Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS00910 and DDA3937_RS00915 are separated by 157 nucleotides DDA3937_RS00915 and DDA3937_RS00920 are separated by 9 nucleotides DDA3937_RS00920 and DDA3937_RS00925 are separated by 85 nucleotides
DDA3937_RS00910: DDA3937_RS00910 - 1,4-dihydroxy-2-naphthoate polyprenyltransferase, at 208,870 to 209,787
_RS00910
DDA3937_RS00915: DDA3937_RS00915 - HslU--HslV peptidase ATPase subunit, at 209,945 to 211,276
_RS00915
DDA3937_RS00920: DDA3937_RS00920 - ATP-dependent protease subunit HslV, at 211,286 to 211,816
_RS00920
DDA3937_RS00925: DDA3937_RS00925 - cell division protein FtsN, at 211,902 to 212,831
_RS00925
Position (kb) 209
210
211
212 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 208.950 kb on + strand at 208.951 kb on - strand at 208.979 kb on + strand, within DDA3937_RS00910 at 208.980 kb on - strand, within DDA3937_RS00910 at 209.037 kb on + strand, within DDA3937_RS00910 at 209.037 kb on + strand, within DDA3937_RS00910 at 209.037 kb on + strand, within DDA3937_RS00910 at 209.038 kb on - strand, within DDA3937_RS00910 at 209.038 kb on - strand, within DDA3937_RS00910 at 209.045 kb on + strand, within DDA3937_RS00910 at 209.045 kb on + strand, within DDA3937_RS00910 at 209.045 kb on + strand, within DDA3937_RS00910 at 209.092 kb on + strand, within DDA3937_RS00910 at 209.092 kb on + strand, within DDA3937_RS00910 at 209.092 kb on + strand, within DDA3937_RS00910 at 209.092 kb on + strand, within DDA3937_RS00910 at 209.093 kb on - strand, within DDA3937_RS00910 at 209.093 kb on - strand, within DDA3937_RS00910 at 209.093 kb on - strand, within DDA3937_RS00910 at 209.093 kb on - strand, within DDA3937_RS00910 at 209.102 kb on + strand, within DDA3937_RS00910 at 209.270 kb on + strand, within DDA3937_RS00910 at 209.270 kb on + strand, within DDA3937_RS00910 at 209.270 kb on + strand, within DDA3937_RS00910 at 209.270 kb on + strand, within DDA3937_RS00910 at 209.270 kb on + strand, within DDA3937_RS00910 at 209.271 kb on - strand, within DDA3937_RS00910 at 209.273 kb on + strand, within DDA3937_RS00910 at 209.274 kb on - strand, within DDA3937_RS00910 at 209.274 kb on - strand, within DDA3937_RS00910 at 209.336 kb on + strand, within DDA3937_RS00910 at 209.336 kb on + strand, within DDA3937_RS00910 at 209.336 kb on + strand, within DDA3937_RS00910 at 209.336 kb on + strand, within DDA3937_RS00910 at 209.336 kb on + strand, within DDA3937_RS00910 at 209.336 kb on + strand, within DDA3937_RS00910 at 209.337 kb on - strand, within DDA3937_RS00910 at 209.337 kb on - strand, within DDA3937_RS00910 at 209.337 kb on - strand, within DDA3937_RS00910 at 209.337 kb on - strand, within DDA3937_RS00910 at 209.337 kb on - strand, within DDA3937_RS00910 at 209.337 kb on - strand, within DDA3937_RS00910 at 209.337 kb on - strand, within DDA3937_RS00910 at 209.337 kb on - strand, within DDA3937_RS00910 at 209.343 kb on - strand, within DDA3937_RS00910 at 209.349 kb on + strand, within DDA3937_RS00910 at 209.349 kb on + strand, within DDA3937_RS00910 at 209.361 kb on + strand, within DDA3937_RS00910 at 209.362 kb on - strand, within DDA3937_RS00910 at 209.362 kb on - strand, within DDA3937_RS00910 at 209.363 kb on + strand, within DDA3937_RS00910 at 209.363 kb on + strand, within DDA3937_RS00910 at 209.363 kb on + strand, within DDA3937_RS00910 at 209.363 kb on + strand, within DDA3937_RS00910 at 209.363 kb on + strand, within DDA3937_RS00910 at 209.363 kb on + strand, within DDA3937_RS00910 at 209.364 kb on - strand, within DDA3937_RS00910 at 209.364 kb on - strand, within DDA3937_RS00910 at 209.364 kb on - strand, within DDA3937_RS00910 at 209.364 kb on - strand, within DDA3937_RS00910 at 209.364 kb on - strand, within DDA3937_RS00910 at 209.364 kb on - strand, within DDA3937_RS00910 at 209.364 kb on - strand, within DDA3937_RS00910 at 209.364 kb on - strand at 209.364 kb on - strand, within DDA3937_RS00910 at 209.364 kb on - strand, within DDA3937_RS00910 at 209.364 kb on - strand, within DDA3937_RS00910 at 209.367 kb on + strand, within DDA3937_RS00910 at 209.367 kb on + strand, within DDA3937_RS00910 at 209.367 kb on + strand, within DDA3937_RS00910 at 209.367 kb on + strand, within DDA3937_RS00910 at 209.368 kb on - strand, within DDA3937_RS00910 at 209.368 kb on - strand, within DDA3937_RS00910 at 209.368 kb on - strand, within DDA3937_RS00910 at 209.588 kb on + strand, within DDA3937_RS00910 at 209.589 kb on - strand, within DDA3937_RS00910 at 209.595 kb on + strand, within DDA3937_RS00910 at 209.769 kb on + strand at 209.769 kb on + strand at 209.769 kb on + strand at 209.769 kb on + strand at 209.769 kb on + strand at 209.769 kb on + strand at 209.769 kb on + strand at 209.769 kb on + strand at 209.770 kb on - strand at 209.770 kb on - strand at 209.770 kb on - strand at 209.770 kb on - strand at 209.770 kb on - strand at 209.770 kb on - strand at 209.770 kb on - strand at 209.770 kb on - strand at 209.770 kb on - strand at 209.810 kb on + strand at 209.824 kb on - strand at 209.824 kb on - strand at 209.879 kb on + strand at 209.880 kb on - strand at 209.880 kb on - strand at 209.946 kb on + strand at 209.946 kb on + strand at 209.947 kb on - strand at 209.947 kb on - strand at 209.948 kb on + strand at 209.948 kb on + strand at 209.953 kb on + strand at 209.953 kb on + strand at 209.954 kb on - strand at 209.979 kb on - strand at 209.979 kb on - strand at 210.002 kb on + strand at 210.002 kb on + strand at 210.006 kb on + strand at 210.250 kb on + strand, within DDA3937_RS00915 at 210.250 kb on + strand, within DDA3937_RS00915 at 210.250 kb on + strand, within DDA3937_RS00915 at 210.413 kb on - strand, within DDA3937_RS00915 at 210.479 kb on - strand, within DDA3937_RS00915 at 210.559 kb on + strand, within DDA3937_RS00915 at 210.559 kb on + strand, within DDA3937_RS00915 at 210.732 kb on - strand, within DDA3937_RS00915 at 211.006 kb on - strand, within DDA3937_RS00915 at 211.228 kb on + strand at 211.229 kb on - strand at 211.229 kb on - strand at 211.230 kb on + strand at 211.230 kb on + strand at 211.230 kb on + strand at 211.230 kb on + strand at 211.230 kb on + strand at 211.230 kb on + strand at 211.230 kb on + strand at 211.230 kb on + strand at 211.230 kb on + strand at 211.230 kb on + strand at 211.230 kb on + strand at 211.230 kb on + strand at 211.230 kb on + strand at 211.230 kb on + strand at 211.230 kb on + strand at 211.230 kb on + strand at 211.231 kb on - strand at 211.231 kb on - strand at 211.231 kb on - strand at 211.231 kb on - strand