Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS00965 and DDA3937_RS00970 are separated by 176 nucleotides DDA3937_RS00970 and DDA3937_RS00975 are separated by 83 nucleotides
DDA3937_RS00965: DDA3937_RS00965 - glutathione peroxidase, at 222,718 to 223,449
_RS00965
DDA3937_RS00970: DDA3937_RS00970 - DNA-binding transcriptional regulator OxyR, at 223,626 to 224,543
_RS00970
DDA3937_RS00975: DDA3937_RS00975 - Si-specific NAD(P)(+) transhydrogenase, at 224,627 to 226,027
_RS00975
Position (kb) 223
224
225 Strain fitness (log2 ratio) -2
-1
0
1
2 at 222.778 kb on + strand at 222.778 kb on + strand at 222.779 kb on - strand at 222.779 kb on - strand at 222.795 kb on + strand, within DDA3937_RS00965 at 222.795 kb on + strand, within DDA3937_RS00965 at 222.795 kb on + strand, within DDA3937_RS00965 at 222.795 kb on + strand, within DDA3937_RS00965 at 222.796 kb on - strand, within DDA3937_RS00965 at 222.922 kb on - strand, within DDA3937_RS00965 at 222.948 kb on + strand at 222.948 kb on + strand, within DDA3937_RS00965 at 222.948 kb on + strand, within DDA3937_RS00965 at 222.948 kb on + strand, within DDA3937_RS00965 at 222.948 kb on + strand, within DDA3937_RS00965 at 222.949 kb on - strand, within DDA3937_RS00965 at 222.949 kb on - strand, within DDA3937_RS00965 at 222.949 kb on - strand, within DDA3937_RS00965 at 222.950 kb on + strand, within DDA3937_RS00965 at 222.950 kb on + strand, within DDA3937_RS00965 at 222.950 kb on + strand, within DDA3937_RS00965 at 222.951 kb on - strand, within DDA3937_RS00965 at 222.951 kb on - strand, within DDA3937_RS00965 at 222.951 kb on - strand, within DDA3937_RS00965 at 222.951 kb on - strand, within DDA3937_RS00965 at 222.951 kb on - strand, within DDA3937_RS00965 at 222.951 kb on - strand, within DDA3937_RS00965 at 222.965 kb on + strand, within DDA3937_RS00965 at 222.966 kb on - strand, within DDA3937_RS00965 at 222.966 kb on - strand, within DDA3937_RS00965 at 223.068 kb on - strand, within DDA3937_RS00965 at 223.122 kb on + strand, within DDA3937_RS00965 at 223.123 kb on - strand, within DDA3937_RS00965 at 223.161 kb on + strand, within DDA3937_RS00965 at 223.164 kb on + strand, within DDA3937_RS00965 at 223.164 kb on + strand, within DDA3937_RS00965 at 223.209 kb on + strand, within DDA3937_RS00965 at 223.210 kb on - strand, within DDA3937_RS00965 at 223.210 kb on - strand, within DDA3937_RS00965 at 223.228 kb on + strand, within DDA3937_RS00965 at 223.229 kb on - strand, within DDA3937_RS00965 at 223.275 kb on + strand, within DDA3937_RS00965 at 223.275 kb on + strand, within DDA3937_RS00965 at 223.276 kb on - strand, within DDA3937_RS00965 at 223.276 kb on - strand at 223.277 kb on + strand, within DDA3937_RS00965 at 223.277 kb on + strand, within DDA3937_RS00965 at 223.277 kb on + strand, within DDA3937_RS00965 at 223.277 kb on + strand, within DDA3937_RS00965 at 223.277 kb on + strand, within DDA3937_RS00965 at 223.277 kb on + strand, within DDA3937_RS00965 at 223.277 kb on + strand, within DDA3937_RS00965 at 223.278 kb on - strand, within DDA3937_RS00965 at 223.278 kb on - strand, within DDA3937_RS00965 at 223.311 kb on + strand, within DDA3937_RS00965 at 223.339 kb on + strand, within DDA3937_RS00965 at 223.340 kb on - strand, within DDA3937_RS00965 at 223.411 kb on + strand at 223.527 kb on - strand at 223.527 kb on - strand at 223.527 kb on - strand at 223.571 kb on - strand at 223.631 kb on + strand at 223.631 kb on + strand at 223.642 kb on + strand at 223.642 kb on + strand at 223.643 kb on - strand at 223.643 kb on - strand at 223.643 kb on - strand at 223.992 kb on + strand, within