Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS01495

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS01490 and DDA3937_RS01495 are separated by 403 nucleotidesDDA3937_RS01495 and DDA3937_RS01500 are separated by 190 nucleotides DDA3937_RS01490: DDA3937_RS01490 - LysE family transporter, at 335,008 to 335,634 _RS01490 DDA3937_RS01495: DDA3937_RS01495 - ribosome-associated protein, at 336,038 to 336,586 _RS01495 DDA3937_RS01500: DDA3937_RS01500 - metalloprotease PmbA, at 336,777 to 338,117 _RS01500 Position (kb) 336 337Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 335.089 kb on - strand, within DDA3937_RS01490at 335.231 kb on + strand, within DDA3937_RS01490at 335.232 kb on - strand, within DDA3937_RS01490at 335.252 kb on - strand, within DDA3937_RS01490at 335.252 kb on - strand, within DDA3937_RS01490at 335.268 kb on + strand, within DDA3937_RS01490at 335.350 kb on + strand, within DDA3937_RS01490at 335.350 kb on + strand, within DDA3937_RS01490at 335.365 kb on - strand, within DDA3937_RS01490at 335.365 kb on - strand, within DDA3937_RS01490at 335.365 kb on - strand, within DDA3937_RS01490at 335.509 kb on + strand, within DDA3937_RS01490at 335.509 kb on + strand, within DDA3937_RS01490at 335.509 kb on + strand, within DDA3937_RS01490at 335.510 kb on - strand, within DDA3937_RS01490at 335.510 kb on - strand, within DDA3937_RS01490at 335.586 kb on + strandat 335.587 kb on - strandat 335.587 kb on - strandat 335.632 kb on + strandat 335.633 kb on - strandat 335.633 kb on - strandat 335.689 kb on + strandat 335.690 kb on - strandat 335.745 kb on - strandat 335.745 kb on - strandat 336.020 kb on + strandat 336.020 kb on + strandat 336.020 kb on + strandat 336.020 kb on + strandat 336.020 kb on + strandat 336.020 kb on + strandat 336.020 kb on + strandat 336.020 kb on + strandat 336.021 kb on - strandat 336.021 kb on - strandat 336.021 kb on - strandat 336.021 kb on - strandat 336.021 kb on - strandat 336.021 kb on - strandat 336.021 kb on - strandat 336.036 kb on + strandat 336.036 kb on + strandat 336.066 kb on + strandat 336.067 kb on - strandat 336.067 kb on - strandat 336.091 kb on + strandat 336.091 kb on + strandat 336.092 kb on - strandat 336.092 kb on - strandat 336.127 kb on + strand, within DDA3937_RS01495at 336.128 kb on - strand, within DDA3937_RS01495at 336.128 kb on - strand, within DDA3937_RS01495at 336.131 kb on + strand, within DDA3937_RS01495at 336.131 kb on + strand, within DDA3937_RS01495at 336.132 kb on - strand, within DDA3937_RS01495at 336.132 kb on - strand, within DDA3937_RS01495at 336.132 kb on - strand, within DDA3937_RS01495at 336.132 kb on - strand, within DDA3937_RS01495at 336.132 kb on - strand, within DDA3937_RS01495at 336.252 kb on - strand, within DDA3937_RS01495at 336.252 kb on - strand, within DDA3937_RS01495at 336.365 kb on - strand, within DDA3937_RS01495at 336.515 kb on + strand, within DDA3937_RS01495at 336.515 kb on + strand, within DDA3937_RS01495at 336.515 kb on + strand, within DDA3937_RS01495at 