Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS00975 and DDA3937_RS00980 are separated by 206 nucleotides DDA3937_RS00980 and DDA3937_RS00985 are separated by 14 nucleotides DDA3937_RS00985 and DDA3937_RS00990 are separated by 12 nucleotides
DDA3937_RS00975: DDA3937_RS00975 - Si-specific NAD(P)(+) transhydrogenase, at 224,627 to 226,027
_RS00975
DDA3937_RS00980: DDA3937_RS00980 - HTH-type transcriptional repressor FabR, at 226,234 to 226,872
_RS00980
DDA3937_RS00985: DDA3937_RS00985 - YijD family membrane protein, at 226,887 to 227,261
_RS00985
DDA3937_RS00990: DDA3937_RS00990 - tRNA (uridine(54)-C5)-methyltransferase TrmA, at 227,274 to 228,377
_RS00990
Position (kb) 226
227 Strain fitness (log2 ratio) -2
-1
0
1
2 at 225.538 kb on - strand, within DDA3937_RS00975 at 225.659 kb on - strand, within DDA3937_RS00975 at 225.910 kb on + strand at 225.924 kb on - strand at 226.015 kb on - strand at 226.053 kb on + strand at 226.054 kb on - strand at 226.077 kb on - strand at 226.093 kb on + strand at 226.117 kb on + strand at 226.117 kb on + strand at 226.142 kb on - strand at 226.142 kb on - strand at 226.144 kb on + strand at 226.164 kb on + strand at 226.164 kb on + strand at 226.164 kb on + strand at 226.164 kb on + strand at 226.164 kb on + strand at 226.164 kb on + strand at 226.164 kb on + strand at 226.164 kb on + strand at 226.164 kb on + strand at 226.164 kb on + strand at 226.165 kb on - strand at 226.165 kb on - strand at 226.165 kb on - strand at 226.165 kb on - strand at 226.165 kb on - strand at 226.165 kb on - strand at 226.165 kb on - strand at 226.165 kb on - strand at 226.168 kb on + strand at 226.168 kb on + strand at 226.168 kb on + strand at 226.169 kb on - strand at 226.176 kb on - strand at 226.185 kb on + strand at 226.186 kb on - strand at 226.186 kb on - strand at 226.186 kb on - strand at 226.187 kb on + strand at 226.187 kb on + strand at 226.187 kb on + strand at 226.187 kb on + strand at 226.187 kb on + strand at 226.188 kb on - strand at 226.188 kb on - strand at 226.188 kb on - strand at 226.188 kb on - strand at 226.188 kb on - strand at 226.188 kb on - strand at 226.188 kb on - strand at 226.188 kb on - strand at 226.188 kb on - strand at 226.188 kb on - strand at 226.188 kb on - strand at 226.188 kb on - strand at 226.204 kb on + strand at 226.204 kb on + strand at 226.205 kb on - strand at 226.205 kb on - strand at 226.205 kb on - strand at 226.205 kb on - strand at 226.205 kb on - strand at 226.205 kb on - strand at 226.232 kb on + strand at 226.301 kb on + strand, within DDA3937_RS00980 at 226.301 kb on + strand, within DDA3937_RS00980 at 226.302 kb on - strand, within DDA3937_RS00980 at 226.302 kb on - strand, within DDA3937_RS00980 at 226.368 kb on + strand, within DDA3937_RS00980 at 226.379 kb on - strand, within DDA3937_RS00980 at 226.473 kb on + strand, within DDA3937_RS00980 at 226.473 kb on + strand, within DDA3937_RS00980 at 226.539 