Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS01495 and DDA3937_RS01500 are separated by 190 nucleotides DDA3937_RS01500 and DDA3937_RS01505 are separated by 66 nucleotides DDA3937_RS01505 and DDA3937_RS01510 are separated by 180 nucleotides DDA3937_RS01510 and DDA3937_RS01515 overlap by 4 nucleotides
DDA3937_RS01495: DDA3937_RS01495 - ribosome-associated protein, at 336,038 to 336,586
_RS01495
DDA3937_RS01500: DDA3937_RS01500 - metalloprotease PmbA, at 336,777 to 338,117
_RS01500
DDA3937_RS01505: DDA3937_RS01505 - nucleoside diphosphate kinase regulator, at 338,184 to 338,594
_RS01505
DDA3937_RS01510: DDA3937_RS01510 - PTS phosphocarrier protein NPr, at 338,775 to 339,047
_RS01510
DDA3937_RS01515: DDA3937_RS01515 - RNase adapter RapZ, at 339,044 to 339,898
_RS01515
Position (kb) 336
337
338
339 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 336.020 kb on + strand at 336.020 kb on + strand at 336.020 kb on + strand at 336.020 kb on + strand at 336.020 kb on + strand at 336.020 kb on + strand at 336.020 kb on + strand at 336.020 kb on + strand at 336.021 kb on - strand at 336.021 kb on - strand at 336.021 kb on - strand at 336.021 kb on - strand at 336.021 kb on - strand at 336.021 kb on - strand at 336.021 kb on - strand at 336.036 kb on + strand at 336.036 kb on + strand at 336.066 kb on + strand at 336.067 kb on - strand at 336.067 kb on - strand at 336.091 kb on + strand at 336.091 kb on + strand at 336.092 kb on - strand at 336.092 kb on - strand at 336.127 kb on + strand, within DDA3937_RS01495 at 336.128 kb on - strand, within DDA3937_RS01495 at 336.128 kb on - strand, within DDA3937_RS01495 at 336.131 kb on + strand, within DDA3937_RS01495 at 336.131 kb on + strand, within DDA3937_RS01495 at 336.132 kb on - strand, within DDA3937_RS01495 at 336.132 kb on - strand, within DDA3937_RS01495 at 336.132 kb on - strand, within DDA3937_RS01495 at 336.132 kb on - strand, within DDA3937_RS01495 at 336.132 kb on - strand, within DDA3937_RS01495 at 336.252 kb on - strand, within DDA3937_RS01495 at 336.252 kb on - strand, within DDA3937_RS01495 at 336.365 kb on - strand, within DDA3937_RS01495 at 336.515 kb on + strand, within DDA3937_RS01495 at 336.515 kb on + strand, within DDA3937_RS01495 at 336.515 kb on + strand, within DDA3937_RS01495 at 336.516 kb on - strand, within DDA3937_RS01495 at 336.516 kb on - strand, within DDA3937_RS01495 at 336.516 kb on - strand, within DDA3937_RS01495 at 336.600 kb on + strand at 336.601 kb on - strand at 336.616 kb on + strand at 336.617 kb on - strand at 336.669 kb on + strand at 336.670 kb on - strand at 336.670 kb on - strand at 336.670 kb on - strand at 336.670 kb on - strand at 336.676 kb on + strand at 336.677 kb on - strand at 336.677 kb on - strand at 336.686 kb on + strand at 336.686 kb on + strand at 336.687 kb on - strand at 336.697 kb on + strand at 336.697 kb on + strand at 336.698 kb on - strand at 336.698 kb on - strand at 336.698 kb on - strand at 336.698 kb on - strand at 336.709 