336.516 kb on - strand, within DDA3937_RS01495at 336.516 kb on - strand, within DDA3937_RS01495at 336.516 kb on - strand, within DDA3937_RS01495at 336.600 kb on + strandat 336.601 kb on - strandat 336.616 kb on + strandat 336.617 kb on - strandat 336.669 kb on + strandat 336.670 kb on - strandat 336.670 kb on - strandat 336.670 kb on - strandat 336.670 kb on - strandat 336.676 kb on + strandat 336.677 kb on - strandat 336.677 kb on - strandat 336.686 kb on + strandat 336.686 kb on + strandat 336.687 kb on - strandat 336.697 kb on + strandat 336.697 kb on + strandat 336.698 kb on - strandat 336.698 kb on - strandat 336.698 kb on - strandat 336.698 kb on - strandat 336.709 kb on + strandat 336.709 kb on + strandat 336.709 kb on + strandat 336.709 kb on + strandat 336.710 kb on - strandat 336.765 kb on + strandat 336.766 kb on - strandat 336.784 kb on + strandat 336.784 kb on + strandat 336.785 kb on - strandat 336.809 kb on + strandat 336.809 kb on + strandat 336.809 kb on + strandat 336.809 kb on + strandat 336.810 kb on - strandat 336.810 kb on - strandat 336.810 kb on - strandat 336.810 kb on - strandat 336.976 kb on - strand, within DDA3937_RS01500at 336.976 kb on - strand, within DDA3937_RS01500at 336.976 kb on - strand, within DDA3937_RS01500at 336.976 kb on - strand, within DDA3937_RS01500at 336.976 kb on - strand, within DDA3937_RS01500at 336.976 kb on - strand, within DDA3937_RS01500at 336.978 kb on + strand, within DDA3937_RS01500at 336.978 kb on + strand, within DDA3937_RS01500at 336.979 kb on - strand, within DDA3937_RS01500at 336.979 kb on - strand, within DDA3937_RS01500at 337.068 kb on + strand, within DDA3937_RS01500at 337.253 kb on + strand, within DDA3937_RS01500at 337.263 kb on + strand, within DDA3937_RS01500at 337.263 kb on + strand, within DDA3937_RS01500at 337.309 kb on - strand, within DDA3937_RS01500at 337.309 kb on - strand, within DDA3937_RS01500at 337.309 kb on - strand, within DDA3937_RS01500at 337.377 kb on + strand, within DDA3937_RS01500at 337.378 kb on - strand, within DDA3937_RS01500at 337.383 kb on + strand, within DDA3937_RS01500at 337.475 kb on + strand, within DDA3937_RS01500at 337.476 kb on - strand, within DDA3937_RS01500at 337.572 kb on + strand, within DDA3937_RS01500at 337.577 kb on + strand, within DDA3937_RS01500at 337.578 kb on - strand, within DDA3937_RS01500at 337.578 kb on - strand, within DDA3937_RS01500at 337.578 kb on - strand, within DDA3937_RS01500at 337.578 kb on - strand, within DDA3937_RS01500

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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335,089 - DDA3937_RS01490 0.13 -2.3
335,231 + DDA3937_RS01490 0.36 +0.3
335,232 - DDA3937_RS01490 0.36 +1.0
335,252 - DDA3937_RS01490 0.39 +0.0
335,252 - DDA3937_RS01490 0.39 -1.0
335,268 + DDA3937_RS01490 0.41 -1.3
335,350 + DDA3937_RS01490 0.55 +0.0
335,350 + DDA3937_RS01490 0.55 -0.6
335,365 - DDA3937_RS01490 0.57 -0.1
335,365 - DDA3937_RS01490 0.57 -0.1
335,365 - DDA3937_RS01490 0.57 +0.8