kb on + strand, within DDA3937_RS00980 at 226.539 kb on + strand, within DDA3937_RS00980 at 226.608 kb on - strand, within DDA3937_RS00980 at 226.629 kb on + strand, within DDA3937_RS00980 at 226.648 kb on + strand, within DDA3937_RS00980 at 226.648 kb on + strand, within DDA3937_RS00980 at 226.648 kb on + strand, within DDA3937_RS00980 at 226.648 kb on + strand, within DDA3937_RS00980 at 226.649 kb on - strand, within DDA3937_RS00980 at 226.649 kb on - strand, within DDA3937_RS00980 at 226.649 kb on - strand, within DDA3937_RS00980 at 226.669 kb on - strand, within DDA3937_RS00980 at 226.718 kb on + strand, within DDA3937_RS00980 at 226.719 kb on - strand, within DDA3937_RS00980 at 226.800 kb on + strand, within DDA3937_RS00980 at 226.800 kb on + strand, within DDA3937_RS00980 at 226.800 kb on + strand, within DDA3937_RS00980 at 226.800 kb on + strand, within DDA3937_RS00980 at 226.801 kb on - strand, within DDA3937_RS00980 at 226.801 kb on - strand, within DDA3937_RS00980 at 226.801 kb on - strand, within DDA3937_RS00980 at 226.801 kb on - strand, within DDA3937_RS00980 at 226.801 kb on - strand, within DDA3937_RS00980 at 226.801 kb on - strand, within DDA3937_RS00980 at 226.819 kb on + strand at 226.820 kb on - strand at 226.820 kb on - strand at 226.820 kb on - strand at 226.820 kb on - strand at 226.820 kb on - strand at 226.820 kb on - strand at 226.822 kb on + strand at 226.822 kb on + strand at 226.822 kb on + strand at 226.822 kb on + strand at 226.823 kb on - strand at 226.823 kb on - strand at 226.871 kb on - strand at 226.900 kb on + strand at 226.901 kb on - strand at 226.982 kb on + strand, within DDA3937_RS00985 at 226.982 kb on + strand, within DDA3937_RS00985 at 226.983 kb on - strand, within DDA3937_RS00985 at 226.983 kb on - strand, within DDA3937_RS00985 at 227.017 kb on + strand, within DDA3937_RS00985 at 227.031 kb on + strand, within DDA3937_RS00985 at 227.032 kb on - strand, within DDA3937_RS00985 at 227.032 kb on - strand, within DDA3937_RS00985 at 227.032 kb on - strand, within DDA3937_RS00985 at 227.049 kb on + strand, within DDA3937_RS00985 at 227.049 kb on + strand, within DDA3937_RS00985 at 227.049 kb on + strand, within DDA3937_RS00985 at 227.050 kb on - strand, within DDA3937_RS00985 at 227.117 kb on - strand, within DDA3937_RS00985 at 227.121 kb on + strand, within DDA3937_RS00985 at 227.121 kb on + strand, within DDA3937_RS00985 at 227.134 kb on + strand, within DDA3937_RS00985 at 227.135 kb on - strand, within DDA3937_RS00985 at 227.135 kb on - strand, within DDA3937_RS00985 at 227.253 kb on - strand at 227.259 kb on + strand at 227.275 kb on + strand at 227.276 kb on - strand at 227.318 kb on + strand at 227.319 kb on - strand at 227.319 kb on - strand at 227.320 kb on + strand at 227.370 kb on + strand at 227.370 kb on + strand at 227.371 kb on - strand at 227.416 kb on + strand, within DDA3937_RS00990 at 227.416 kb on + strand, within DDA3937_RS00990 