at 211.231 kb on - strand at 211.231 kb on - strand at 211.231 kb on - strand at 211.231 kb on - strand at 211.231 kb on - strand at 211.231 kb on - strand at 211.231 kb on - strand at 211.231 kb on - strand at 211.231 kb on - strand at 211.234 kb on + strand at 211.234 kb on + strand at 211.234 kb on + strand at 211.234 kb on + strand at 211.235 kb on - strand at 211.235 kb on - strand at 211.235 kb on - strand at 211.235 kb on - strand at 211.250 kb on + strand at 211.250 kb on + strand at 211.276 kb on + strand at 211.276 kb on + strand at 211.276 kb on + strand at 211.277 kb on - strand at 211.277 kb on - strand at 211.287 kb on + strand at 211.288 kb on - strand at 211.302 kb on - strand at 211.332 kb on + strand at 211.332 kb on + strand at 211.332 kb on + strand at 211.333 kb on - strand at 211.333 kb on - strand at 211.343 kb on - strand, within DDA3937_RS00920 at 211.343 kb on - strand, within DDA3937_RS00920 at 211.388 kb on + strand, within DDA3937_RS00920 at 211.701 kb on + strand, within DDA3937_RS00920 at 211.701 kb on + strand, within DDA3937_RS00920 at 211.702 kb on - strand, within DDA3937_RS00920 at 211.736 kb on + strand, within DDA3937_RS00920 at 211.797 kb on - strand at 211.803 kb on - strand at 211.803 kb on - strand at 211.867 kb on - strand at 211.876 kb on - strand at 211.991 kb on - strand at 212.226 kb on + strand, within DDA3937_RS00925 at 212.273 kb on + strand, within DDA3937_RS00925 at 212.274 kb on - strand, within DDA3937_RS00925 at 212.274 kb on - strand, within DDA3937_RS00925
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 208,950 + +0.3 208,951 - -0.0 208,979 + DDA3937_RS00910 0.12 +0.3 208,980 - DDA3937_RS00910 0.12 +0.3 209,037 + DDA3937_RS00910 0.18 +0.3 209,037 + DDA3937_RS00910 0.18 -1.1 209,037 + DDA3937_RS00910 0.18 -0.5 209,038 - DDA3937_RS00910 0.18 -0.2 209,038 - DDA3937_RS00910 0.18 -0.2 209,045 + DDA3937_RS00910 0.19 +0.4 209,045 + DDA3937_RS00910 0.19 +0.5 209,045 + DDA3937_RS00910 0.19 +0.5 209,092 + DDA3937_RS00910 0.24 +0.2 209,092 + DDA3937_RS00910 0.24 -0.1 209,092 + DDA3937_RS00910 0.24 +0.8 209,092 + DDA3937_RS00910 0.24 +0.3 209,093 - DDA3937_RS00910 0.24 +2.3 209,093 - DDA3937_RS00910 0.24 +0.3 209,093 - DDA3937_RS00910 0.24 +0.1 209,093 - DDA3937_RS00910 0.24 -0.5 209,102 + DDA3937_RS00910 0.25 -0.2 209,270 + DDA3937_RS00910 0.44 +0.3 209,270 + DDA3937_RS00910 0.44 +0.2 209,270 + DDA3937_RS00910 0.44 +0.5 209,270 + DDA3937_RS00910 0.44 +0.1 209,270 + DDA3937_RS00910 0.44 -0.2 209,271 - DDA3937_RS00910 0.44 -0.7 209,273 + DDA3937_RS00910 0.44 +0.1 209,274 - DDA3937_RS00910 0.44 +0.7 209,274 - DDA3937_RS00910 0.44 +0.1 209,336 + DDA3937_RS00910 0.51 +0.3 209,336 + DDA3937_RS00910 0.51 +0.7 209,336 + DDA3937_RS00910 0.51 -1.8 209,336 + DDA3937_RS00910 0.51 -1.4 209,336 + DDA3937_RS00910 0.51 +0.2 209,336 + DDA3937_RS00910 0.51 -0.3 209,337 - DDA3937_RS00910 0.51 -1.3 209,337 - DDA3937_RS00910 0.51 +0.1 209,337 - DDA3937_RS00910 0.51 +0.2 209,337 - DDA3937_RS00910 0.51 -0.6 209,337 - DDA3937_RS00910 0.51 +0.7 209,337 - DDA3937_RS00910 0.51 +0.4 209,337 - DDA3937_RS00910 0.51 +0.8 209,337 - DDA3937_RS00910 0.51 -0.7 209,343 - DDA3937_RS00910 0.52 +0.2 209,349 + DDA3937_RS00910 0.52 -1.4 209,349 + DDA3937_RS00910 0.52 -0.4 209,361 + DDA3937_RS00910 