Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS01105 and DDA3937_RS01110 are separated by 177 nucleotides DDA3937_RS01110 and DDA3937_RS01115 are separated by 43 nucleotides
DDA3937_RS01105: DDA3937_RS01105 - DNA-directed RNA polymerase subunit beta', at 251,342 to 255,565
_RS01105
DDA3937_RS01110: DDA3937_RS01110 - hypothetical protein, at 255,743 to 256,000
_RS01110
DDA3937_RS01115: DDA3937_RS01115 - DUF1176 domain-containing protein, at 256,044 to 257,141
_RS01115
Position (kb) 255
256
257 Strain fitness (log2 ratio) -2
-1
0
1
2 at 255.624 kb on - strand at 255.625 kb on + strand at 255.625 kb on + strand at 255.626 kb on - strand at 255.632 kb on - strand at 255.651 kb on + strand at 255.652 kb on - strand at 255.682 kb on + strand at 255.682 kb on + strand at 255.682 kb on + strand at 255.743 kb on - strand at 255.800 kb on - strand, within DDA3937_RS01110 at 255.820 kb on + strand, within DDA3937_RS01110 at 255.820 kb on + strand, within DDA3937_RS01110 at 255.820 kb on + strand, within DDA3937_RS01110 at 255.898 kb on + strand, within DDA3937_RS01110 at 255.998 kb on + strand at 255.998 kb on + strand at 255.998 kb on + strand at 255.999 kb on - strand at 255.999 kb on - strand at 255.999 kb on - strand at 255.999 kb on - strand at 256.007 kb on + strand at 256.007 kb on + strand at 256.008 kb on - strand at 256.009 kb on + strand at 256.009 kb on + strand at 256.009 kb on + strand at 256.010 kb on - strand at 256.010 kb on - strand at 256.010 kb on - strand at 256.150 kb on + strand at 256.150 kb on + strand at 256.151 kb on - strand at 256.151 kb on - strand at 256.169 kb on + strand, within DDA3937_RS01115 at 256.205 kb on + strand, within DDA3937_RS01115 at 256.216 kb on - strand, within DDA3937_RS01115 at 256.216 kb on - strand, within DDA3937_RS01115 at 256.232 kb on - strand, within DDA3937_RS01115 at 256.302 kb on + strand, within DDA3937_RS01115 at 256.303 kb on - strand, within DDA3937_RS01115 at 256.371 kb on + strand, within DDA3937_RS01115 at 256.372 kb on - strand, within DDA3937_RS01115 at 256.372 kb on - strand, within DDA3937_RS01115 at 256.372 kb on - strand, within DDA3937_RS01115 at 256.372 kb on - strand, within DDA3937_RS01115 at 256.372 kb on - strand, within DDA3937_RS01115 at 256.564 kb on + strand, within DDA3937_RS01115 at 256.565 kb on - strand, within DDA3937_RS01115 at 256.565 kb on - strand, within DDA3937_RS01115 at 256.565 kb on - strand, within DDA3937_RS01115 at 256.635 kb on + strand, within DDA3937_RS01115 at 256.635 kb on + strand, within DDA3937_RS01115 at 256.635 kb on + strand, within DDA3937_RS01115 at 256.635 kb on + strand, within DDA3937_RS01115 at 256.636 kb on - strand, within DDA3937_RS01115 at 256.670 kb on - strand, within DDA3937_RS01115 at 256.670 kb on - strand, within DDA3937_RS01115 at 256.670 kb on - strand, within DDA3937_RS01115 at 256.892 kb on + strand, within DDA3937_RS01115 at 256.893 kb on - strand, within DDA3937_RS01115 at 256.947 kb on + strand, within DDA3937_RS01115 at 256.948 kb on - strand, within DDA3937_RS01115 at 256.971 kb on + strand, within DDA3937_RS01115 at 256.972 kb on - strand, within DDA3937_RS01115
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 255,624 - -1.3 255,625 + -0.7 255,625 + -0.3 255,626 - -0.1 255,632 - +0.6 255,651 + -0.7 255,652 - -0.3 255,682 + +1.3 255,682 + -0.0 255,682 + -0.5 255,743 - +0.2 255,800 - DDA3937_RS01110 0.22 -0.6 255,820 + DDA3937_RS01110 0.30 -0.5 255,820 + DDA3937_RS01110 0.30 -1.0 255,820 + DDA3937_RS01110 0.30 -0.1 255,898 + DDA3937_RS01110 0.60 -1.8 255,998 + -0.0 255,998 + +0.2 255,998 + -0.7 255,999 - +0.2 255,999 - -0.6 255,999 - -0.3 255,999 - +0.5 256,007 + +0.3 256,007 + -1.0 256,008 - -0.3 256,009 + -0.1 256,009 + +1.3 256,009 + +0.2 256,010 - +0.8 256,010 - -0.3 256,010 - -0.4 256,150 + -0.9 256,150 + -0.7 256,151 - -0.3 256,151 - -0.3 256,169 + DDA3937_RS01115 0.11 +0.4 256,205 + DDA3937_RS01115 0.15 +0.0 256,216 - DDA3937_RS01115 0.16 -2.5 256,216 - DDA3937_RS01115 0.16 -0.6 256,232 - DDA3937_RS01115 0.17 -0.7 256,302 + DDA3937_RS01115 0.23 -1.7 256,303 - DDA3937_RS01115 0.24 -0.0 256,371 + DDA3937_RS01115 0.30 -1.3 256,372 - DDA3937_RS01115 0.30 -1.1 256,372 - DDA3937_RS01115 0.30 -0.8 256,372 - DDA3937_RS01115 0.30 +1.8 256,372 - DDA3937_RS01115 0.30 -0.5 256,372 - DDA3937_RS01115 0.30 +0.6 256,564 + DDA3937_RS01115 0.47 +0.7 256,565 - DDA3937_RS01115 0.47 -1.3 256,565 - DDA3937_RS01115 0.47 +0.7 256,565 - DDA3937_RS01115 0.47 +0.4 256,635 + DDA3937_RS01115 0.54 -1.3 256,635 + DDA3937_RS01115 0.54 +2.5 256,635 + DDA3937_RS01115 0.54 -0.0 256,635 + DDA3937_RS01115 0.54 -2.4 256,636 - DDA3937_RS01115 0.54 -0.7 256,670 - DDA3937_RS01115 0.57 +0.4 256,670 - DDA3937_RS01115 0.57 -0.0 256,670 - DDA3937_RS01115 0.57 +0.0 256,892 + DDA3937_RS01115 0.77 +0.3 256,893 - DDA3937_RS01115 0.77 +0.3 256,947 + DDA3937_RS01115 0.82 +0.1 256,948 - DDA3937_RS01115 0.82 -0.3 256,971 + DDA3937_RS01115 0.84 -0.1 256,972 - DDA3937_RS01115 0.85 -0.3
Or see this region's nucleotide sequence