at 227.416 kb on + strand, within DDA3937_RS00990 at 227.416 kb on + strand, within DDA3937_RS00990 at 227.416 kb on + strand, within DDA3937_RS00990 at 227.416 kb on + strand, within DDA3937_RS00990 at 227.416 kb on + strand, within DDA3937_RS00990 at 227.417 kb on - strand, within DDA3937_RS00990 at 227.417 kb on - strand, within DDA3937_RS00990 at 227.417 kb on - strand, within DDA3937_RS00990 at 227.417 kb on - strand, within DDA3937_RS00990 at 227.417 kb on - strand, within DDA3937_RS00990 at 227.417 kb on - strand, within DDA3937_RS00990 at 227.417 kb on - strand, within DDA3937_RS00990 at 227.424 kb on - strand, within DDA3937_RS00990 at 227.424 kb on - strand, within DDA3937_RS00990 at 227.567 kb on + strand, within DDA3937_RS00990 at 227.603 kb on + strand, within DDA3937_RS00990 at 227.629 kb on + strand, within DDA3937_RS00990 at 227.630 kb on - strand, within DDA3937_RS00990 at 227.630 kb on - strand, within DDA3937_RS00990 at 227.630 kb on - strand, within DDA3937_RS00990 at 227.630 kb on - strand, within DDA3937_RS00990 at 227.725 kb on + strand, within DDA3937_RS00990 at 227.726 kb on - strand, within DDA3937_RS00990 at 227.726 kb on - strand, within DDA3937_RS00990 at 227.789 kb on + strand, within DDA3937_RS00990 at 227.836 kb on + strand, within DDA3937_RS00990 at 227.837 kb on - strand, within DDA3937_RS00990 at 227.837 kb on - strand, within DDA3937_RS00990
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 225,538 - DDA3937_RS00975 0.65 +0.3 225,659 - DDA3937_RS00975 0.74 -0.3 225,910 + -0.3 225,924 - -0.5 226,015 - -2.6 226,053 + -1.5 226,054 - -1.3 226,077 - -0.3 226,093 + -0.9 226,117 + -1.0 226,117 + -1.9 226,142 - -0.6 226,142 - -0.9 226,144 + -0.1 226,164 + -1.0 226,164 + +0.3 226,164 + -0.0 226,164 + +0.1 226,164 + -1.1 226,164 + +1.3 226,164 + -1.7 226,164 + +1.3 226,164 + -0.4 226,164 + -0.2 226,165 - +0.1 226,165 - -0.6 226,165 - -2.0 226,165 - -0.1 226,165 - +0.3 226,165 - -0.3 226,165 - -1.3 226,165 - +2.1 226,168 + -1.6 226,168 + +0.6 226,168 + -1.6 226,169 - -0.1 226,176 - -0.7 226,185 + +0.3 226,186 - -0.5 226,186 - -0.3 226,186 - -2.3 226,187 + +0.5 226,187 + +0.2 226,187 + +0.2 226,187 + +0.5 226,187 + -0.6 226,188 - -0.0 226,188 - -0.1 226,188 - -0.5 226,188 - -1.1 226,188 - -0.9 226,188 - -1.0 226,188 - -1.0 226,188 - -1.2 226,188 - -2.4 226,188 - -1.2 226,188 - -0.6 226,188 - -1.4 226,204 + -0.0 226,204 + -0.7 226,205 - -0.7 226,205 - -1.0 226,205 - -1.2 226,205 - -0.3 226,205 - -0.7 226,205 - -2.4 226,232 + -1.6 226,301 + DDA3937_RS00980 0.10 -0.7 226,301 + DDA3937_RS00980 0.10 -1.7 226,302 - DDA3937_RS00980 0.11 -1.3 226,302 - DDA3937_RS00980 0.11 -0.4 226,368 + DDA3937_RS00980 0.21 -1.1 226,379 - DDA3937_RS00980 0.23 -1.1 226,473 + DDA3937_RS00980 0.37 -0.7 226,473 + DDA3937_RS00980 0.37 -1.6 226,539 + DDA3937_RS00980 0.48 -0.7 226,539 + DDA3937_RS00980 0.48 -1.2 226,608 - DDA3937_RS00980 0.59 -1.2 226,629 + DDA3937_RS00980 0.62 -1.9 226,648 + DDA3937_RS00980 0.65 -1.0 226,648 + DDA3937_RS00980 0.65 -1.5 226,648 + DDA3937_RS00980 0.65 -1.0 226,648 + DDA3937_RS00980 0.65 -1.9 226,649 - DDA3937_RS00980 0.65 -0.8 226,649 - DDA3937_RS00980 0.65 -0.9 226,649 - DDA3937_RS00980 0.65 -1.3 226,669 - DDA3937_RS00980 0.68 -1.4 226,718 + DDA3937_RS00980 0.76 -0.6 226,719 - DDA3937_RS00980 0.76 -2.1 226,800 + DDA3937_RS00980 0.89 -1.6 226,800 + DDA3937_RS00980 0.89 -0.9 226,800 + DDA3937_RS00980 0.89 -0.7 226,800 + DDA3937_RS00980 0.89 -1.3 226,801 - DDA3937_RS00980 0.89 -0.7 226,801 - DDA3937_RS00980 0.89 -0.9 226,801 - DDA3937_RS00980 0.89 -0.7 226,801 - DDA3937_RS00980 0.89 -0.7 226,801 - DDA3937_RS00980 0.89 -1.4 226,801 - DDA3937_RS00980 0.89 -1.3 226,819 + -1.0 226,820 - -0.9 226,820 - -1.0 226,820 - +1.0 226,820 - -2.1 226,820 - -0.0 226,820 - -1.0 226,822 + -0.4 226,822 + +0.3 226,822 + -0.8 226,822 + -1.0 226,823 - -0.7 226,823 - -0.9 226,871 - +0.6 226,900 + -0.8 226,901 - -1.4 226,982 + DDA3937_RS00985 0.25 +0.9 226,982 + DDA3937_RS00985 0.25 +0.3 226,983 - DDA3937_RS00985 0.26 -1.6 226,983 - DDA3937_RS00985 0.26 -1.2 227,017 + DDA3937_RS00985 0.35 -1.5 227,031 + DDA3937_RS00985 0.38 -0.4 227,032 - DDA3937_RS00985 0.39 -0.1 227,032 - DDA3937_RS00985 0.39 -1.1 227,032 - DDA3937_RS00985 0.39 +0.3 227,049 + DDA3937_RS00985 0.43 +0.6 227,049 + DDA3937_RS00985 0.43 +0.3 227,049 + DDA3937_RS00985 0.43 +0.2 227,050 - DDA3937_RS00985 0.43 -0.9 227,117 - DDA3937_RS00985 0.61 +1.7 227,121 + DDA3937_RS00985 0.62 -0.7 227,121 + DDA3937_RS00985 0.62 -1.3 227,134 + DDA3937_RS00985 0.66 -1.9 227,135 - DDA3937_RS00985 0.66 +0.3 227,135 - DDA3937_RS00985 0.66 -1.7 227,253 - -0.2 227,259 + +0.5 227,275 + -1.3 227,276 - -0.7 227,318 + -0.3 227,319 - -0.7 227,319 - -0.6 227,320 + +1.3 227,370 + -1.9 227,370 + +0.9 227,371 - +0.6 227,416 + DDA3937_RS00990 0.13 +1.6 227,416 + DDA3937_RS00990 0.13 -0.5 227,416 + DDA3937_RS00990 0.13 -0.2 227,416 + DDA3937_RS00990 0.13 -0.7 227,416 + DDA3937_RS00990 0.13 -0.4 227,416 + DDA3937_RS00990 0.13 +0.6 227,416 + DDA3937_RS00990 0.13 -0.2 227,417 - DDA3937_RS00990 0.13 +0.4 227,417 - DDA3937_RS00990 0.13 -0.4 227,417 - DDA3937_RS00990 0.13 +0.2 227,417 - DDA3937_RS00990 0.13 -0.2 227,417 - DDA3937_RS00990 0.13 -0.4 227,417 - DDA3937_RS00990 0.13 +1.8 227,417 - DDA3937_RS00990 0.13 -1.5 227,424 - DDA3937_RS00990 0.14 +0.1 227,424 - DDA3937_RS00990 0.14 -1.1 227,567 + DDA3937_RS00990 0.27 -1.7 227,603 + DDA3937_RS00990 0.30 -0.2 227,629 + DDA3937_RS00990 0.32 +0.3 227,630 - DDA3937_RS00990 0.32 -0.7 227,630 - DDA3937_RS00990 0.32 -1.0 227,630 - DDA3937_RS00990 0.32 +1.3 227,630 - DDA3937_RS00990 0.32 -0.4 227,725 + DDA3937_RS00990 0.41 -0.5 227,726 - DDA3937_RS00990 0.41 -0.2 227,726 - DDA3937_RS00990 0.41 +0.3 227,789 + DDA3937_RS00990 0.47 -1.1 227,836 + DDA3937_RS00990 0.51 -0.2 227,837 - DDA3937_RS00990 0.51 +0.4 227,837 - DDA3937_RS00990 0.51 -1.0
Or see this region's nucleotide sequence