DDA3937_RS00970 at 223.992 kb on + strand at 223.993 kb on - strand, within DDA3937_RS00970 at 224.333 kb on + strand, within DDA3937_RS00970 at 224.337 kb on - strand, within DDA3937_RS00970 at 224.392 kb on - strand, within DDA3937_RS00970 at 224.392 kb on - strand, within DDA3937_RS00970 at 224.404 kb on - strand, within DDA3937_RS00970 at 224.439 kb on + strand, within DDA3937_RS00970 at 224.440 kb on - strand, within DDA3937_RS00970 at 224.440 kb on - strand, within DDA3937_RS00970 at 224.470 kb on - strand at 224.470 kb on - strand at 224.542 kb on - strand at 224.576 kb on - strand at 224.578 kb on + strand at 224.579 kb on - strand at 224.579 kb on - strand at 224.911 kb on - strand, within DDA3937_RS00975 at 224.977 kb on - strand, within DDA3937_RS00975 at 225.538 kb on - strand, within DDA3937_RS00975
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 222,778 + -0.9 222,778 + -0.1 222,779 - -1.0 222,779 - +0.3 222,795 + DDA3937_RS00965 0.11 +0.3 222,795 + DDA3937_RS00965 0.11 +1.4 222,795 + DDA3937_RS00965 0.11 -1.3 222,795 + DDA3937_RS00965 0.11 -1.6 222,796 - DDA3937_RS00965 0.11 -0.4 222,922 - DDA3937_RS00965 0.28 +0.2 222,948 + +0.3 222,948 + DDA3937_RS00965 0.31 -0.7 222,948 + DDA3937_RS00965 0.31 -2.1 222,948 + DDA3937_RS00965 0.31 -0.7 222,948 + DDA3937_RS00965 0.31 +0.5 222,949 - DDA3937_RS00965 0.32 -0.0 222,949 - DDA3937_RS00965 0.32 -1.5 222,949 - DDA3937_RS00965 0.32 -0.3 222,950 + DDA3937_RS00965 0.32 -0.2 222,950 + DDA3937_RS00965 0.32 +1.1 222,950 + DDA3937_RS00965 0.32 -1.1 222,951 - DDA3937_RS00965 0.32 +0.8 222,951 - DDA3937_RS00965 0.32 +0.8 222,951 - DDA3937_RS00965 0.32 -0.8 222,951 - DDA3937_RS00965 0.32 +0.5 222,951 - DDA3937_RS00965 0.32 -0.1 222,951 - DDA3937_RS00965 0.32 +0.5 222,965 + DDA3937_RS00965 0.34 -1.9 222,966 - DDA3937_RS00965 0.34 +1.1 222,966 - DDA3937_RS00965 0.34 -0.2 223,068 - DDA3937_RS00965 0.48 -1.5 223,122 + DDA3937_RS00965 0.55 +0.1 223,123 - DDA3937_RS00965 0.55 -0.4 223,161 + DDA3937_RS00965 0.61 -0.2 223,164 + DDA3937_RS00965 0.61 -0.1 223,164 + DDA3937_RS00965 0.61 +0.5 223,209 + DDA3937_RS00965 0.67 +0.9 223,210 - DDA3937_RS00965 0.67 -0.6 223,210 - DDA3937_RS00965 0.67 +0.2 223,228 + DDA3937_RS00965 0.70 -0.6 223,229 - DDA3937_RS00965 0.70 -0.4 223,275 + DDA3937_RS00965 0.76 +0.3 223,275 + DDA3937_RS00965 0.76 -0.3 223,276 - DDA3937_RS00965 0.76 -0.2 223,276 - +1.3 223,277 + DDA3937_RS00965 0.76 +2.1 223,277 + DDA3937_RS00965 0.76 +1.3 223,277 + DDA3937_RS00965 0.76 -0.1 223,277 + DDA3937_RS00965 0.76 -0.1 223,277 + DDA3937_RS00965 0.76 +0.2 223,277 + DDA3937_RS00965 0.76 +0.9 223,277 + DDA3937_RS00965 0.76 -0.1 223,278 - DDA3937_RS00965 0.77 +0.0 223,278 - DDA3937_RS00965 0.77 +1.3 223,311 + DDA3937_RS00965 0.81 -0.1 223,339 + DDA3937_RS00965 0.85 +1.3 223,340 - DDA3937_RS00965 0.85 -0.4 223,411 + -0.5 223,527 - +0.2 223,527 - +1.7 223,527 - -0.2 223,571 - +0.1 223,631 + -0.0 223,631 + -0.2 223,642 + -0.1 223,642 + -1.0 223,643 - -2.1 223,643 - -1.5 223,643 - +0.3 223,992 + DDA3937_RS00970 0.40 +0.4 223,992 + +1.3 223,993 - DDA3937_RS00970 0.40 -1.4 224,333 + DDA3937_RS00970 0.77 -0.7 224,337 - DDA3937_RS00970 0.77 -1.3 224,392 - DDA3937_RS00970 0.83 -0.8 224,392 - DDA3937_RS00970 0.83 -1.7 224,404 - DDA3937_RS00970 0.85 -1.5 224,439 + DDA3937_RS00970 0.89 -1.3 224,440 - DDA3937_RS00970 0.89 +0.8 224,440 - DDA3937_RS00970 0.89 +1.9 224,470 - -2.6 224,470 - -1.5 224,542 - -0.6 224,576 - -0.3 224,578 + +0.4 224,579 - +0.6 224,579 - -0.1 224,911 - DDA3937_RS00975 0.20 +0.1 224,977 - DDA3937_RS00975 0.25 -0.5 225,538 - DDA3937_RS00975 0.65 +0.3
Or see this region's nucleotide sequence