kb on + strand at 336.709 kb on + strand at 336.709 kb on + strand at 336.709 kb on + strand at 336.710 kb on - strand at 336.765 kb on + strand at 336.766 kb on - strand at 336.784 kb on + strand at 336.784 kb on + strand at 336.785 kb on - strand at 336.809 kb on + strand at 336.809 kb on + strand at 336.809 kb on + strand at 336.809 kb on + strand at 336.810 kb on - strand at 336.810 kb on - strand at 336.810 kb on - strand at 336.810 kb on - strand at 336.976 kb on - strand, within DDA3937_RS01500 at 336.976 kb on - strand, within DDA3937_RS01500 at 336.976 kb on - strand, within DDA3937_RS01500 at 336.976 kb on - strand, within DDA3937_RS01500 at 336.976 kb on - strand, within DDA3937_RS01500 at 336.976 kb on - strand, within DDA3937_RS01500 at 336.978 kb on + strand, within DDA3937_RS01500 at 336.978 kb on + strand, within DDA3937_RS01500 at 336.979 kb on - strand, within DDA3937_RS01500 at 336.979 kb on - strand, within DDA3937_RS01500 at 337.068 kb on + strand, within DDA3937_RS01500 at 337.253 kb on + strand, within DDA3937_RS01500 at 337.263 kb on + strand, within DDA3937_RS01500 at 337.263 kb on + strand, within DDA3937_RS01500 at 337.309 kb on - strand, within DDA3937_RS01500 at 337.309 kb on - strand, within DDA3937_RS01500 at 337.309 kb on - strand, within DDA3937_RS01500 at 337.377 kb on + strand, within DDA3937_RS01500 at 337.378 kb on - strand, within DDA3937_RS01500 at 337.383 kb on + strand, within DDA3937_RS01500 at 337.475 kb on + strand, within DDA3937_RS01500 at 337.476 kb on - strand, within DDA3937_RS01500 at 337.572 kb on + strand, within DDA3937_RS01500 at 337.577 kb on + strand, within DDA3937_RS01500 at 337.578 kb on - strand, within DDA3937_RS01500 at 337.578 kb on - strand, within DDA3937_RS01500 at 337.578 kb on - strand, within DDA3937_RS01500 at 337.578 kb on - strand, within DDA3937_RS01500 at 337.758 kb on + strand, within DDA3937_RS01500 at 337.758 kb on + strand, within DDA3937_RS01500 at 337.758 kb on + strand, within DDA3937_RS01500 at 337.758 kb on + strand, within DDA3937_RS01500 at 337.758 kb on + strand, within DDA3937_RS01500 at 337.758 kb on + strand, within DDA3937_RS01500 at 337.759 kb on - strand, within DDA3937_RS01500 at 337.759 kb on - strand, within DDA3937_RS01500 at 337.759 kb on - strand, within DDA3937_RS01500 at 337.770 kb on - strand, within DDA3937_RS01500 at 337.811 kb on + strand, within DDA3937_RS01500 at 337.812 kb on - strand, within DDA3937_RS01500 at 338.015 kb on + strand at 338.015 kb on + strand at 338.015 kb on + strand at 338.016 kb on - strand at 338.025 kb on - strand at 338.025 kb on - strand at 338.113 kb on + strand at 338.113 kb on + strand at 338.113 kb on + strand at 338.115 kb on + strand at 338.115 kb on + strand at 338.115 kb on + strand at 338.115 kb on + strand at 338.115 kb on + strand at 338.116 kb on - strand at 338.116 kb on - strand at 338.116 kb on - strand at 338.116 kb on - strand at 338.182 kb on + strand at 338.183 kb on - strand at 338.194 kb