0.53 +0.0 209,362 - DDA3937_RS00910 0.54 -0.9 209,362 - DDA3937_RS00910 0.54 -0.3 209,363 + DDA3937_RS00910 0.54 +0.1 209,363 + DDA3937_RS00910 0.54 -0.9 209,363 + DDA3937_RS00910 0.54 -0.1 209,363 + DDA3937_RS00910 0.54 -0.3 209,363 + DDA3937_RS00910 0.54 -0.1 209,363 + DDA3937_RS00910 0.54 +1.7 209,364 - DDA3937_RS00910 0.54 -2.4 209,364 - DDA3937_RS00910 0.54 -0.5 209,364 - DDA3937_RS00910 0.54 +0.1 209,364 - DDA3937_RS00910 0.54 -0.5 209,364 - DDA3937_RS00910 0.54 +0.6 209,364 - DDA3937_RS00910 0.54 +1.0 209,364 - DDA3937_RS00910 0.54 +1.0 209,364 - +1.9 209,364 - DDA3937_RS00910 0.54 -0.6 209,364 - DDA3937_RS00910 0.54 -0.7 209,364 - DDA3937_RS00910 0.54 +1.3 209,367 + DDA3937_RS00910 0.54 +0.1 209,367 + DDA3937_RS00910 0.54 +0.3 209,367 + DDA3937_RS00910 0.54 +0.8 209,367 + DDA3937_RS00910 0.54 -0.8 209,368 - DDA3937_RS00910 0.54 -0.1 209,368 - DDA3937_RS00910 0.54 -1.1 209,368 - DDA3937_RS00910 0.54 -0.2 209,588 + DDA3937_RS00910 0.78 -0.4 209,589 - DDA3937_RS00910 0.78 -0.2 209,595 + DDA3937_RS00910 0.79 -0.1 209,769 + +0.8 209,769 + +0.2 209,769 + +0.7 209,769 + +0.0 209,769 + +0.4 209,769 + +0.4 209,769 + -0.4 209,769 + -0.2 209,770 - -1.0 209,770 - -0.5 209,770 - -0.5 209,770 - +1.0 209,770 - -0.7 209,770 - +0.5 209,770 - +0.0 209,770 - -0.1 209,770 - +0.2 209,810 + +0.3 209,824 - -0.0 209,824 - -0.3 209,879 + +1.9 209,880 - +1.5 209,880 - -1.8 209,946 + -0.1 209,946 + -1.0 209,947 - -0.0 209,947 - -0.9 209,948 + +2.0 209,948 + -0.3 209,953 + -1.9 209,953 + -1.1 209,954 - +1.0 209,979 - +0.3 209,979 - -0.3 210,002 + -0.4 210,002 + -2.3 210,006 + +0.3 210,250 + DDA3937_RS00915 0.23 +0.3 210,250 + DDA3937_RS00915 0.23 -0.4 210,250 + DDA3937_RS00915 0.23 -0.4 210,413 - DDA3937_RS00915 0.35 -1.5 210,479 - DDA3937_RS00915 0.40 -0.0 210,559 + DDA3937_RS00915 0.46 -1.3 210,559 + DDA3937_RS00915 0.46 -1.4 210,732 - DDA3937_RS00915 0.59 -1.0 211,006 - DDA3937_RS00915 0.80 -1.9 211,228 + -0.1 211,229 - -0.3 211,229 - -0.3 211,230 + -0.6 211,230 + -1.4 211,230 + -1.5 211,230 + +0.9 211,230 + -1.4 211,230 + -1.5 211,230 + -1.6 211,230 + -0.7 211,230 + -0.7 211,230 + -0.7 211,230 + -0.5 211,230 + -1.6 211,230 + -1.7 211,230 + +0.6 211,230 + -0.7 211,230 + -0.2 211,231 - -1.2 211,231 - -1.9 211,231 - +0.6 211,231 - -0.1 211,231 - +0.3 211,231 - -0.3 211,231 - -0.0 211,231 - -0.6 211,231 - +1.5 211,231 - -2.1 211,231 - -0.3 211,231 - +0.3 211,231 - +0.2 211,234 + -0.6 211,234 + +1.3 211,234 + -0.4 211,234 + +0.1 211,235 - -2.0 211,235 - +0.3 211,235 - -3.1 211,235 - -0.6 211,250 + -0.3 211,250 + -1.3 211,276 + -0.9 211,276 + +0.9 211,276 + -0.3 211,277 - -1.7 211,277 - -0.8 211,287 + -0.9 211,288 - -1.7 211,302 - -0.2 211,332 + -1.2 211,332 + -1.1 211,332 + -0.8 211,333 - +0.8 211,333 - +0.4 211,343 - DDA3937_RS00920 0.11 -0.8 211,343 - DDA3937_RS00920 0.11 -0.3 211,388 + DDA3937_RS00920 0.19 -0.6 211,701 + DDA3937_RS00920 0.78 +0.2 211,701 + DDA3937_RS00920 0.78 -1.4 211,702 - DDA3937_RS00920 0.78 -1.0 211,736 + DDA3937_RS00920 0.85 -0.3 211,797 - +0.1 211,803 - -0.4 211,803 - -0.1 211,867 - -0.1 211,876 - -0.0 211,991 - -0.4 212,226 + DDA3937_RS00925 0.35 -0.7 212,273 + DDA3937_RS00925 0.40 -0.7 212,274 - DDA3937_RS00925 0.40 +0.6 212,274 - DDA3937_RS00925 0.40 +2.3
Or see this region's nucleotide sequence