_RS01570 0.24 -0.2
348,175 + DDA3937_RS01570 0.26 -2.4
348,211 + DDA3937_RS01570 0.30 -1.8
348,211 + DDA3937_RS01570 0.30 -0.3
348,212 - DDA3937_RS01570 0.30 -1.0
348,212 - DDA3937_RS01570 0.30 +1.3
348,212 - DDA3937_RS01570 0.30 -0.1
348,215 + DDA3937_RS01570 0.31 -2.1
348,215 + DDA3937_RS01570 0.31 -0.8
348,215 + DDA3937_RS01570 0.31 -1.4
348,215 + DDA3937_RS01570 0.31 -0.6
348,215 + DDA3937_RS01570 0.31 -2.3
348,216 - DDA3937_RS01570 0.31 -0.4
348,216 - DDA3937_RS01570 0.31 -0.4
348,368 - DDA3937_RS01570 0.50 +1.3
348,574 + DDA3937_RS01570 0.77 +0.1
348,574 + DDA3937_RS01570 0.77 -1.2
348,575 - DDA3937_RS01570 0.77 +0.3
348,575 - DDA3937_RS01570 0.77 -1.0
348,638 + DDA3937_RS01570 0.85 -2.3
348,796 + -0.1
348,796 + -0.6
348,797 - -0.5
348,823 + +0.3
348,833 - DDA3937_RS01575 0.11 -0.7
348,879 + DDA3937_RS01575 0.19 +0.4
348,880 - DDA3937_RS01575 0.19 +2.3
348,880 - DDA3937_RS01575 0.19 +0.3
348,905 + DDA3937_RS01575 0.23 -0.5
348,917 + DDA3937_RS01575 0.25 +0.3
348,917 + DDA3937_RS01575 0.25 +0.5
348,972 - DDA3937_RS01575 0.34 -0.0
348,993 + DDA3937_RS01575 0.37 -0.6
348,993 + DDA3937_RS01575 0.37 -0.6
348,993 + DDA3937_RS01575 0.37 -1.3
348,994 - DDA3937_RS01575 0.37 +1.5
349,017 - DDA3937_RS01575 0.41 -1.0
349,029 + DDA3937_RS01575 0.43 +1.1
349,092 + DDA3937_RS01575 0.53 -0.2
349,092 + DDA3937_RS01575 0.53 -0.8
349,092 + DDA3937_RS01575 0.53 +0.1
349,213 + DDA3937_RS01575 0.72 -0.2
349,213 + DDA3937_RS01575 0.72 +0.2
349,214 - DDA3937_RS01575 0.72 -0.7
349,214 - DDA3937_RS01575 0.72 -0.6
349,215 + DDA3937_RS01575 0.73 +0.4
349,215 + DDA3937_RS01575 0.73 -0.5
349,215 + DDA3937_RS01575 0.73 -0.6
349,216 - DDA3937_RS01575 0.73 -0.7
349,216 - DDA3937_RS01575 0.73 -0.3
349,216 - DDA3937_RS01575 0.73 -1.6
349,217 + DDA3937_RS01575 0.73 -0.5
349,217 + DDA3937_RS01575 0.73 +1.0
349,217 + DDA3937_RS01575 0.73 +1.0
349,217 + DDA3937_RS01575 0.73 -0.2
349,217 + DDA3937_RS01575 0.73 +0.5
349,217 + DDA3937_RS01575 0.73 -0.1
349,217 + DDA3937_RS01575 0.73 -0.1
349,218 - DDA3937_RS01575 0.73 +0.3
349,218 - DDA3937_RS01575 0.73 +0.5
349,218 - DDA3937_RS01575 0.73 -0.1
349,218 - DDA3937_RS01575 0.73 -0.7
349,218 - DDA3937_RS01575 0.73 -1.1
349,218 - DDA3937_RS01575 0.73 +1.0
349,218 - DDA3937_RS01575 0.73 -0.4
349,218 - DDA3937_RS01575 0.73 -1.2
349,235 + DDA3937_RS01575 0.76 -1.1
349,256 + DDA3937_RS01575 0.79 +1.0
349,257 - DDA3937_RS01575 0.79 -0.2
349,286 + DDA3937_RS01575 0.84 +0.3
349,287 - DDA3937_RS01575 0.84 -0.2
349,307 + DDA3937_RS01575 0.87 +0.9
349,308 - DDA3937_RS01575 0.88 +0.2
349,383 + +0.4
349,417 - +0.6
349,492 + DDA3937_RS01580 0.14 -1.2
349,493 - DDA3937_RS01580 0.14 -1.3
349,499 + DDA3937_RS01580 0.15 -0.8
349,543 + DDA3937_RS01580 0.21 -1.5
349,544 - DDA3937_RS01580 0.22 +1.0
349,544 - DDA3937_RS01580 0.22 -0.1
349,564 + DDA3937_RS01580 0.25 -0.1
349,564 + DDA3937_RS01580 0.25 -0.7
349,565 - DDA3937_RS01580 0.25 -0.5
349,580 + DDA3937_RS01580 0.27 -0.1
349,580 + DDA3937_RS01580 0.27 -0.5
349,580 + DDA3937_RS01580 0.27 -0.5
349,581 - DDA3937_RS01580 0.27 -1.1
349,581 - DDA3937_RS01580 0.27 -0.4
349,581 - DDA3937_RS01580 0.27 -0.9
349,616 + DDA3937_RS01580 0.33 -0.2
349,616 + DDA3937_RS01580 0.33 -0.1
349,616 + DDA3937_RS01580 0.33 +0.4
349,617 - DDA3937_RS01580 0.33 -1.6
349,617 - DDA3937_RS01580 0.33 -0.9
349,617 - DDA3937_RS01580 0.33 -1.0
349,617 - DDA3937_RS01580 0.33 +0.9
349,631 + +0.3
349,632 - DDA3937_RS01580 0.35 -1.2
349,661 + DDA3937_RS01580 0.39 +0.3
349,661 + DDA3937_RS01580 0.39 -1.0
349,661 + DDA3937_RS01580 0.39 -1.5
349,662 - DDA3937_RS01580 0.40 +1.0
349,662 - DDA3937_RS01580 0.40 +0.0
349,694 + DDA3937_RS01580 0.44 +1.3
349,715 + DDA3937_RS01580 0.48 +0.1
349,715 + DDA3937_RS01580 0.48 -0.9
349,716 - DDA3937_RS01580 0.48 +0.3
349,730 + DDA3937_RS01580 0.50 +0.5
349,730 + DDA3937_RS01580 0.50 +0.7
349,730 + DDA3937_RS01580 0.50 -0.1
349,731 - DDA3937_RS01580 0.50 -0.6
349,731 - DDA3937_RS01580 0.50 +0.8
349,751 + DDA3937_RS01580 0.53 -1.1
349,751 + DDA3937_RS01580 0.53 -1.2
349,751 + DDA3937_RS01580 0.53 -0.6
349,751 + DDA3937_RS01580 0.53 -1.0
349,751 + DDA3937_RS01580 0.53 -0.5

Or see this region's nucleotide sequence