on + strand at 338.218 kb on + strand at 338.218 kb on + strand at 338.277 kb on - strand, within DDA3937_RS01505 at 338.277 kb on - strand, within DDA3937_RS01505 at 338.381 kb on + strand, within DDA3937_RS01505 at 338.382 kb on - strand, within DDA3937_RS01505 at 338.423 kb on + strand, within DDA3937_RS01505 at 338.424 kb on - strand, within DDA3937_RS01505 at 338.571 kb on - strand at 338.589 kb on - strand at 338.594 kb on + strand at 338.594 kb on + strand at 338.594 kb on + strand at 338.595 kb on - strand at 338.595 kb on - strand at 338.617 kb on - strand at 338.617 kb on - strand at 338.655 kb on + strand at 338.655 kb on + strand at 338.655 kb on + strand at 338.655 kb on + strand at 338.656 kb on - strand at 338.656 kb on - strand at 338.656 kb on - strand at 338.660 kb on + strand at 338.661 kb on - strand at 338.671 kb on + strand at 338.671 kb on + strand at 338.671 kb on + strand at 338.672 kb on - strand at 338.691 kb on + strand at 338.699 kb on - strand at 338.707 kb on - strand at 338.776 kb on + strand at 338.777 kb on - strand at 338.777 kb on - strand at 338.802 kb on + strand at 338.803 kb on - strand, within DDA3937_RS01510 at 338.811 kb on - strand, within DDA3937_RS01510 at 338.940 kb on + strand, within DDA3937_RS01510 at 338.940 kb on + strand, within DDA3937_RS01510 at 338.941 kb on - strand, within DDA3937_RS01510 at 338.967 kb on + strand, within DDA3937_RS01510 at 338.967 kb on + strand, within DDA3937_RS01510 at 339.083 kb on + strand at 339.083 kb on + strand at 339.084 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 336,020 + +1.4 336,020 + -0.7 336,020 + +0.1 336,020 + -0.1 336,020 + -1.3 336,020 + +0.1 336,020 + +0.2 336,020 + +0.0 336,021 - -0.1 336,021 - +0.6 336,021 - -0.9 336,021 - -0.1 336,021 - -0.2 336,021 - +0.0 336,021 - -0.6 336,036 + -0.1 336,036 + -0.4 336,066 + -0.4 336,067 - -0.6 336,067 - -0.3 336,091 + -1.2 336,091 + -0.3 336,092 - -1.1 336,092 - -0.2 336,127 + DDA3937_RS01495 0.16 -0.6 336,128 - DDA3937_RS01495 0.16 -1.4 336,128 - DDA3937_RS01495 0.16 -1.2 336,131 + DDA3937_RS01495 0.17 -0.7 336,131 + DDA3937_RS01495 0.17 +0.6 336,132 - DDA3937_RS01495 0.17 -0.1 336,132 - DDA3937_RS01495 0.17 -0.2 336,132 - DDA3937_RS01495 0.17 -0.2 336,132 - DDA3937_RS01495 0.17 -0.4 336,132 - DDA3937_RS01495 0.17 -0.6 336,252 - DDA3937_RS01495 0.39 -1.3 336,252 - DDA3937_RS01495 0.39 -0.5 336,365 - DDA3937_RS01495 0.60 -3.9 336,515 + DDA3937_RS01495 0.87 -0.5 336,515 + DDA3937_RS01495 0.87 -1.0 336,515 + DDA3937_RS01495 0.87 +0.8 336,516 - DDA3937_RS01495 0.87 -1.2 336,516 - DDA3937_RS01495 0.87 -2.6 336,516 - DDA3937_RS01495 0.87 -0.6 336,600 + -1.1 336,601 - -0.1 336,616 + -1.5 336,617 - -0.4 336,669 + -1.7 336,670 - -1.4 336,670 - +0.9 336,670 - +0.3 336,670 - -0.6 336,676 + +0.4 336,677 - -0.4 336,677 - -0.8 336,686 + +1.3 336,686 + +0.6 336,687 - +0.9 336,697 + -2.9 336,697 + -0.8 336,698 - +0.2 336,698 - -0.3 336,698 - -0.9 336,698 - -0.9 336,709 + +0.3 336,709 + +0.8 336,709 + -1.1 336,709 + -0.3 336,710 - +0.9 336,765 + +0.6 336,766 - +0.5 336,784 + +0.3 336,784 + -0.1 336,785 - +0.9 336,809 + -0.1 336,809 + +1.7 336,809 + -0.3 336,809 + -0.9 336,810 - -1.5 336,810 - -1.1 336,810 - +1.6 336,810 - +1.3 336,976 - DDA3937_RS01500 0.15 -0.0 336,976 - DDA3937_RS01500 0.15 -1.9 336,976 - DDA3937_RS01500 0.15 -2.7 336,976 - DDA3937_RS01500 0.15 -2.3 336,976 - DDA3937_RS01500 0.15 -0.7 336,976 - DDA3937_RS01500 0.15 +0.7 336,978 + DDA3937_RS01500 0.15 -0.9 336,978 + DDA3937_RS01500 0.15 -0.3 336,979 - DDA3937_RS01500 0.15 -0.3 336,979 - DDA3937_RS01500 0.15 -0.7 337,068 + DDA3937_RS01500 0.22 +0.3 337,253 + DDA3937_RS01500 0.35 -2.1 337,263 + DDA3937_RS01500 0.36 -0.8 337,263 + DDA3937_RS01500 0.36 -0.3 337,309 - DDA3937_RS01500 0.40 -2.0 337,309 - DDA3937_RS01500 0.40 -0.7 337,309 - DDA3937_RS01500 0.40 -1.4 337,377 + DDA3937_RS01500 0.45 -0.3 337,378 - DDA3937_RS01500 0.45 -0.6 337,383 + DDA3937_RS01500 0.45 -2.0 337,475 + DDA3937_RS01500 0.52 -0.2 337,476 - DDA3937_RS01500 0.52 -0.3 337,572 + DDA3937_RS01500 0.59 -1.1 337,577 + DDA3937_RS01500 0.60 -2.0 337,578 - DDA3937_RS01500 0.60 -1.3 337,578 - DDA3937_RS01500 0.60 -0.3 337,578 - DDA3937_RS01500 0.60 -0.0 337,578 - DDA3937_RS01500 0.60 -0.3 337,758 + DDA3937_RS01500 0.73 -0.1 337,758 + DDA3937_RS01500 0.73 -0.9 337,758 + DDA3937_RS01500 0.73 +0.4 337,758 + DDA3937_RS01500 0.73 -0.1 337,758 + DDA3937_RS01500 0.73 -1.4 337,758 + DDA3937_RS01500 0.73 -0.5 337,759 - DDA3937_RS01500 0.73 -0.0 337,759 - DDA3937_RS01500 0.73 -0.8 337,759 - DDA3937_RS01500 0.73 +0.0 337,770 - DDA3937_RS01500 0.74 -1.3 337,811 + DDA3937_RS01500 0.77 -0.2 337,812 - DDA3937_RS01500 0.77 +0.1 338,015 + +0.8 338,015 + -1.5 338,015 + -1.6 338,016 - -1.0 338,025 - -0.4 338,025 - +1.9 338,113 + -0.2 338,113 + -0.5 338,113 + -0.2 338,115 + -0.0 338,115 + -0.7 338,115 + -0.1 338,115 + +0.5 338,115 + +0.0 338,116 - +0.4 338,116 - +0.3 338,116 - +0.1 338,116 - -0.1 338,182 + +0.5 338,183 - +0.1 338,194 + -0.1 338,218 + +0.9 338,218 + +0.5 338,277 - DDA3937_RS01505 0.23 +0.9 338,277 - DDA3937_RS01505 0.23 -0.7 338,381 + DDA3937_RS01505 0.48 -0.3 338,382 - DDA3937_RS01505 0.48 +1.0 338,423 + DDA3937_RS01505 0.58 +1.2 338,424 - DDA3937_RS01505 0.58 -1.4 338,571 - -0.3 338,589 - +0.3 338,594 + +0.7 338,594 + +1.3 338,594 + -0.2 338,595 - +0.0 338,595 - -1.0 338,617 - -0.2 338,617 - +0.2 338,655 + +0.2 338,655 + +0.6 338,655 + +0.1 338,655 + +1.0 338,656 - +0.6 338,656 - -0.2 338,656 - -0.3 338,660 + +0.1 338,661 - +0.8 338,671 + +0.9 338,671 + -0.9 338,671 + +0.3 338,672 - -0.2 338,691 + -0.0 338,699 - +0.1 338,707 - +0.4 338,776 + +0.6 338,777 - +0.2 338,777 - -2.2 338,802 + -0.9 338,803 - DDA3937_RS01510 0.10 -0.7 338,811 - DDA3937_RS01510 0.13 -2.2 338,940 + DDA3937_RS01510 0.60 +0.3 338,940 + DDA3937_RS01510 0.60 -0.1 338,941 - DDA3937_RS01510 0.61 -0.2 338,967 + DDA3937_RS01510 0.70 -0.4 338,967 + DDA3937_RS01510 0.70 -0.3 339,083 + +0.1 339,083 + +0.2 339,084 - -2.4
Or see this region's nucleotide sequence