335,509 + DDA3937_RS01490 0.80 -1.1
335,509 + DDA3937_RS01490 0.80 -0.6
335,509 + DDA3937_RS01490 0.80 -0.7
335,510 - DDA3937_RS01490 0.80 -0.2
335,510 - DDA3937_RS01490 0.80 -0.0
335,586 + -0.9
335,587 - +1.5
335,587 - +0.0
335,632 + +0.4
335,633 - +0.0
335,633 - -0.7
335,689 + -0.4
335,690 - +0.5
335,745 - -1.3
335,745 - -0.3
336,020 + +1.4
336,020 + -0.7
336,020 + +0.1
336,020 + -0.1
336,020 + -1.3
336,020 + +0.1
336,020 + +0.2
336,020 + +0.0
336,021 - -0.1
336,021 - +0.6
336,021 - -0.9
336,021 - -0.1
336,021 - -0.2
336,021 - +0.0
336,021 - -0.6
336,036 + -0.1
336,036 + -0.4
336,066 + -0.4
336,067 - -0.6
336,067 - -0.3
336,091 + -1.2
336,091 + -0.3
336,092 - -1.1
336,092 - -0.2
336,127 + DDA3937_RS01495 0.16 -0.6
336,128 - DDA3937_RS01495 0.16 -1.4
336,128 - DDA3937_RS01495 0.16 -1.2
336,131 + DDA3937_RS01495 0.17 -0.7
336,131 + DDA3937_RS01495 0.17 +0.6
336,132 - DDA3937_RS01495 0.17 -0.1
336,132 - DDA3937_RS01495 0.17 -0.2
336,132 - DDA3937_RS01495 0.17 -0.2
336,132 - DDA3937_RS01495 0.17 -0.4
336,132 - DDA3937_RS01495 0.17 -0.6
336,252 - DDA3937_RS01495 0.39 -1.3
336,252 - DDA3937_RS01495 0.39 -0.5
336,365 - DDA3937_RS01495 0.60 -3.9
336,515 + DDA3937_RS01495 0.87 -0.5
336,515 + DDA3937_RS01495 0.87 -1.0
336,515 + DDA3937_RS01495 0.87 +0.8
336,516 - DDA3937_RS01495 0.87 -1.2
336,516 - DDA3937_RS01495 0.87 -2.6
336,516 - DDA3937_RS01495 0.87 -0.6
336,600 + -1.1
336,601 - -0.1
336,616 + -1.5
336,617 - -0.4
336,669 + -1.7
336,670 - -1.4
336,670 - +0.9
336,670 - +0.3
336,670 - -0.6
336,676 + +0.4
336,677 - -0.4
336,677 - -0.8
336,686 + +1.3
336,686 + +0.6
336,687 - +0.9
336,697 + -2.9
336,697 + -0.8
336,698 - +0.2
336,698 - -0.3
336,698 - -0.9
336,698 - -0.9
336,709 + +0.3
336,709 + +0.8
336,709 + -1.1
336,709 + -0.3
336,710 - +0.9
336,765 + +0.6
336,766 - +0.5
336,784 + +0.3
336,784 + -0.1
336,785 - +0.9
336,809 + -0.1
336,809 + +1.7
336,809 + -0.3
336,809 + -0.9
336,810 - -1.5
336,810 - -1.1
336,810 - +1.6
336,810 - +1.3
336,976 - DDA3937_RS01500 0.15 -0.0
336,976 - DDA3937_RS01500 0.15 -1.9
336,976 - DDA3937_RS01500 0.15 -2.7
336,976 - DDA3937_RS01500 0.15 -2.3
336,976 - DDA3937_RS01500 0.15 -0.7
336,976 - DDA3937_RS01500 0.15 +0.7
336,978 + DDA3937_RS01500 0.15 -0.9
336,978 + DDA3937_RS01500 0.15 -0.3
336,979 - DDA3937_RS01500 0.15 -0.3
336,979 - DDA3937_RS01500 0.15 -0.7
337,068 + DDA3937_RS01500 0.22 +0.3
337,253 + DDA3937_RS01500 0.35 -2.1
337,263 + DDA3937_RS01500 0.36 -0.8
337,263 + DDA3937_RS01500 0.36 -0.3
337,309 - DDA3937_RS01500 0.40 -2.0
337,309 - DDA3937_RS01500 0.40 -0.7
337,309 - DDA3937_RS01500 0.40 -1.4
337,377 + DDA3937_RS01500 0.45 -0.3
337,378 - DDA3937_RS01500 0.45 -0.6
337,383 + DDA3937_RS01500 0.45 -2.0
337,475 + DDA3937_RS01500 0.52 -0.2
337,476 - DDA3937_RS01500 0.52 -0.3
337,572 + DDA3937_RS01500 0.59 -1.1
337,577 + DDA3937_RS01500 0.60 -2.0
337,578 - DDA3937_RS01500 0.60 -1.3
337,578 - DDA3937_RS01500 0.60 -0.3
337,578 - DDA3937_RS01500 0.60 -0.0
337,578 - DDA3937_RS01500 0.60 -0.3

Or see this region's nucleotide sequence